Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002246

Physical Location & Seq

Genomic Coordinates Forward (+)

351951 .. 356021

Gene Structure 4071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00600.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGCGCGATGAAGGCTGCTGTGGGAGATGCGGTGGTGACGTTTATGTGGGTCTTCTGCGCGTCGACGCTGGGACTGATGACAAGTCTGATCGCAAATGTAATCGGGGTTCAAGGCTTCTGGGCTTCTTTCGGCATCACCACTGCCCTCGTCTTCTTCCTCGTCTTGGTCTTCAACATGATCGGTGACGCCTTGGGTGGGGCCAGCTTCAACCCCACCGGCACTGCCTCTTTCTACGCCGCCGGCGTTGGTGCCGATACCCTCTTCTCCATGGCCCTCCGCTTTCCGGCTCAGACTTTGGGTGCTGTGGGTGGCGCTCTGGCTATTAAGGAGGTCGTTCCCGCTCAGTACAACCACATGATTGGAGGCCCTTCCTTGAAAGTTGACTTGCACACCGGGGCCATTGCCGAGGGGCTCTTGACTTTCCTTATCACCTTCCTTGTCCTTGTCATCATCCTCAAGGGTCCCCGTAGCTCACTCTTGAAATCATTGCTTCTTGCAGTGGTTACTGTGGCATTGGTTGTTGCTGGTTCCGTCTATACTGGGCCTTCAATGAATCCTGCTAATGCATTTGGTTGGGCATATGTAGACAATCGACACAACACATGGGAGCAGTTCTATGTTTATTGGATTTGCCCTTTCATAGGAGCAATATTGGCTTCTTGGGTCTTTCGAGCTCTCTTTCCCCCTCCAACCAAACAGAAGAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0012505 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

238

Amino Acids

25.06

Weight (kDa)

9.17

Isoelectric Point (pI)

