Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002246

Physical Location & Seq

Genomic Coordinates Forward (+)

21856714 .. 21858607

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G216100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGGGTGATCAAGGCAGCTCTAGGAGATGCAGTTCTGACTTCCCTGTGGGTTTTCAGCGCACCAAGTATGGGGGTTTTCACAGTCATCATCGCCTCGTTTCTCGGCATTCAAGCTAGTTCTTTGCTAGGCCTCTTCATCACCACCATAGTTGCCACAATTCTGGTCCTAGCTTTCAGCTTGATAGGCAAGGTTTTGGGTGATGCCAGCTTCAACCCCTCCACCACTGCAAGTTTCTACGCTGCAGGCCTCACCCCCGGCACATCTCTCTTCTCCATGGCCGTCCGGTTCCCGGCTCAGGCAGCCGGTGGAGTAGGAGGTGCCAAGGCAATTCTGCAGGTGATGCCAAAGCAGTACAAGCATATGCTTAAAGGGCCTTTTTTGAAAGTGGATTTGTACACCGGTGTCATAGCTGAGGGGCTGTTGACTTTTGTTCTCTGCTTTTCTCTGCTTGTGATTATTCTCAGAGGTCCTAGAAATCCAATACTGCAGATATGGCTGCTTTCAATTGCTACTGTGGGATTGGTTGTTGCAGGTGGTGGGTACACAGGGCCTTCCATGAACCCAGCAAATGCTTTTGCCTGGGCTTATGTGAATAATTGGCACAACACTTGGGAGCTGTTCTTGGTTTATTGGATTGGCCCCTTCATAGGAGCAACTTTGGCTGCTTCGGTTTTCAAGACTTTGCTTCCCCCACCAATAGCAAAGGAAAAGAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

241

Amino Acids

25.3

Weight (kDa)

9.75

Isoelectric Point (pI)

