AT3G07500

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010302
Physical Location & Seq
Forward (+)
2392216 .. 2393778
1563 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07500.1

Sequence Viewer

Length: 654 bp
ATGGAAGGGAACTCTTTACCCGAAGAAGATGTAGAGATGATGGAGAATTCAGATGTAATGAAGACAGTCACAGATGAAGCTTCTCCAATGGTGGAGCCGTTCATTGGTATGGAGTTTGAATCAGAAGAGGCTGCAAAGTCTTTCTATGACAATTACGCTACATGCATGGGTTTCGTTATGCGAGTGGATGCTTTCAGGAGGTCAATGCGAGATGGGACTGTGGTGTGGCGCAGACTCGTGTGTAATAAAGAAGGATTTCGTAGGTCGAGACCTCGGAGAAGCGAGAGTAGAAAGCCTCGGGCTATAACAAGAGAAGGGTGTAAAGCTCTGATTGTTGTGAAAAGAGAGAAATCCGGAACATGGCTTGTTACTAAATTTGAGAAAGAGCATAATCATCCTCTCTTGCCTCTCTCCCCTAATGTTCGCCGGAATTTTCAGCTCCCTCAAACACCGGACGAGAAAGACGCAAAGATTAGGGAGCTGAGTGCAGAGCTGAGCCGAGAGAGAAGGCGTTGTACTGCTTTGCAACAGCAGCTTGATATGGTCCTTAAGGAGATGGAAGAACATTCCAACCATCTCACCATTAACATCAATAGTGTTATCCAAAGTGTTAGAGACATTGAGTCCAATACTTTCACCAAACAACAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

217

Amino Acids

25.31

Weight (kDa)

7.69

Isoelectric Point (pI)

