Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002246

Physical Location & Seq

Genomic Coordinates Forward (+)

137401 .. 144369

Gene Structure 6969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G000900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGGTGCGATTAAGGCAGCTGTTGGAGACACTATGCTCACCTTCTTGTGGATTTCCTGCGCATCGATGCTTGGACTAGCCACCAGCTTCATCGCAAATGCTGTTGGGGTTCAGGACCTTCCATGGCCGCCTCTTTTCATCACCACCGCCCTTGTCTTCGTCCTTGTATTTGTCTTCACCTTCCTCGGAGACGCCTTGGGTGGGGCCAGCTTCAACCCCACTGGCACTGCCTCCTTTTACGCCGCCGGCCTTGGCGCCGACACCCTCCTCTCCATGGCCCTCCGCTTCCCTGCTCAGGCTTTCGGTGCTGTGGGTGGAGTACTAGCTATTAACGAGGTCATGCCACATCAGTACAAGCACATGCTTGGAGGGCCTTCATTAAAAGTTGACGTGCATACTGGAGCTATCGTTGAGGGGGTATTGACTTTCGTAATATCCTTTCTTGTCCTTATAATCATACTCAAGGGTCCTCGTAGCCCAGTTTTGAAGATGTTGCTACTTTCTGTGGTCACTGTCACATTGGTTGTCTCCGGTTCTGTCTATACCGGCCCTTCAATGAATCCAGCCAATGCATTTGGTTGGGCATATCTAAACAATTGGCACAACACATGGGAGCAGTTTTATGTTTATTGGATTTGCCCTTTCATAGGAGCAATATTGGCTGGTTGGATCTTCCGAGCTGTCTTTCCCCCCCTACTTGCCAAAGGCAAAAAGAAGAAGGCCAAGAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012505 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

245

Amino Acids

26.04

Weight (kDa)

9.52

Isoelectric Point (pI)