19.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	3 - 189	1.6e-08	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04090 AT5G18290 AT5G18290
fragaria_vesca	FvH4_6g00600 FvH4_6g00600 FvH4_6g43020 FvH4_6g43030
malus_domestica	MD09G1110400.v1.1 MD14G1000500.v1.1 MD17G1098100.v1.1
prunus_persica	Prupe.3G216100_v2.0.a1 Prupe.7G000900_v2.0.a1
pyrus_communis	pycom09g03280 pycom49g00030
rosa_chinensis	RchiOBHm_Chr2g0159011 RchiOBHm_Chr2g0159031 RchiOBHm_Chr3g0497551 RchiOBHm_Chr5g0069711
rosa_laevigata	RLG00000021130 RLG00000021131 RLG00000022454
rosa_multiflora	Rmu_co8255671.1_g000001 Rmu_sc0000212.1_g000020 Rmu_sc0008836.1_g000002 Rmu_sc0012866.1_g000001 Rmu_ssc0000226.1_g000032
rosa_roxburghii	Rroxscaffold_6G00387940
rosa_rugosa	Rorug02G0473400 Rorug02G0473500 Rorug03G0293400 Rorug03G0293400 Rorug03G0293400
rosa_samantha	Rh2BG552800 Rh2BG552900 Rh2DG562800 Rh2DG562900 Rh3AG337500 Rh3BG375800 Rh3CG371800 Rh3DG372400
rosa_wichuraiana	Rw0G011440 Rw2G044700 Rw2G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccBSI	CCGCTC	1 cut(s)	344
AccI	GTMKAC	2 cut(s)	65, 588
AccII	CGCG	2 cut(s)	8, 62
AciI	CCGC	4 cut(s)	32, 240, 280, 342
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	4 cut(s)	166, 198, 286, 644
AgsI	TTSAA	6 cut(s)	113, 175, 211, 379, 484, 552
AluBI	AGCT	4 cut(s)	207, 474, 677, 710
AluI	AGCT	4 cut(s)	207, 474, 677, 710
Alw21I	GWGCWC	1 cut(s)	679
AoxI	GGCC	5 cut(s)	201, 273, 367, 399, 545
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	3 cut(s)	8, 62, 317
AspS9I	GGNCC	6 cut(s)	201, 274, 368, 399, 464, 545
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	4 cut(s)	49, 130, 197, 424
AvaII	GGWCC	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	2 cut(s)	417, 679
BbsI	GAAGAC	3 cut(s)	46, 145, 163
Bbv12I	GWGCWC	1 cut(s)	679
BbvI	GCAGC	1 cut(s)	4
BcnI	CCSGG	1 cut(s)	397
BfoI	RGCGCY	1 cut(s)	318
BisI	GCNGC	2 cut(s)	18, 240
BlsI	GCNGC	2 cut(s)	19, 241
Bme1390I	CCNGG	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	6 cut(s)	201, 274, 368, 399, 464, 545
BmiI	GGNNCC	6 cut(s)	202, 253, 400, 465, 466, 532
BmrFI	CCNGG	1 cut(s)	397
BmrI	ACTGGG	1 cut(s)	552
BmsI	GCATC	2 cut(s)	19, 144
BmuI	ACTGGG	1 cut(s)	552
BpiI	GAAGAC	3 cut(s)	46, 145, 163
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	4 cut(s)	192, 270, 396, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 198, 286, 644
Bse118I	RCCGGY	2 cut(s)	218, 242
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	2 cut(s)	402, 488
BseDI	CCNNGG	4 cut(s)	192, 270, 396, 408
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	4 cut(s)	166, 198, 286, 644
BseMI	GCAATG	2 cut(s)	402, 488
BseMII	CTCAG	2 cut(s)	305, 359
BseNI	ACTGG	1 cut(s)	547
BseXI	GCAGC	1 cut(s)	4
BseYI	CCCAGC	1 cut(s)	70
Bsh1236I	CGCG	2 cut(s)	8, 62
BshFI	GGCC	5 cut(s)	203, 275, 369, 401, 547
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	679
BsiSI	CCGG	4 cut(s)	219, 243, 287, 396
BslFI	GGGAC	2 cut(s)	87, 450
BslI	CCNNNNNNNGG	4 cut(s)	166, 198, 286, 644
BsmFI	GGGAC	2 cut(s)	87, 450
BsnI	GGCC	5 cut(s)	203, 275, 369, 401, 547
Bsp1286I	GDGCHC	2 cut(s)	417, 679
Bsp143I	GATC	2 cut(s)	90, 180
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	4 cut(s)	32, 240, 280, 342
BspANI	GGCC	5 cut(s)	203, 275, 369, 401, 547
BspCNI	CTCAG	2 cut(s)	304, 358
BspFNI	CGCG	2 cut(s)	8, 62
BspLI	GGNNCC	6 cut(s)	202, 253, 400, 465, 466, 532
BspT107I	GGYRCC	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	344
BsrDI	GCAATG	2 cut(s)	402, 488
BsrFI	RCCGGY	2 cut(s)	218, 242
BsrI	ACTGG	1 cut(s)	547
BssAI	RCCGGY	2 cut(s)	218, 242
BssECI	CCNNGG	4 cut(s)	192, 270, 396, 408
BssMI	GATC	2 cut(s)	90, 180
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	192, 270
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	205, 244
BstDEI	CTNAG	2 cut(s)	291, 345
BstDSI	CCRYGG	1 cut(s)	270
BstENI	CCTNNNNNAGG	1 cut(s)	642
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	2 cut(s)	8, 62
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	3 cut(s)	8, 62, 317
BstKTI	GATC	2 cut(s)	93, 183
BstMBI	GATC	2 cut(s)	90, 180
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 656
BstSCI	CCNGG	1 cut(s)	395
BstUI	CGCG	2 cut(s)	8, 62
BstV1I	GCAGC	1 cut(s)	4
BstV2I	GAAGAC	3 cut(s)	46, 145, 163
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuRI	GGCC	5 cut(s)	203, 275, 369, 401, 547
BtgI	CCRYGG	1 cut(s)	270
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	453
BtsI	GCAGTG	3 cut(s)	141, 222, 507
BtsIMutI	CAGTG	3 cut(s)	141, 222, 507
Cac8I	GCNNGC	2 cut(s)	205, 244
CfoI	GCGC	3 cut(s)	8, 62, 317
Cfr10I	RCCGGY	2 cut(s)	218, 242
Cfr13I	GGNCC	6 cut(s)	201, 274, 368, 399, 464, 545
CseI	GACGC	3 cut(s)	51, 76, 197