72.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 47 - 136 3.5e-33 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 353
AcsI RAATTY 3 cut(s) 46, 374, 430
AfaI GTAC 1 cut(s) 517
AfiI CCNNNNNNNGG 2 cut(s) 104, 360
AflII CTTAAG 1 cut(s) 548
AgsI TTSAA 1 cut(s) 119
AhdI GACNNNNNGTC 1 cut(s) 622
AluBI AGCT 6 cut(s) 80, 326, 439, 481, 493, 535
AluI AGCT 6 cut(s) 80, 326, 439, 481, 493, 535
Alw26I GTCTC 2 cut(s) 262, 609
Ama87I CYCGRG 1 cut(s) 297
Aor13HI TCCGGA 1 cut(s) 353
ApeKI GCWGC 2 cut(s) 131, 532
ApoI RAATTY 3 cut(s) 46, 374, 430
Asp700I GAANNNNTTC 1 cut(s) 255
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 544
AsuHPI GGTGA 2 cut(s) 571, 628
AvaI CYCGRG 1 cut(s) 297
AvaII GGWCC 1 cut(s) 544
BarI GAAGNNNNNNTAC 2 cut(s) 499, 531
BauI CACGAG 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 118, 544
BccI CCATC 4 cut(s) 34, 206, 550, 582
BceAI ACGGC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BcoDI GTCTC 2 cut(s) 262, 609
BfrI CTTAAG 1 cut(s) 548
BisI GCNGC 2 cut(s) 132, 533
BlpI GCTNAGC 1 cut(s) 494
BlsI GCNGC 2 cut(s) 133, 534
Bme18I GGWCC 1 cut(s) 544
BmeRI GACNNNNNGTC 1 cut(s) 622
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 68
Bpu1102I GCTNAGC 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 2 cut(s) 272, 296
BsaWI WCCGGW 2 cut(s) 353, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 360
BseAI TCCGGA 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 272, 296
BseGI GGATG 2 cut(s) 193, 394
BseLI CCNNNNNNNGG 2 cut(s) 104, 360
BseMII CTCAG 2 cut(s) 473, 485
BseXI GCAGC 2 cut(s) 118, 544
BsgI GTGCAG 1 cut(s) 507
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 3 cut(s) 354, 427, 452
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 2 cut(s) 104, 360
BsmAI GTCTC 2 cut(s) 262, 609
BsmFI GGGAC 1 cut(s) 229
Bso31I GGTCTC 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 297
Bsp13I TCCGGA 1 cut(s) 353
Bsp1720I GCTNAGC 1 cut(s) 494
BspCNI CTCAG 2 cut(s) 474, 486
BspEI TCCGGA 1 cut(s) 353
BspLI GGNNCC 1 cut(s) 96
BspTI CTTAAG 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 272, 296
BssSI CACGAG 1 cut(s) 236
Bst2BI CACGAG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 67, 220
Bst6I CTCTTC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 548
BstDEI CTNAG 2 cut(s) 482, 494
BstF5I GGATG 2 cut(s) 193, 394
BstHHI GCGC 1 cut(s) 231
BstMAI GTCTC 2 cut(s) 262, 609
BstMWI GCNNNNNNNGC 1 cut(s) 532
BstNSI RCATGY 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 118, 544
BstV2I GAAGAC 1 cut(s) 68
BtsCI GGATG 2 cut(s) 193, 394
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 1 cut(s) 544
CseI GACGC 1 cut(s) 473
Csp6I GTAC 1 cut(s) 516
CviAII CATG 3 cut(s) 162, 166, 360
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 2 cut(s) 482, 494
DriI GACNNNNNGTC 1 cut(s) 622
Eam1104I CTCTTC 1 cut(s) 120
Eam1105I GACNNNNNGTC 1 cut(s) 622
EarI CTCTTC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 544
Eco88I CYCGRG 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 167
FaeI CATG 3 cut(s) 165, 169, 363
FaqI GGGAC 1 cut(s) 229
FatI CATG 3 cut(s) 161, 165, 359
Fnu4HI GCNGC 2 cut(s) 132, 533
FokI GGATG 2 cut(s) 200, 381
Fsp4HI GCNGC 2 cut(s) 132, 533
GlaI GCGC 1 cut(s) 230
GluI GCNGC 2 cut(s) 132, 533
HapII CCGG 3 cut(s) 354, 427, 452
HgaI GACGC 1 cut(s) 473
HhaI GCGC 1 cut(s) 231
Hin1II CATG 3 cut(s) 165, 169, 363
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 3 cut(s) 119, 234, 623
HpaII CCGG 3 cut(s) 354, 427, 452
HphI GGTGA 2 cut(s) 571, 628
Hpy188I TCNGA 4 cut(s) 52, 124, 276, 330
Hpy188III TCNNGA 3 cut(s) 196, 267, 354
HpyAV CCTTC 3 cut(s) 245, 308, 501
HpyCH4III ACNGT 2 cut(s) 67, 220
HpyCH4V TGCA 4 cut(s) 134, 165, 488, 526
HpyF10VI GCNNNNNNNGC 1 cut(s) 532
HpyF3I CTNAG 2 cut(s) 482, 494
Hsp92II CATG 3 cut(s) 165, 169, 363
HspAI GCGC 1 cut(s) 229
Kpn2I TCCGGA 1 cut(s) 353
LmnI GCTCC 3 cut(s) 94, 444, 478
LpnPI CCDG 4 cut(s) 181, 367, 440, 465
Lsp1109I GCAGC 2 cut(s) 118, 544
LweI GCATC 1 cut(s) 178
MaeIII GTNAC 2 cut(s) 67, 367
MboII GAAGA 5 cut(s) 35, 38, 73, 137, 572
MluCI AATT 4 cut(s) 46, 151, 374, 430
MlyI GAGTC 2 cut(s) 228, 632
MmeI TCCRAC 1 cut(s) 594
MnlI CCTC 7 cut(s) 121, 192, 282, 306, 408, 417, 453
Mph1103I ATGCAT 1 cut(s) 167
MroI TCCGGA 1 cut(s) 353
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 549, 585
MslI CAYNNNNRTG 1 cut(s) 107
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 3 cut(s) 354, 427, 452
MwoI GCNNNNNNNGC 1 cut(s) 532
NlaIII CATG 3 cut(s) 165, 169, 363
NlaIV GGNNCC 1 cut(s) 96
NmeAIII GCCGAG 1 cut(s) 524
NmuCI GTSAC 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 167
NspI RCATGY 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 2 cut(s) 133, 534
PleI GAGTC 2 cut(s) 228, 631
PpsI GAGTC 2 cut(s) 228, 631
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 544
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 2 cut(s) 549, 585
SatI GCNGC 2 cut(s) 132, 533
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 2 cut(s) 228, 632
SetI ASST 9 cut(s) 82, 203, 266, 274, 328, 441, 483, 495, 537
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 1 cut(s) 544
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 4 cut(s) 46, 151, 374, 430
TaaI ACNGT 2 cut(s) 67, 220
TaqI TCGA 1 cut(s) 266
TasI AATT 4 cut(s) 46, 151, 374, 430
TatI WGTACW 1 cut(s) 515
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 2 cut(s) 549, 585
Tru9I TTAA 2 cut(s) 549, 585
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 131, 532
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 74, 90, 91
Vha464I CTTAAG 1 cut(s) 548
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 3 cut(s) 46, 374, 430
XceI RCATGY 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 255
Zsp2I ATGCAT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.