Rroxscaffold_7G00186270

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010302
Physical Location & Seq
Forward (+)
25616384 .. 25619134
2751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186270.1

Sequence Viewer

Length: 591 bp
ATGGGAAAGAGGCAGCCACATTTGAGGGGGAGTTCAGATATGGAACCGTATGTGGGTATGGAGTTTGAAACAGAAGAGGCTGCCAAGGTGTTCTATGATGCATATGCAACACAGTTGGGATTCATTATGCGGGTTGATGCCTTCCGGAGATCATTGCGTGATGGTAAGGTAGTTTGGCGTAGACTTGTGTGCAATAAAGAGGGATTTCGTAAGACGAGGCCTAAAAGAAGTGAGAACAGGAAGCCTCGGGCAATCACGAGAGAAGGGTGTAAAGCAATGATAGTGGTAAAGAGAGAAAAATCAGGAAAATGGATTGTGACGAGATTTATAAAGGACCATAACCATTCACTGGTAGTTACACCTGCAAATGGTCGCCGGACTGTGATTCTATCTCAAACACCAGATGAAAAAGATATGAAAATTCGAGAGTTGACTGCTGAGCTACAGCGTGAGCGAAAGAGATCTGCAGCTTATCAAGAACAGCTTGACATGGTTTTGAGGGAGATGGAAGAGCATTCCAATCACCTCTCGAGAAACATTGCCGATATAGTTCAAAGTGTGAAAGAGATTGAATCAAAGAGGATAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

196

Amino Acids

22.97

Weight (kDa)

10.03

Isoelectric Point (pI)

