Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002246

Physical Location & Seq

Genomic Coordinates Reverse (-)

82424 .. 87273

Gene Structure 4850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1000500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGTGCGATCAAGGCAGCAGCTGGAGACGCGGTGCTGACCTTCTTGTGGATTTCCTGCGCATCCACGCTTGGCCTACTCACGACCCTTATCGCTACTGCCGTTGGCGTTCAAGCCCTCGCCTGGCCCCCTCTCTTCATCACCACCTCCCTTGTCTTCCTGCTTGTCTTCGTCTTCACCTTCATCGGAGACTCCTTGGGCGGCGCCAGCTTCAACCCCACGGGCACTGCCTCCTTTTACGCTGCCGGCCTTGGCTCCGACAACCTCTTCTCCATGGCCCTCCGCTTTCCTGCCCAGGCTTTGGGTGCTGTGGGTGGAGCACTGGTCATTAATGAGGTCATGCCGCAGCAGTACAAGCACATGCTTGGAGGCCCTTCCTTAAAAGTTGACTTGCATACCGGCGCTATTGCTGAGGGGGTCTTGACTTTCATCATCTCCTTTCTTGTCCTCGTAATCATACTCAAAGGTCCTCGTAGCTCATTTCTCAAAATGTGGCTGCTCGCTGTGGTTACTGTTGCATTGGTTGTTACTGGTTCTGTGTATACCGGCCCTTCAATGAATCCCGCCAACGCATTTGGTTGGGCATATGTAAACAATTGGCACAACACGTGGGAGCAGTTTTATGTTTATTGGATTTGCCCCTTCATAGGAGCAATATTGGCTGGTTGGGTCTTCCGTGTGCTCTTTCCTCCCCCATCTTCCAAAAAGAAGAAGACCAAGAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012505 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

243

Amino Acids

25.83

Weight (kDa)