27.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04090 AT5G18290 AT5G18290
fragaria_vesca	FvH4_6g00600 FvH4_6g00600 FvH4_6g43020 FvH4_6g43030
malus_domestica	MD09G1110400.v1.1 MD14G1000500.v1.1 MD17G1098100.v1.1
prunus_persica	Prupe.3G216100_v2.0.a1 Prupe.7G000900_v2.0.a1
pyrus_communis	pycom09g03280 pycom49g00030
rosa_chinensis	RchiOBHm_Chr2g0159011 RchiOBHm_Chr2g0159031 RchiOBHm_Chr3g0497551 RchiOBHm_Chr5g0069711
rosa_laevigata	RLG00000021130 RLG00000021131 RLG00000022454
rosa_multiflora	Rmu_co8255671.1_g000001 Rmu_sc0000212.1_g000020 Rmu_sc0008836.1_g000002 Rmu_sc0012866.1_g000001 Rmu_ssc0000226.1_g000032
rosa_roxburghii	Rroxscaffold_6G00387940
rosa_rugosa	Rorug02G0473400 Rorug02G0473500 Rorug03G0293400 Rorug03G0293400 Rorug03G0293400
rosa_samantha	Rh2BG552800 Rh2BG552900 Rh2DG562800 Rh2DG562900 Rh3AG337500 Rh3BG375800 Rh3CG371800 Rh3DG372400
rosa_wichuraiana	Rw0G011440 Rw2G044700 Rw2G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	452
Acc16I	TGCGCA	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	254
AciI	CCGC	4 cut(s)	128, 147, 243, 283
AclWI	GGATC	1 cut(s)	677
AcoI	YGGCCR	1 cut(s)	125
AcyI	GRCGYC	2 cut(s)	192, 255
AfaI	GTAC	2 cut(s)	321, 353
AfiI	CCNNNNNNNGG	5 cut(s)	48, 201, 274, 295, 647
AgsI	TTSAA	3 cut(s)	214, 487, 555
AjiI	CACGTC	1 cut(s)	391
AluBI	AGCT	6 cut(s)	20, 87, 210, 326, 404, 680
AluI	AGCT	6 cut(s)	20, 87, 210, 326, 404, 680
Alw26I	GTCTC	3 cut(s)	21, 183, 532
AlwI	GGATC	1 cut(s)	677
AoxI	GGCC	8 cut(s)	125, 204, 247, 276, 371, 547, 720, 729
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	62, 257
AspS9I	GGNCC	6 cut(s)	115, 204, 277, 371, 467, 548
AsuHPI	GGTGA	3 cut(s)	31, 133, 169
AvaII	GGWCC	2 cut(s)	115, 467
BanI	GGYRCC	1 cut(s)	254
BbsI	GAAGAC	2 cut(s)	148, 166
BbvI	GCAGC	1 cut(s)	29
BcoDI	GTCTC	3 cut(s)	21, 183, 532
BfaI	CTAG	2 cut(s)	77, 323
BfoI	RGCGCY	1 cut(s)	258
BglI	GCCNNNNNGGC	1 cut(s)	728
BisI	GCNGC	3 cut(s)	18, 128, 243
BlsI	GCNGC	3 cut(s)	19, 129, 244
BmcAI	AGTACT	1 cut(s)	321
Bme18I	GGWCC	2 cut(s)	115, 467
BmgBI	CACGTC	1 cut(s)	391
BmgT120I	GGNCC	6 cut(s)	115, 204, 277, 371, 467, 548
BmiI	GGNNCC	3 cut(s)	205, 256, 468
BmrI	ACTGGG	1 cut(s)	473
BmsI	GCATC	2 cut(s)	57, 71
BmuI	ACTGGG	1 cut(s)	473
BpiI	GAAGAC	2 cut(s)	148, 166
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	446
Bsa29I	ATCGAT	1 cut(s)	65
BsaHI	GRCGYC	2 cut(s)	192, 255
BsaJI	CCNNGG	5 cut(s)	122, 184, 195, 250, 273
BsaWI	WCCGGW	1 cut(s)	530
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	5 cut(s)	48, 201, 274, 295, 647
Bse118I	RCCGGY	2 cut(s)	245, 545
Bse1I	ACTGG	3 cut(s)	226, 403, 479
BseCI	ATCGAT	1 cut(s)	65
BseDI	CCNNGG	5 cut(s)	122, 184, 195, 250, 273
BseLI	CCNNNNNNNGG	5 cut(s)	48, 201, 274, 295, 647
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	3 cut(s)	226, 403, 479
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	29
BshFI	GGCC	8 cut(s)	127, 206, 249, 278, 373, 549, 722, 731
BshNI	GGYRCC	1 cut(s)	254
BshVI	ATCGAT	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	246, 531, 546
BslI	CCNNNNNNNGG	5 cut(s)	48, 201, 274, 295, 647
BsmAI	GTCTC	3 cut(s)	21, 183, 532
BsmBI	CGTCTC	1 cut(s)	183