59.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 31 - 118 1.7e-32 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AarI CACCTGC 1 cut(s) 370
Acc36I ACCTGC 1 cut(s) 370
AccB7I CCANNNNNTGG 1 cut(s) 349
AccI GTMKAC 1 cut(s) 181
AccIII TCCGGA 1 cut(s) 144
AciI CCGC 1 cut(s) 130
AcsI RAATTY 1 cut(s) 420
AfiI CCNNNNNNNGG 3 cut(s) 53, 349, 368
AgsI TTSAA 3 cut(s) 68, 554, 572
AluBI AGCT 3 cut(s) 442, 470, 484
AluI AGCT 3 cut(s) 442, 470, 484
Ama87I CYCGRG 2 cut(s) 246, 529
Aor13HI TCCGGA 1 cut(s) 144
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 3 cut(s) 13, 80, 467
ApoI RAATTY 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 515
AvaI CYCGRG 2 cut(s) 246, 529
AvaII GGWCC 1 cut(s) 334
BauI CACGAG 1 cut(s) 256
BbvI GCAGC 3 cut(s) 25, 67, 479
BccI CCATC 2 cut(s) 155, 499
BfmI CTRYAG 2 cut(s) 443, 465
BfuAI ACCTGC 1 cut(s) 370
BglII AGATCT 1 cut(s) 461
BisI GCNGC 3 cut(s) 14, 81, 468
BlpI GCTNAGC 1 cut(s) 438
BlsI GCNGC 3 cut(s) 15, 82, 469
Bme18I GGWCC 1 cut(s) 334
BmeT110I CYCGRG 2 cut(s) 246, 529
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 45
BmsI GCATC 2 cut(s) 88, 127
Bpu1102I GCTNAGC 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 84, 245
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 349, 368
Bse1I ACTGG 1 cut(s) 354
Bse3DI GCAATG 3 cut(s) 152, 282, 537
BseAI TCCGGA 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 84, 245
BseLI CCNNNNNNNGG 3 cut(s) 53, 349, 368
BseMI GCAATG 3 cut(s) 152, 282, 537
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 1 cut(s) 354
BseXI GCAGC 3 cut(s) 25, 67, 479
BshFI GGCC 1 cut(s) 220
BsiHKCI CYCGRG 2 cut(s) 246, 529
BsiSI CCGG 2 cut(s) 145, 376
BslI CCNNNNNNNGG 3 cut(s) 53, 349, 368
BsmI GAATGC 1 cut(s) 514
BsnI GGCC 1 cut(s) 220
BsoBI CYCGRG 2 cut(s) 246, 529
Bsp13I TCCGGA 1 cut(s) 144
Bsp143I GATC 2 cut(s) 149, 461
Bsp1720I GCTNAGC 1 cut(s) 438
BspACI CCGC 1 cut(s) 130
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 430
BspEI TCCGGA 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 469
BspMI ACCTGC 1 cut(s) 370
BspQI GCTCTTC 1 cut(s) 504
BsrDI GCAATG 3 cut(s) 152, 282, 537
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 2 cut(s) 84, 245
BssMI GATC 2 cut(s) 149, 461
BssSI CACGAG 1 cut(s) 256
BssT1I CCWWGG 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 256
Bst4CI ACNGT 3 cut(s) 48, 114, 382
Bst6I CTCTTC 2 cut(s) 69, 504
BstDEI CTNAG 1 cut(s) 438
BstKTI GATC 2 cut(s) 152, 464
BstMBI GATC 2 cut(s) 149, 461
BstSFI CTRYAG 2 cut(s) 443, 465
BstV1I GCAGC 3 cut(s) 25, 67, 479
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BsuRI GGCC 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 347
BveI ACCTGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 334
CspCI CAANNNNNGTGG 2 cut(s) 264, 299
CviAII CATG 1 cut(s) 490
CviJI RGCY 8 cut(s) 16, 80, 220, 244, 442, 470, 484, 587
CviKI_1 RGCY 8 cut(s) 16, 80, 220, 244, 442, 470, 484, 587
DdeI CTNAG 1 cut(s) 438
DpnI GATC 2 cut(s) 151, 463
DpnII GATC 2 cut(s) 149, 461
Eam1104I CTCTTC 2 cut(s) 69, 504
EarI CTCTTC 2 cut(s) 69, 504
Eco130I CCWWGG 1 cut(s) 84
Eco147I AGGCCT 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 334
Eco88I CYCGRG 2 cut(s) 246, 529
EcoT14I CCWWGG 1 cut(s) 84
EcoT22I ATGCAT 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 493
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FatI CATG 1 cut(s) 489
FauI CCCGC 1 cut(s) 123
FauNDI CATATG 1 cut(s) 103
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 3 cut(s) 14, 81, 468
Fsp4HI GCNGC 3 cut(s) 14, 81, 468
GluI GCNGC 3 cut(s) 14, 81, 468
HaeIII GGCC 1 cut(s) 220
HapII CCGG 2 cut(s) 145, 376
Hin1II CATG 1 cut(s) 493
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 3 cut(s) 120, 385, 572
HpaII CCGG 2 cut(s) 145, 376
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 2 cut(s) 182, 432
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 7 cut(s) 145, 256, 303, 425, 476, 529, 531
Hpy8I GTNNAC 2 cut(s) 182, 432
HpyAV CCTTC 2 cut(s) 151, 257
HpyCH4III ACNGT 3 cut(s) 48, 114, 382
HpyCH4V TGCA 5 cut(s) 101, 107, 192, 365, 467
HpyF3I CTNAG 1 cut(s) 438
Hsp92II CATG 1 cut(s) 493
Kpn2I TCCGGA 1 cut(s) 144
Kzo9I GATC 2 cut(s) 149, 461
LguI GCTCTTC 1 cut(s) 504
LpnPI CCDG 7 cut(s) 158, 223, 288, 335, 375, 389, 414
Lsp1109I GCAGC 3 cut(s) 25, 67, 479
LweI GCATC 2 cut(s) 88, 127
MaeIII GTNAC 2 cut(s) 316, 355
MalI GATC 2 cut(s) 151, 463
MboI GATC 2 cut(s) 149, 461
MboII GAAGA 2 cut(s) 86, 521
MflI RGATCY 1 cut(s) 461
MluCI AATT 1 cut(s) 420
MnlI CCTC 9 cut(s) 3, 18, 70, 193, 210, 255, 492, 536, 573
Mph1103I ATGCAT 1 cut(s) 103
MroI TCCGGA 1 cut(s) 144
MspI CCGG 2 cut(s) 145, 376
Mva1269I GAATGC 1 cut(s) 514
NdeI CATATG 1 cut(s) 103
NdeII GATC 2 cut(s) 149, 461
NlaIII CATG 1 cut(s) 493
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 316
NsiI ATGCAT 1 cut(s) 103
PaeR7I CTCGAG 1 cut(s) 529
PaqCI CACCTGC 1 cut(s) 370
PceI AGGCCT 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 504
PctI GAATGC 1 cut(s) 514
PfeI GAWTC 3 cut(s) 120, 385, 572
PflMI CCANNNNNTGG 1 cut(s) 349
PkrI GCNGC 3 cut(s) 15, 82, 469
PsiI TTATAA 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 334
PstI CTGCAG 1 cut(s) 469
PsuI RGATCY 1 cut(s) 461
SapI GCTCTTC 1 cut(s) 504
SatI GCNGC 3 cut(s) 14, 81, 468
Sau3AI GATC 2 cut(s) 149, 461
Sau96I GGNCC 1 cut(s) 334
SetI ASST 7 cut(s) 90, 171, 364, 444, 472, 486, 528
SfaNI GCATC 2 cut(s) 88, 127
SfcI CTRYAG 2 cut(s) 443, 465
Sfr274I CTCGAG 1 cut(s) 529
SinI GGWCC 1 cut(s) 334
SlaI CTCGAG 1 cut(s) 529
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 1 cut(s) 420
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 1 cut(s) 130
StuI AGGCCT 1 cut(s) 220
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 48, 114, 382
TaqI TCGA 2 cut(s) 424, 530
TasI AATT 1 cut(s) 420
TfiI GAWTC 3 cut(s) 120, 385, 572
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 3 cut(s) 13, 80, 467
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 3 cut(s) 112, 420, 431
TspRI CASTG 1 cut(s) 354
Van91I CCANNNNNTGG 1 cut(s) 349
VpaK11BI GGWCC 1 cut(s) 334
XapI RAATTY 1 cut(s) 420
XhoI CTCGAG 1 cut(s) 529
XmiI GTMKAC 1 cut(s) 181
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.