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	4 cut(s)	178, 271, 358, 606
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	2 cut(s)	291, 345
DpnI	GATC	2 cut(s)	92, 182
DpnII	GATC	2 cut(s)	90, 180
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	677
Eco130I	CCWWGG	2 cut(s)	192, 270
Eco24I	GRGCYC	2 cut(s)	417, 679
Eco47I	GGWCC	1 cut(s)	464
Eco53kI	GAGCTC	1 cut(s)	677
EcoICRI	GAGCTC	1 cut(s)	677
EcoNI	CCTNNNNNAGG	1 cut(s)	642
EcoO109I	RGGNCCY	2 cut(s)	368, 464
EcoT14I	CCWWGG	2 cut(s)	192, 270
EcoT22I	ATGCAT	1 cut(s)	571
EcoT38I	GRGCYC	2 cut(s)	417, 679
ErhI	CCWWGG	2 cut(s)	192, 270
FaeI	CATG	4 cut(s)	181, 274, 361, 609
FaqI	GGGAC	2 cut(s)	87, 450
FatI	CATG	4 cut(s)	177, 270, 357, 605
FauI	CCCGC	1 cut(s)	349
FauNDI	CATATG	1 cut(s)	583
FblI	GTMKAC	2 cut(s)	65, 588
Fnu4HI	GCNGC	2 cut(s)	18, 240
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	2 cut(s)	417, 679
Fsp4HI	GCNGC	2 cut(s)	18, 240
GlaI	GCGC	3 cut(s)	7, 61, 316
GluI	GCNGC	2 cut(s)	18, 240
GsaI	CCCAGC	1 cut(s)	74
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	5 cut(s)	203, 275, 369, 401, 547
HapII	CCGG	4 cut(s)	219, 243, 287, 396
HgaI	GACGC	3 cut(s)	51, 76, 197
HhaI	GCGC	3 cut(s)	8, 62, 317
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	4 cut(s)	181, 274, 361, 609
Hin6I	GCGC	3 cut(s)	6, 60, 315
HinP1I	GCGC	3 cut(s)	6, 60, 315
HincII	GTYRAC	2 cut(s)	66, 385
HindII	GTYRAC	2 cut(s)	66, 385
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	1 cut(s)	556
HpaII	CCGG	4 cut(s)	219, 243, 287, 396
HphI	GGTGA	4 cut(s)	49, 130, 197, 424
Hpy166II	GTNNAC	3 cut(s)	66, 385, 589
Hpy188I	TCNGA	2 cut(s)	90, 294
Hpy188III	TCNNGA	2 cut(s)	418, 481
Hpy8I	GTNNAC	3 cut(s)	66, 385, 589
Hpy99I	CGWCG	2 cut(s)	67, 70
HpyAV	CCTTC	4 cut(s)	7, 381, 445, 558
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	3 cut(s)	391, 500, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 656
HpyF3I	CTNAG	2 cut(s)	291, 345
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	4 cut(s)	181, 274, 361, 609
HspAI	GCGC	3 cut(s)	6, 60, 315
KflI	GGGWCCC	1 cut(s)	464
KroI	GCCGGC	1 cut(s)	242
KroNI	GCCGGC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	90, 180
LmnI	GCTCC	2 cut(s)	610, 647
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	2 cut(s)	19, 144
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	3 cut(s)	37, 185, 505
MalI	GATC	2 cut(s)	92, 182
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	2 cut(s)	90, 180
MboII	GAAGA	5 cut(s)	46, 145, 148, 163, 256
MhlI	GDGCHC	2 cut(s)	417, 679
Mph1103I	ATGCAT	1 cut(s)	571
MreI	CGCCGGCG	1 cut(s)	242
MroNI	GCCGGC	1 cut(s)	242
MseI	TTAA	1 cut(s)	327
MspI	CCGG	4 cut(s)	219, 243, 287, 396
MspR9I	CCNGG	1 cut(s)	397
MvnI	CGCG	2 cut(s)	8, 62
MwoI	GCNNNNNNNGC	2 cut(s)	14, 656
NaeI	GCCGGC	1 cut(s)	244
NciI	CCSGG	1 cut(s)	397
NcoI	CCATGG	1 cut(s)	270
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	2 cut(s)	90, 180
NgoMIV	GCCGGC	1 cut(s)	242
NlaIII	CATG	4 cut(s)	181, 274, 361, 609
NlaIV	GGNNCC	6 cut(s)	202, 253, 400, 465, 466, 532
NmeAIII	GCCGAG	1 cut(s)	433
NmuCI	GTSAC	2 cut(s)	37, 185
NsiI	ATGCAT	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PdiI	GCCGGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	2 cut(s)	19, 241
PpuMI	RGGWCCY	1 cut(s)	464
Psp124BI	GAGCTC	1 cut(s)	679
Psp5II	RGGWCCY	1 cut(s)	464
PspFI	CCCAGC	1 cut(s)	70
PspN4I	GGNNCC	6 cut(s)	202, 253, 400, 465, 466, 532
PspPI	GGNCC	6 cut(s)	201, 274, 368, 399, 464, 545
PspPPI	RGGWCCY	1 cut(s)	464
PsrI	GAACNNNNNNTAC	2 cut(s)	93, 125
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SacI	GAGCTC	1 cut(s)	679
SalI	GTCGAC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	2 cut(s)	18, 240
Sau3AI	GATC	2 cut(s)	90, 180
Sau96I	GGNCC	6 cut(s)	201, 274, 368, 399, 464, 545
ScrFI	CCNGG	1 cut(s)	397
SduI	GDGCHC	2 cut(s)	417, 679
SetI	ASST	7 cut(s)	44, 209, 336, 437, 476, 679, 712
SfaNI	GCATC	2 cut(s)	19, 144
SgrAI	CRCCGGYG	1 cut(s)	242
SgrDI	CGTCGACG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SsiI	CCGC	4 cut(s)	32, 240, 280, 342
SspI	AATATT	1 cut(s)	654
SstI	GAGCTC	1 cut(s)	679
StyD4I	CCNGG	1 cut(s)	395
StyI	CCWWGG	2 cut(s)	192, 270
TaaI	ACNGT	1 cut(s)	511
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	3 cut(s)	65, 595, 673
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	3 cut(s)	148, 229, 507
TseFI	GTSAC	2 cut(s)	37, 185
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	37, 185
TspDTI	ATGAA	3 cut(s)	26, 569, 631
TspGWI	ACGGA	1 cut(s)	523
TspRI	CASTG	3 cut(s)	148, 229, 507
VpaK11BI	GGWCC	1 cut(s)	464
XagI	CCTNNNNNAGG	1 cut(s)	642
XmiI	GTMKAC	2 cut(s)	65, 588
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.