BsnI	GGCC	8 cut(s)	127, 206, 249, 278, 373, 549, 722, 731
Bsp143I	GATC	1 cut(s)	669
Bsp19I	CCATGG	2 cut(s)	122, 273
BspACI	CCGC	4 cut(s)	128, 147, 243, 283
BspANI	GGCC	8 cut(s)	127, 206, 249, 278, 373, 549, 722, 731
BspCNI	CTCAG	1 cut(s)	307
BspDI	ATCGAT	1 cut(s)	65
BspLI	GGNNCC	3 cut(s)	205, 256, 468
BspPI	GGATC	1 cut(s)	677
BspT107I	GGYRCC	1 cut(s)	254
BsrFI	RCCGGY	2 cut(s)	245, 545
BsrI	ACTGG	3 cut(s)	226, 403, 479
BssAI	RCCGGY	2 cut(s)	245, 545
BssECI	CCNNGG	5 cut(s)	122, 184, 195, 250, 273
BssMI	GATC	1 cut(s)	669
BssNI	GRCGYC	2 cut(s)	192, 255
BssT1I	CCWWGG	4 cut(s)	122, 195, 250, 273
Bst4CI	ACNGT	1 cut(s)	514
BstACI	GRCGYC	2 cut(s)	192, 255
BstC8I	GCNNGC	2 cut(s)	208, 247
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	2 cut(s)	122, 273
BstENI	CCTNNNNNAGG	1 cut(s)	645
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	2 cut(s)	62, 257
BstKTI	GATC	1 cut(s)	672
BstMAI	GTCTC	3 cut(s)	21, 183, 532
BstMBI	GATC	1 cut(s)	669
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 305, 370, 659, 728
BstNSI	RCATGY	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	2 cut(s)	148, 166
BstX2I	RGATCY	1 cut(s)	669
BstYI	RGATCY	1 cut(s)	669
Bsu15I	ATCGAT	1 cut(s)	65
BsuRI	GGCC	8 cut(s)	127, 206, 249, 278, 373, 549, 722, 731
BsuTUI	ATCGAT	1 cut(s)	65
BtgI	CCRYGG	2 cut(s)	122, 273
BtgZI	GCGATG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	3 cut(s)	219, 225, 510
Cac8I	GCNNGC	2 cut(s)	208, 247
CfoI	GCGC	2 cut(s)	62, 257
Cfr10I	RCCGGY	2 cut(s)	245, 545
Cfr13I	GGNCC	6 cut(s)	115, 204, 277, 371, 467, 548
ClaI	ATCGAT	1 cut(s)	65
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	320, 352
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	5 cut(s)	123, 274, 340, 361, 609
CviQI	GTAC	2 cut(s)	320, 352
DdeI	CTNAG	1 cut(s)	294
DinI	GGCGCC	1 cut(s)	256
DpnI	GATC	1 cut(s)	671
DpnII	GATC	1 cut(s)	669
EaeI	YGGCCR	1 cut(s)	125
Eco130I	CCWWGG	4 cut(s)	122, 195, 250, 273
Eco147I	AGGCCT	1 cut(s)	731
Eco47I	GGWCC	2 cut(s)	115, 467
EcoNI	CCTNNNNNAGG	1 cut(s)	645
EcoO109I	RGGNCCY	3 cut(s)	115, 371, 467
EcoT14I	CCWWGG	4 cut(s)	122, 195, 250, 273
EcoT22I	ATGCAT	1 cut(s)	574
EgeI	GGCGCC	1 cut(s)	256
EheI	GGCGCC	1 cut(s)	256
ErhI	CCWWGG	4 cut(s)	122, 195, 250, 273
Esp3I	CGTCTC	1 cut(s)	183
FaeI	CATG	5 cut(s)	126, 277, 343, 364, 612
FatI	CATG	5 cut(s)	122, 273, 339, 360, 608
Fnu4HI	GCNGC	3 cut(s)	18, 128, 243
Fsp4HI	GCNGC	3 cut(s)	18, 128, 243
FspBI	CTAG	2 cut(s)	77, 323
FspI	TGCGCA	1 cut(s)	61
GlaI	GCGC	2 cut(s)	61, 256
GluI	GCNGC	3 cut(s)	18, 128, 243
GsuI	CTGGAG	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	8 cut(s)	127, 206, 249, 278, 373, 549, 722, 731
HapII	CCGG	3 cut(s)	246, 531, 546
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	2 cut(s)	62, 257
Hin1I	GRCGYC	2 cut(s)	192, 255
Hin1II	CATG	5 cut(s)	126, 277, 343, 364, 612
Hin6I	GCGC	2 cut(s)	60, 255
HinP1I	GCGC	2 cut(s)	60, 255
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	1 cut(s)	559
HpaII	CCGG	3 cut(s)	246, 531, 546
HphI	GGTGA	3 cut(s)	31, 133, 169
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	2 cut(s)	188, 677
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	7 cut(s)	52, 128, 190, 384, 561, 712, 721
