Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002246

Physical Location & Seq

Genomic Coordinates Reverse (-)

6055028 .. 6058368

Gene Structure 3341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGTGCGGTAAAATCGGCGTTAGGTGATATGGTGATAACCTTTTTGTGGGTTATTCTCTCGGCGACGTTTGGGATACAGACGGCGGCGATTGTTTCCGCCGTAGGGTTTCATGGTATCACTTGGGCTCCTCTTGTGATCTCAACGTTGGTTGTTTTTGTCTCCATCTCGATTTTTACGGTTATTGGAAACGTTCTTGGTGGTGCTAGCTTCAATCCTTGTGGAAACGCAGCGTTTTATACCGCCGGTGTTTCCAGTGATTCTCTCTTCTCCTTGGCCATTAGATCTCCTGCTCAGGCAATTGGTGCGGCAGGCGGTGCGATAACGATCATGGAGATGATACCGGAAAAGTATAAGACTAGGATTGGAGGAAAGCCTTCATTGCAATTTGGTGCACACAATGGAGCTATTTCTGAAGTGGTCCTAAGTTTTAGTGTTACATTTTTGGTTTTACTAATTATCCTAAGAGGTCCTCGAAAACTGCTCGCGAAAACGTTCTTGCTCGCACTCGCTACCGTATCGGTGTTTGTCGTAGGTTCTAAATTCACTAGACCATTCATGAATCCTGCCATTGCGTTTGGGTGGGCATATATCTACAAGTCTCACAACACATGGGACCATTTTTATGTGTATTGGATCAGCTCCTACACCGGAGCTATTTTATCTGCGATGCTCTTTAGAATTATATTTCCGGCTCCACCTCTGGTTCAGAAAAAACAGAAGAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012505 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

243

Amino Acids

26.04

Weight (kDa)