9.55

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	14 - 225	7.1e-19	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04090 AT5G18290 AT5G18290
fragaria_vesca	FvH4_6g00600 FvH4_6g00600 FvH4_6g43020 FvH4_6g43030
malus_domestica	MD09G1110400.v1.1 MD14G1000500.v1.1 MD17G1098100.v1.1
prunus_persica	Prupe.3G216100_v2.0.a1 Prupe.7G000900_v2.0.a1
pyrus_communis	pycom09g03280 pycom49g00030
rosa_chinensis	RchiOBHm_Chr2g0159011 RchiOBHm_Chr2g0159031 RchiOBHm_Chr3g0497551 RchiOBHm_Chr5g0069711
rosa_laevigata	RLG00000021130 RLG00000021131 RLG00000022454
rosa_multiflora	Rmu_co8255671.1_g000001 Rmu_sc0000212.1_g000020 Rmu_sc0008836.1_g000002 Rmu_sc0012866.1_g000001 Rmu_ssc0000226.1_g000032
rosa_roxburghii	Rroxscaffold_6G00387940
rosa_rugosa	Rorug02G0473400 Rorug02G0473500 Rorug03G0293400 Rorug03G0293400 Rorug03G0293400
rosa_samantha	Rh2BG552800 Rh2BG552900 Rh2DG562800 Rh2DG562900 Rh3AG337500 Rh3BG375800 Rh3CG371800 Rh3DG372400
rosa_wichuraiana	Rw0G011440 Rw2G044700 Rw2G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	542
AccII	CGCG	1 cut(s)	32
AciI	CCGC	5 cut(s)	32, 201, 283, 344, 564
AcvI	CACGTG	1 cut(s)	609
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	4 cut(s)	48, 123, 301, 647
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	3 cut(s)	113, 214, 555
AjnI	CCWGG	2 cut(s)	122, 294
AluBI	AGCT	3 cut(s)	23, 210, 477
AluI	AGCT	3 cut(s)	23, 210, 477
Alw21I	GWGCWC	2 cut(s)	322, 684
Alw26I	GTCTC	2 cut(s)	21, 183
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	7 cut(s)	73, 125, 247, 276, 370, 547, 723
ApeKI	GCWGC	5 cut(s)	17, 20, 242, 346, 496
AseI	ATTAAT	1 cut(s)	330
AspLEI	GCGC	3 cut(s)	62, 206, 404
AspS9I	GGNCC	5 cut(s)	126, 277, 371, 467, 548
AsuHPI	GGTGA	2 cut(s)	133, 169
AvaII	GGWCC	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	203
BbrPI	CACGTG	1 cut(s)	609
BbsI	GAAGAC	5 cut(s)	148, 160, 166, 664, 719
Bbv12I	GWGCWC	2 cut(s)	322, 684
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	5 cut(s)	29, 32, 229, 358, 483
BccI	CCATC	1 cut(s)	703
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	124, 296
BcoDI	GTCTC	2 cut(s)	21, 183
BfoI	RGCGCY	2 cut(s)	207, 405
BisI	GCNGC	7 cut(s)	18, 21, 202, 243, 344, 347, 497
BlsI	GCNGC	7 cut(s)	19, 22, 203, 244, 345, 348, 498
Bme1390I	CCNGG	2 cut(s)	124, 296
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	5 cut(s)	126, 277, 371, 467, 548
BmiI	GGNNCC	3 cut(s)	128, 205, 256
BmrFI	CCNGG	2 cut(s)	124, 296
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	5 cut(s)	148, 160, 166, 664, 719
BpmI	CTGGAG	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	609
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	5 cut(s)	195, 219, 250, 273, 294
BsaXI	ACNNNNNCTCC	6 cut(s)	18, 48, 254, 284, 309, 339
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 123, 301, 647
Bse118I	RCCGGY	3 cut(s)	245, 398, 545
Bse1I	ACTGG	2 cut(s)	327, 535
BseBI	CCWGG	2 cut(s)	124, 296
BseDI	CCNNGG	5 cut(s)	195, 219, 250, 273, 294
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	4 cut(s)	48, 123, 301, 647
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	327, 535
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	5 cut(s)	29, 32, 229, 358, 483
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	7 cut(s)	75, 127, 249, 278, 372, 549, 725
BshNI	GGYRCC	1 cut(s)	203
BsiHKAI	GWGCWC	2 cut(s)	322, 684
BsiSI	CCGG	3 cut(s)	246, 399, 546
BslI	CCNNNNNNNGG	4 cut(s)	48, 123, 301, 647
BsmAI	GTCTC	2 cut(s)	21, 183
BsmBI	CGTCTC	1 cut(s)	21
BsnI	GGCC	7 cut(s)	75, 127, 249, 278, 372, 549, 725
Bsp1286I	GDGCHC	3 cut(s)	227, 322, 684
Bsp143I	GATC	1 cut(s)	9
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	5 cut(s)	32, 201, 283, 344, 564
BspANI	GGCC	7 cut(s)	75, 127, 249, 278, 372, 549, 725
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	3 cut(s)	128, 205, 256
BspT107I	GGYRCC	1 cut(s)	203
BsrFI	RCCGGY	3 cut(s)	245, 398, 545
BsrI	ACTGG	2 cut(s)	327, 535
BssAI	RCCGGY	3 cut(s)	245, 398, 545
BssECI	CCNNGG	5 cut(s)	195, 219, 250, 273, 294
BssMI	GATC	1 cut(s)	9
BssNAI	GTATAC	1 cut(s)	543
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	3 cut(s)	195, 250, 273
Bst1107I	GTATAC	1 cut(s)	543
Bst2UI	CCWGG	2 cut(s)	124, 296
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	2 cut(s)	140, 272
BstACI	GRCGYC	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	609
BstC8I	GCNNGC	3 cut(s)	208, 247, 501
BstDEI	CTNAG	1 cut(s)	411
BstDSI	CCRYGG	2 cut(s)	219, 273
BstF5I	GGATG	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	32
BstH2I	RGCGCY	2 cut(s)	207, 405
BstHHI	GCGC	3 cut(s)	62, 206, 404
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	2 cut(s)	21, 183
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 29, 207, 305, 355, 659
BstNI	CCWGG	2 cut(s)	124, 296
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	122, 294
BstSLI	GKGCMC	1 cut(s)	227
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	5 cut(s)	29, 32, 229, 358, 483
BstV2I	GAAGAC	5 cut(s)	148, 160, 166, 664, 719
BstZ17I	GTATAC	1 cut(s)	543
BsuRI	GGCC	7 cut(s)	75, 127, 249, 278, 372, 549, 725
BtgI	CCRYGG	2 cut(s)	219, 273
BtsCI	GGATG	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	225, 320
Cac8I	GCNNGC	3 cut(s)	208, 247, 501