26.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04090 AT5G18290 AT5G18290
fragaria_vesca	FvH4_6g00600 FvH4_6g00600 FvH4_6g43020 FvH4_6g43030
malus_domestica	MD09G1110400.v1.1 MD14G1000500.v1.1 MD17G1098100.v1.1
prunus_persica	Prupe.3G216100_v2.0.a1 Prupe.7G000900_v2.0.a1
pyrus_communis	pycom09g03280 pycom49g00030
rosa_chinensis	RchiOBHm_Chr2g0159011 RchiOBHm_Chr2g0159031 RchiOBHm_Chr3g0497551 RchiOBHm_Chr5g0069711
rosa_laevigata	RLG00000021130 RLG00000021131 RLG00000022454
rosa_multiflora	Rmu_co8255671.1_g000001 Rmu_sc0000212.1_g000020 Rmu_sc0008836.1_g000002 Rmu_sc0012866.1_g000001 Rmu_ssc0000226.1_g000032
rosa_roxburghii	Rroxscaffold_6G00387940
rosa_rugosa	Rorug02G0473400 Rorug02G0473500 Rorug03G0293400 Rorug03G0293400 Rorug03G0293400
rosa_samantha	Rh2BG552800 Rh2BG552900 Rh2DG562800 Rh2DG562900 Rh3AG337500 Rh3BG375800 Rh3CG371800 Rh3DG372400
rosa_wichuraiana	Rw0G011440 Rw2G044700 Rw2G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	328, 524
Acc36I	ACCTGC	2 cut(s)	328, 524
AccB1I	GGYRCC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	279
AfaI	GTAC	3 cut(s)	356, 398, 545
AfiI	CCNNNNNNNGG	4 cut(s)	71, 292, 298, 650
AgeI	ACCGGT	1 cut(s)	401
AgsI	TTSAA	5 cut(s)	113, 214, 385, 507, 679
AjnI	CCWGG	1 cut(s)	581
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	7 cut(s)	20, 116, 173, 180, 210, 413, 619
AluI	AGCT	7 cut(s)	20, 116, 173, 180, 210, 413, 619
AoxI	GGCC	6 cut(s)	130, 247, 279, 374, 551, 640
ApeKI	GCWGC	5 cut(s)	17, 242, 302, 499, 665
AsiGI	ACCGGT	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	5 cut(s)	166, 374, 470, 551, 641
AsuC2I	CCSGG	2 cut(s)	258, 293
AsuHPI	GGTGA	5 cut(s)	19, 133, 212, 244, 352
AvaII	GGWCC	2 cut(s)	166, 470
BanI	GGYRCC	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	5 cut(s)	29, 229, 314, 486, 652
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	583
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	2 cut(s)	258, 293
BfaI	CTAG	5 cut(s)	23, 117, 128, 170, 474
BfmI	CTRYAG	3 cut(s)	243, 335, 488
BfuAI	ACCTGC	2 cut(s)	328, 524
BisI	GCNGC	5 cut(s)	18, 243, 303, 500, 666
BlsI	GCNGC	5 cut(s)	19, 244, 304, 501, 667
Bme1390I	CCNGG	3 cut(s)	258, 293, 583
Bme18I	GGWCC	2 cut(s)	166, 470
BmgT120I	GGNCC	5 cut(s)	166, 374, 470, 551, 641
BmiI	GGNNCC	3 cut(s)	290, 322, 643
BmrFI	CCNGG	3 cut(s)	258, 293, 583
BmsI	GCATC	3 cut(s)	19, 193, 333
Bpu10I	CCTNAGC	2 cut(s)	297, 414
BpuMI	CCSGG	2 cut(s)	258, 293
BsaJI	CCNNGG	4 cut(s)	256, 276, 324, 582
BsaWI	WCCGGW	2 cut(s)	285, 401
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 292, 298, 650
Bse118I	RCCGGY	2 cut(s)	305, 401
BseBI	CCWGG	1 cut(s)	583
BseDI	CCNNGG	4 cut(s)	256, 276, 324, 582
BseLI	CCNNNNNNNGG	4 cut(s)	71, 292, 298, 650
BseMII	CTCAG	3 cut(s)	311, 405, 478
BseXI	GCAGC	5 cut(s)	29, 229, 314, 486, 652
BseYI	CCCAGC	1 cut(s)	565
BshFI	GGCC	6 cut(s)	132, 249, 281, 376, 553, 642
BshNI	GGYRCC	1 cut(s)	320
BshTI	ACCGGT	1 cut(s)	401
BsiSI	CCGG	5 cut(s)	258, 286, 293, 306, 402
BslI	CCNNNNNNNGG	4 cut(s)	71, 292, 298, 650
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	6 cut(s)	132, 249, 281, 376, 553, 642
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	9
Bsp19I	CCATGG	1 cut(s)	276
BspANI	GGCC	6 cut(s)	132, 249, 281, 376, 553, 642
BspCNI	CTCAG	3 cut(s)	310, 406, 477
BspLI	GGNNCC	3 cut(s)	290, 322, 643
BspMAI	CTGCAG	3 cut(s)	247, 339, 492
BspMI	ACCTGC	2 cut(s)	328, 524
BspT107I	GGYRCC	1 cut(s)	320
BsrFI	RCCGGY	2 cut(s)	305, 401
BsrGI	TGTACA	1 cut(s)	396
BssAI	RCCGGY	2 cut(s)	305, 401
BssECI	CCNNGG	4 cut(s)	256, 276, 324, 582
BssMI	GATC	1 cut(s)	9
BssT1I	CCWWGG	2 cut(s)	276, 324
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	2 cut(s)	85, 517
Bst6I	CTCTTC	2 cut(s)	140, 275
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstAUI	TGTACA	1 cut(s)	396
BstC8I	GCNNGC	2 cut(s)	208, 247
BstDEI	CTNAG	3 cut(s)	297, 414, 464
BstDSI	CCRYGG	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	7 cut(s)	186, 302, 343, 358, 373, 496, 662
BstNI	CCWGG	1 cut(s)	583
BstSCI	CCNGG	3 cut(s)	256, 291, 581
BstSFI	CTRYAG	3 cut(s)	243, 335, 488
BstV1I	GCAGC	5 cut(s)	29, 229, 314, 486, 652
BstXI	CCANNNNNNTGG	1 cut(s)	163