10.05

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	3 - 226	1.5e-09	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04090 AT5G18290 AT5G18290
fragaria_vesca	FvH4_6g00600 FvH4_6g00600 FvH4_6g43020 FvH4_6g43030
malus_domestica	MD09G1110400.v1.1 MD14G1000500.v1.1 MD17G1098100.v1.1
prunus_persica	Prupe.3G216100_v2.0.a1 Prupe.7G000900_v2.0.a1
pyrus_communis	pycom09g03280 pycom49g00030
rosa_chinensis	RchiOBHm_Chr2g0159011 RchiOBHm_Chr2g0159031 RchiOBHm_Chr3g0497551 RchiOBHm_Chr5g0069711
rosa_laevigata	RLG00000021130 RLG00000021131 RLG00000022454
rosa_multiflora	Rmu_co8255671.1_g000001 Rmu_sc0000212.1_g000020 Rmu_sc0008836.1_g000002 Rmu_sc0012866.1_g000001 Rmu_ssc0000226.1_g000032
rosa_roxburghii	Rroxscaffold_6G00387940
rosa_rugosa	Rorug02G0473400 Rorug02G0473500 Rorug03G0293400 Rorug03G0293400 Rorug03G0293400
rosa_samantha	Rh2BG552800 Rh2BG552900 Rh2DG562800 Rh2DG562900 Rh3AG337500 Rh3BG375800 Rh3CG371800 Rh3DG372400
rosa_wichuraiana	Rw0G011440 Rw2G044700 Rw2G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	488
AciI	CCGC	6 cut(s)	8, 86, 99, 243, 308, 315
AclI	AACGTT	3 cut(s)	146, 192, 494
AclWI	GGATC	1 cut(s)	644
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	542
AcuI	CTGAAG	1 cut(s)	435
AfiI	CCNNNNNNNGG	2 cut(s)	48, 105
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	5 cut(s)	210, 407, 642, 656, 728
AluI	AGCT	5 cut(s)	210, 407, 642, 656, 728
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	2 cut(s)	166, 606
Alw44I	GTGCAC	1 cut(s)	393
AlwI	GGATC	1 cut(s)	644
AoxI	GGCC	1 cut(s)	276
ApaLI	GTGCAC	1 cut(s)	393
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	542
Asp700I	GAANNNNTTC	2 cut(s)	376, 494
AspS9I	GGNCC	3 cut(s)	421, 470, 616
AsuHPI	GGTGA	2 cut(s)	38, 46
AsuNHI	GCTAGC	1 cut(s)	206
AvaII	GGWCC	3 cut(s)	421, 470, 616
BaeGI	GKGCMC	1 cut(s)	397
BalI	TGGCCA	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	2 cut(s)	86, 99
BciVI	GTATCC	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	166, 606
BfaI	CTAG	3 cut(s)	207, 360, 549
BfuI	GTATCC	1 cut(s)	69
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	3 cut(s)	87, 231, 309
BlsI	GCNGC	3 cut(s)	88, 232, 310
Bme18I	GGWCC	3 cut(s)	421, 470, 616
BmgT120I	GGNCC	3 cut(s)	421, 470, 616
BmiI	GGNNCC	3 cut(s)	129, 617, 696
BmsI	GCATC	1 cut(s)	660
BmtI	GCTAGC	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	2 cut(s)	343, 650
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 105
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	255
Bse3DI	GCAATG	2 cut(s)	380, 570
Bse8I	GATNNNNATC	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	2 cut(s)	48, 105
BseMI	GCAATG	2 cut(s)	380, 570
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	488
BshFI	GGCC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	4 cut(s)	246, 344, 651, 692
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	2 cut(s)	48, 105
BsmAI	GTCTC	2 cut(s)	166, 606
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	130, 397
Bsp143I	GATC	4 cut(s)	138, 284, 327, 636
Bsp68I	TCGCGA	1 cut(s)	488
BspACI	CCGC	6 cut(s)	8, 86, 99, 243, 308, 315
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	488
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	3 cut(s)	129, 617, 696
BspOI	GCTAGC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	644
BsrDI	GCAATG	2 cut(s)	380, 570
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	255
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	4 cut(s)	138, 284, 327, 636
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	181, 517
Bst6I	CTCTTC	1 cut(s)	272
BstAPI	GCANNNNNTGC	2 cut(s)	305, 317
BstC8I	GCNNGC	4 cut(s)	208, 313, 486, 504
BstDEI	CTNAG	3 cut(s)	294, 425, 464
BstFNI	CGCG	1 cut(s)	488
BstKTI	GATC	4 cut(s)	141, 287, 330, 639
BstMAI	GTCTC	2 cut(s)	166, 606
BstMBI	GATC	4 cut(s)	138, 284, 327, 636
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 317, 382
BstSLI	GKGCMC	1 cut(s)	397
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	683
BtsIMutI	CAGTG	1 cut(s)	262
BtuMI	TCGCGA	1 cut(s)	488
Cac8I	GCNNGC	4 cut(s)	208, 313, 486, 504