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	3 cut(s)	62, 206, 404
Cfr10I	RCCGGY	3 cut(s)	245, 398, 545
Cfr13I	GGNCC	5 cut(s)	126, 277, 371, 467, 548
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	352
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	3 cut(s)	274, 340, 361
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	411
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	140, 272
EarI	CTCTTC	2 cut(s)	140, 272
Eco130I	CCWWGG	3 cut(s)	195, 250, 273
Eco147I	AGGCCT	1 cut(s)	725
Eco47I	GGWCC	1 cut(s)	467
Eco72I	CACGTG	1 cut(s)	609
EcoO109I	RGGNCCY	2 cut(s)	371, 467
EcoRII	CCWGG	2 cut(s)	122, 294
EcoT14I	CCWWGG	3 cut(s)	195, 250, 273
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
ErhI	CCWWGG	3 cut(s)	195, 250, 273
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	3 cut(s)	277, 343, 364
FatI	CATG	3 cut(s)	273, 339, 360
FauI	CCCGC	1 cut(s)	571
FauNDI	CATATG	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	542
Fnu4HI	GCNGC	7 cut(s)	18, 21, 202, 243, 344, 347, 497
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	7 cut(s)	18, 21, 202, 243, 344, 347, 497
FspI	TGCGCA	1 cut(s)	61
GlaI	GCGC	3 cut(s)	61, 205, 403
GluI	GCNGC	7 cut(s)	18, 21, 202, 243, 344, 347, 497
GsuI	CTGGAG	1 cut(s)	45
HaeII	RGCGCY	2 cut(s)	207, 405
HaeIII	GGCC	7 cut(s)	75, 127, 249, 278, 372, 549, 725
HapII	CCGG	3 cut(s)	246, 399, 546
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	3 cut(s)	62, 206, 404
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	3 cut(s)	277, 343, 364
Hin6I	GCGC	3 cut(s)	60, 204, 402
HinP1I	GCGC	3 cut(s)	60, 204, 402
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	2 cut(s)	191, 559
HpaII	CCGG	3 cut(s)	246, 399, 546
HphI	GGTGA	2 cut(s)	133, 169
Hpy166II	GTNNAC	3 cut(s)	388, 543, 592
Hpy188I	TCNGA	2 cut(s)	188, 259
Hpy188III	TCNNGA	2 cut(s)	82, 421
Hpy8I	GTNNAC	3 cut(s)	388, 543, 592
HpyAV	CCTTC	6 cut(s)	52, 190, 384, 561, 652, 715
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4IV	ACGT	1 cut(s)	608
HpyCH4V	TGCA	2 cut(s)	394, 518
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 29, 207, 305, 355, 659
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	608
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	277, 343, 364
HspAI	GCGC	3 cut(s)	60, 204, 402
KasI	GGCGCC	1 cut(s)	203
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	4 cut(s)	260, 317, 613, 650
Lsp1109I	GCAGC	5 cut(s)	29, 32, 229, 358, 483
LweI	GCATC	1 cut(s)	71
MaeII	ACGT	1 cut(s)	608
MaeIII	GTNAC	2 cut(s)	508, 526
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	9 cut(s)	127, 148, 160, 166, 259, 664, 690, 721, 724
MfeI	CAATTG	1 cut(s)	595
MhlI	GDGCHC	3 cut(s)	227, 322, 684
MluCI	AATT	1 cut(s)	595
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	282
MroNI	GCCGGC	1 cut(s)	245
MseI	TTAA	2 cut(s)	330, 380
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	3 cut(s)	246, 399, 546
MspR9I	CCNGG	2 cut(s)	124, 296
MunI	CAATTG	1 cut(s)	595
MvaI	CCWGG	2 cut(s)	124, 296
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	6 cut(s)	14, 29, 207, 305, 355, 659
NaeI	GCCGGC	1 cut(s)	247
NarI	GGCGCC	1 cut(s)	204
NcoI	CCATGG	1 cut(s)	273
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	1 cut(s)	9
NgoMIV	GCCGGC	1 cut(s)	245
NlaIII	CATG	3 cut(s)	277, 343, 364
NlaIV	GGNNCC	3 cut(s)	128, 205, 256
NsbI	TGCGCA	1 cut(s)	61
NspI	RCATGY	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	725
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	559
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	7 cut(s)	19, 22, 203, 244, 345, 348, 498
PleI	GAGTC	1 cut(s)	185
PluTI	GGCGCC	1 cut(s)	207
PmaCI	CACGTG	1 cut(s)	609
PmlI	CACGTG	1 cut(s)	609
PpsI	GAGTC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	609
PpuMI	RGGWCCY	1 cut(s)	467
PshBI	ATTAAT	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	122, 294
PspCI	CACGTG	1 cut(s)	609
PspGI	CCWGG	2 cut(s)	122, 294
PspN4I	GGNNCC	3 cut(s)	128, 205, 256
PspPI	GGNCC	5 cut(s)	126, 277, 371, 467, 548
PspPPI	RGGWCCY	1 cut(s)	467
PstNI	CAGNNNCTG	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	2 cut(s)	330, 380
SatI	GCNGC	7 cut(s)	18, 21, 202, 243, 344, 347, 497
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	5 cut(s)	126, 277, 371, 467, 548
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	124, 296
SduI	GDGCHC	3 cut(s)	227, 322, 684
SfaNI	GCATC	1 cut(s)	71
SfoI	GGCGCC	1 cut(s)	205
SinI	GGWCC	1 cut(s)	467
Sse9I	AATT	1 cut(s)	595
SseBI	AGGCCT	1 cut(s)	725
SsiI	CCGC	5 cut(s)	32, 201, 283, 344, 564
SspDI	GGCGCC	1 cut(s)	203
SspI	AATATT	1 cut(s)	657
StuI	AGGCCT	1 cut(s)	725
StyD4I	CCNGG	2 cut(s)	122, 294
StyI	CCWWGG	3 cut(s)	195, 250, 273
TaaI	ACNGT	1 cut(s)	514
TaiI	ACGT	1 cut(s)	611
TasI	AATT	1 cut(s)	595
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	2 cut(s)	204, 346
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	2 cut(s)	330, 380
Tru9I	TTAA	2 cut(s)	330, 380
TscAI	CASTG	2 cut(s)	232, 327
TseI	GCWGC	5 cut(s)	17, 20, 242, 346, 496
TspDTI	ATGAA	5 cut(s)	127, 172, 418, 572, 634
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	2 cut(s)	232, 327
Van91I	CCANNNNNTGG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	467
VspI	ATTAAT	1 cut(s)	330
XceI	RCATGY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.