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	2 cut(s)	394, 572
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 305, 370, 659, 728
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	390
Hsp92I	GRCGYC	2 cut(s)	192, 255
Hsp92II	CATG	5 cut(s)	126, 277, 343, 364, 612
HspAI	GCGC	2 cut(s)	60, 255
KasI	GGCGCC	1 cut(s)	254
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	669
LmnI	GCTCC	3 cut(s)	401, 613, 650
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	2 cut(s)	57, 71
MaeI	CTAG	2 cut(s)	77, 323
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	508, 514
MalI	GATC	1 cut(s)	671
MboI	GATC	1 cut(s)	669
MboII	GAAGA	5 cut(s)	148, 166, 499, 664, 727
MfeI	CAATTG	1 cut(s)	595
MflI	RGATCY	1 cut(s)	669
MluCI	AATT	1 cut(s)	595
Mly113I	GGCGCC	1 cut(s)	255
MmeI	TCCRAC	2 cut(s)	4, 647
Mph1103I	ATGCAT	1 cut(s)	574
MroNI	GCCGGC	1 cut(s)	245
MseI	TTAA	3 cut(s)	12, 330, 380
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	3 cut(s)	246, 531, 546
MunI	CAATTG	1 cut(s)	595
MwoI	GCNNNNNNNGC	5 cut(s)	14, 305, 370, 659, 728
NaeI	GCCGGC	1 cut(s)	247
NarI	GGCGCC	1 cut(s)	255
NcoI	CCATGG	2 cut(s)	122, 273
NdeII	GATC	1 cut(s)	669
NgoMIV	GCCGGC	1 cut(s)	245
NlaIII	CATG	5 cut(s)	126, 277, 343, 364, 612
NlaIV	GGNNCC	3 cut(s)	205, 256, 468
NmuCI	GTSAC	2 cut(s)	508, 514
NsbI	TGCGCA	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	574
NspI	RCATGY	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	731
PdiI	GCCGGC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	559
PkrI	GCNGC	3 cut(s)	19, 129, 244
PluTI	GGCGCC	1 cut(s)	258
PpuMI	RGGWCCY	2 cut(s)	115, 467
PsiI	TTATAA	1 cut(s)	452
Psp5II	RGGWCCY	2 cut(s)	115, 467
PspN4I	GGNNCC	3 cut(s)	205, 256, 468
PspPI	GGNCC	6 cut(s)	115, 204, 277, 371, 467, 548
PspPPI	RGGWCCY	2 cut(s)	115, 467
PsuI	RGATCY	1 cut(s)	669
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	2 cut(s)	321, 353
RsaNI	GTAC	2 cut(s)	320, 352
SaqAI	TTAA	3 cut(s)	12, 330, 380
SatI	GCNGC	3 cut(s)	18, 128, 243
Sau3AI	GATC	1 cut(s)	669
Sau96I	GGNCC	6 cut(s)	115, 204, 277, 371, 467, 548
ScaI	AGTACT	1 cut(s)	321
SfaNI	GCATC	2 cut(s)	57, 71
SfiI	GGCCNNNNNGGCC	1 cut(s)	728
SfoI	GGCGCC	1 cut(s)	256
SinI	GGWCC	2 cut(s)	115, 467
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	1 cut(s)	595
SseBI	AGGCCT	1 cut(s)	731
SsiI	CCGC	4 cut(s)	128, 147, 243, 283
SspDI	GGCGCC	1 cut(s)	254
SspI	AATATT	1 cut(s)	657
SspMI	CTAG	2 cut(s)	77, 323
StuI	AGGCCT	1 cut(s)	731
StyI	CCWWGG	4 cut(s)	122, 195, 250, 273
TaaI	ACNGT	1 cut(s)	514
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	595
TatI	WGTACW	2 cut(s)	319, 351
TauI	GCSGC	2 cut(s)	130, 245
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	3 cut(s)	12, 330, 380
Tru9I	TTAA	3 cut(s)	12, 330, 380
TscAI	CASTG	3 cut(s)	226, 232, 517
TseFI	GTSAC	2 cut(s)	508, 514
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	508, 514
TspDTI	ATGAA	5 cut(s)	79, 127, 366, 572, 634
TspRI	CASTG	3 cut(s)	226, 232, 517
VpaK11BI	GGWCC	2 cut(s)	115, 467
XagI	CCTNNNNNAGG	1 cut(s)	645
XceI	RCATGY	1 cut(s)	364
XspI	CTAG	2 cut(s)	77, 323
ZrmI	AGTACT	1 cut(s)	321
Zsp2I	ATGCAT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.