CciI	TCATGA	1 cut(s)	558
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	3 cut(s)	421, 470, 616
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	4 cut(s)	113, 331, 559, 612
CviJI	RGCY	9 cut(s)	128, 210, 278, 376, 407, 642, 656, 695, 728
CviKI_1	RGCY	9 cut(s)	128, 210, 278, 376, 407, 642, 656, 695, 728
DdeI	CTNAG	3 cut(s)	294, 425, 464
DpnI	GATC	4 cut(s)	140, 286, 329, 638
DpnII	GATC	4 cut(s)	138, 284, 327, 636
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	130
Eco47I	GGWCC	3 cut(s)	421, 470, 616
Eco57I	CTGAAG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	4 cut(s)	116, 334, 562, 615
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	4 cut(s)	112, 330, 558, 611
Fnu4HI	GCNGC	3 cut(s)	87, 231, 309
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	3 cut(s)	87, 231, 309
FspBI	CTAG	3 cut(s)	207, 360, 549
GluI	GCNGC	3 cut(s)	87, 231, 309
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	4 cut(s)	246, 344, 651, 692
Hin1II	CATG	4 cut(s)	116, 334, 562, 615
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	2 cut(s)	260, 562
HpaII	CCGG	4 cut(s)	246, 344, 651, 692
HphI	GGTGA	2 cut(s)	38, 46
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	2 cut(s)	415, 711
Hpy188III	TCNNGA	3 cut(s)	169, 487, 559
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	387
HpyCH4III	ACNGT	2 cut(s)	181, 517
HpyCH4IV	ACGT	4 cut(s)	68, 146, 192, 494
HpyCH4V	TGCA	2 cut(s)	385, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 317, 382
HpyF3I	CTNAG	3 cut(s)	294, 425, 464
HpySE526I	ACGT	4 cut(s)	68, 146, 192, 494
Hsp92II	CATG	4 cut(s)	116, 334, 562, 615
Kzo9I	GATC	4 cut(s)	138, 284, 327, 636
LmnI	GCTCC	5 cut(s)	133, 404, 647, 653, 700
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	1 cut(s)	660
MaeI	CTAG	3 cut(s)	207, 360, 549
MaeII	ACGT	4 cut(s)	68, 146, 192, 494
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	4 cut(s)	140, 286, 329, 638
MboI	GATC	4 cut(s)	138, 284, 327, 636
MboII	GAAGA	1 cut(s)	259
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	2 cut(s)	130, 397
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	5 cut(s)	300, 386, 456, 542, 681
MluNI	TGGCCA	1 cut(s)	278
MnlI	CCTC	5 cut(s)	141, 362, 461, 483, 711
Mox20I	TGGCCA	1 cut(s)	278
MroXI	GAANNNNTTC	2 cut(s)	376, 494
MscI	TGGCCA	1 cut(s)	278
MslI	CAYNNNNRTG	2 cut(s)	335, 624
Msp20I	TGGCCA	1 cut(s)	278
MspI	CCGG	4 cut(s)	246, 344, 651, 692
MunI	CAATTG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	3 cut(s)	305, 317, 382
NdeII	GATC	4 cut(s)	138, 284, 327, 636
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	4 cut(s)	116, 334, 562, 615
NlaIV	GGNNCC	3 cut(s)	129, 617, 696
NmeAIII	GCCGAG	1 cut(s)	41
NruI	TCGCGA	1 cut(s)	488
PagI	TCATGA	1 cut(s)	558
PdmI	GAANNNNTTC	2 cut(s)	376, 494
PfeI	GAWTC	2 cut(s)	260, 562
PkrI	GCNGC	3 cut(s)	88, 232, 310
PpuMI	RGGWCCY	1 cut(s)	470
Psp1406I	AACGTT	3 cut(s)	146, 192, 494
Psp5II	RGGWCCY	1 cut(s)	470
PspN4I	GGNNCC	3 cut(s)	129, 617, 696
PspPI	GGNCC	3 cut(s)	421, 470, 616
PspPPI	RGGWCCY	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	284
RruI	TCGCGA	1 cut(s)	488
RseI	CAYNNNNRTG	2 cut(s)	335, 624
SatI	GCNGC	3 cut(s)	87, 231, 309
Sau3AI	GATC	4 cut(s)	138, 284, 327, 636
Sau96I	GGNCC	3 cut(s)	421, 470, 616
SduI	GDGCHC	2 cut(s)	130, 397
SfaNI	GCATC	1 cut(s)	660
SgrAI	CRCCGGYG	1 cut(s)	245
SinI	GGWCC	3 cut(s)	421, 470, 616
SmiMI	CAYNNNNRTG	2 cut(s)	335, 624
Sse9I	AATT	5 cut(s)	300, 386, 456, 542, 681
SsiI	CCGC	6 cut(s)	8, 86, 99, 243, 308, 315
SspMI	CTAG	3 cut(s)	207, 360, 549
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	181, 517
TaiI	ACGT	4 cut(s)	71, 149, 195, 497
TaqI	TCGA	2 cut(s)	170, 475
TasI	AATT	5 cut(s)	300, 386, 456, 542, 681
TauI	GCSGC	2 cut(s)	89, 311
TfiI	GAWTC	2 cut(s)	260, 562
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	4 cut(s)	101, 369, 547, 575
TspRI	CASTG	1 cut(s)	262
VneI	GTGCAC	1 cut(s)	393
VpaK11BI	GGWCC	3 cut(s)	421, 470, 616
XapI	RAATTY	1 cut(s)	542
XmnI	GAANNNNTTC	2 cut(s)	376, 494
XspI	CTAG	3 cut(s)	207, 360, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.