BsuRI	GGCC	6 cut(s)	132, 249, 281, 376, 553, 642
BtgI	CCRYGG	1 cut(s)	276
BtgZI	GCGATG	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	2 cut(s)	328, 524
Cac8I	GCNNGC	2 cut(s)	208, 247
CfoI	GCGC	1 cut(s)	62
Cfr10I	RCCGGY	2 cut(s)	305, 401
Cfr13I	GGNCC	5 cut(s)	166, 374, 470, 551, 641
Csp6I	GTAC	3 cut(s)	355, 397, 544
CspAI	ACCGGT	1 cut(s)	401
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	2 cut(s)	277, 559
CviQI	GTAC	3 cut(s)	355, 397, 544
DdeI	CTNAG	3 cut(s)	297, 414, 464
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	140, 275
EarI	CTCTTC	2 cut(s)	140, 275
Eco130I	CCWWGG	2 cut(s)	276, 324
Eco147I	AGGCCT	2 cut(s)	132, 249
Eco47I	GGWCC	2 cut(s)	166, 470
EcoO109I	RGGNCCY	3 cut(s)	374, 470, 551
EcoRII	CCWGG	1 cut(s)	581
EcoT14I	CCWWGG	2 cut(s)	276, 324
ErhI	CCWWGG	2 cut(s)	276, 324
FaeI	CATG	2 cut(s)	280, 562
FatI	CATG	2 cut(s)	276, 558
FauNDI	CATATG	1 cut(s)	363
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	5 cut(s)	18, 243, 303, 500, 666
Fsp4HI	GCNGC	5 cut(s)	18, 243, 303, 500, 666
FspBI	CTAG	5 cut(s)	23, 117, 128, 170, 474
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	5 cut(s)	18, 243, 303, 500, 666
GsaI	CCCAGC	1 cut(s)	569
HaeIII	GGCC	6 cut(s)	132, 249, 281, 376, 553, 642
HapII	CCGG	5 cut(s)	258, 286, 293, 306, 402
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	280, 562
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HpaII	CCGG	5 cut(s)	258, 286, 293, 306, 402
HphI	GGTGA	5 cut(s)	19, 133, 212, 244, 352
Hpy166II	GTNNAC	3 cut(s)	399, 426, 546
Hpy188I	TCNGA	2 cut(s)	39, 467
Hpy188III	TCNNGA	1 cut(s)	679
Hpy8I	GTNNAC	3 cut(s)	399, 426, 546
HpyAV	CCTTC	2 cut(s)	564, 655
HpyCH4III	ACNGT	2 cut(s)	85, 517
HpyCH4V	TGCA	6 cut(s)	32, 230, 245, 337, 490, 533
HpyF10VI	GCNNNNNNNGC	7 cut(s)	186, 302, 343, 358, 373, 496, 662
HpyF3I	CTNAG	3 cut(s)	297, 414, 464
Hsp92II	CATG	2 cut(s)	280, 562
HspAI	GCGC	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	2 cut(s)	616, 653
Lsp1109I	GCAGC	5 cut(s)	29, 229, 314, 486, 652
LweI	GCATC	3 cut(s)	19, 193, 333
MaeI	CTAG	5 cut(s)	23, 117, 128, 170, 474
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	2 cut(s)	127, 262
MfeI	CAATTG	1 cut(s)	507
MluCI	AATT	4 cut(s)	159, 330, 507, 598
MnlI	CCTC	7 cut(s)	106, 143, 229, 260, 311, 409, 461
MseI	TTAA	1 cut(s)	369
MspI	CCGG	5 cut(s)	258, 286, 293, 306, 402
MspR9I	CCNGG	3 cut(s)	258, 293, 583
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	583
MwoI	GCNNNNNNNGC	7 cut(s)	186, 302, 343, 358, 373, 496, 662
NciI	CCSGG	2 cut(s)	258, 293
NcoI	CCATGG	1 cut(s)	276
NdeI	CATATG	1 cut(s)	363
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	2 cut(s)	280, 562
NlaIV	GGNNCC	3 cut(s)	290, 322, 643
NmeAIII	GCCGAG	1 cut(s)	84
PaqCI	CACCTGC	2 cut(s)	328, 524
PceI	AGGCCT	2 cut(s)	132, 249
PctI	GAATGC	1 cut(s)	108
PinAI	ACCGGT	1 cut(s)	401
PkrI	GCNGC	5 cut(s)	19, 244, 304, 501, 667
PpuMI	RGGWCCY	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	581
PspFI	CCCAGC	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	3 cut(s)	290, 322, 643
PspPI	GGNCC	5 cut(s)	166, 374, 470, 551, 641
PspPPI	RGGWCCY	1 cut(s)	470
PstI	CTGCAG	3 cut(s)	247, 339, 492
RsaI	GTAC	3 cut(s)	356, 398, 545
RsaNI	GTAC	3 cut(s)	355, 397, 544
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	5 cut(s)	18, 243, 303, 500, 666
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	5 cut(s)	166, 374, 470, 551, 641
ScrFI	CCNGG	3 cut(s)	258, 293, 583
SfaNI	GCATC	3 cut(s)	19, 193, 333
SfcI	CTRYAG	3 cut(s)	243, 335, 488
SgrAI	CRCCGGYG	1 cut(s)	401
SinI	GGWCC	2 cut(s)	166, 470
Sse9I	AATT	4 cut(s)	159, 330, 507, 598
SseBI	AGGCCT	2 cut(s)	132, 249
SspMI	CTAG	5 cut(s)	23, 117, 128, 170, 474
StuI	AGGCCT	2 cut(s)	132, 249
StyD4I	CCNGG	3 cut(s)	256, 291, 581
StyI	CCWWGG	2 cut(s)	276, 324
TaaI	ACNGT	2 cut(s)	85, 517
TasI	AATT	4 cut(s)	159, 330, 507, 598
TatI	WGTACW	2 cut(s)	354, 396
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	5 cut(s)	17, 242, 302, 499, 665
TspDTI	ATGAA	3 cut(s)	127, 575, 637
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	166, 470
XspI	CTAG	5 cut(s)	23, 117, 128, 170, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.