RLG00000012885

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010302
Physical Location & Seq
Forward (+)
23477104 .. 23479427
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012885

Sequence Viewer

Length: 678 bp
ATGAAATTGAAGCGAAACATAACTTACTGTATACCCATGGATGAACAACCATCTACGAGCAAAGATGAGGATATGATAGAGAGTTCAAATGGGAAAGAGGCAGCCACATTTGAGGGGAGTTCAGATATGGAACCGTATGTGGGTATGGAGTTTGAAACGGAGGAGGCTGCCAAGGTGTTCTATGATGCATATGCAACACAGTTGGGATTCATTATGCGGGTTGATGCCTTCCGGAGATCATTGCGTGATGGTAAGGTAGTTTGGCGTAGACTTGTGTGCAATAAAGAAGGATTTCGTAAGACGAGGCCCAAAAGAAGTGAGAACAGGAAGCCTCGGGCAATCACGAGAGAAGGGTGTAAAGCAATGATAGTGGTAAAGAGAGAAAAATCAGGAAAATGGATTGTAACGAGATTTATAAAGGACCATAACCATTCACTGGTAGTTACACCTGCAAATGGTCGCCGGACAGTGATTCTATCTCAAACACCAGATGAAAAAGATATGAAAATTCGAGAGTTGACTGCTGAGCTACAGCGTGAGCGAAAGAGGTCTGCAGCCTATCAAGAACAGCTTGACATGGTTTTGAGAGAGATGGAAGAGCATTCCAATCACCTCTCAAGAAACATTGACGATATAGTTCGAAGTGTGAAAGAGATTGAATCGAAGAGGGTAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

226

Amino Acids

26.25

Weight (kDa)

9.38

Isoelectric Point (pI)

59.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 60 - 147 2.3e-32 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
AarI CACCTGC 1 cut(s) 457
Acc36I ACCTGC 1 cut(s) 457
AccB7I CCANNNNNTGG 1 cut(s) 436
AccI GTMKAC 2 cut(s) 31, 268
AccIII TCCGGA 1 cut(s) 231
AciI CCGC 1 cut(s) 217
AcsI RAATTY 1 cut(s) 507
AfiI CCNNNNNNNGG 3 cut(s) 140, 436, 455
AgsI TTSAA 4 cut(s) 10, 87, 155, 659
AluBI AGCT 2 cut(s) 529, 571
AluI AGCT 2 cut(s) 529, 571
Ama87I CYCGRG 1 cut(s) 333
Aor13HI TCCGGA 1 cut(s) 231
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 3 cut(s) 101, 167, 554
ApoI RAATTY 1 cut(s) 507
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 306, 421
AsuHPI GGTGA 1 cut(s) 602
AsuII TTCGAA 1 cut(s) 640
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 1 cut(s) 421
BauI CACGAG 1 cut(s) 343
BbvI GCAGC 3 cut(s) 113, 154, 566
BccI CCATC 3 cut(s) 58, 242, 586
BfaI CTAG 1 cut(s) 676
BfmI CTRYAG 2 cut(s) 530, 552
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 3 cut(s) 102, 168, 555
BlpI GCTNAGC 1 cut(s) 525
BlsI GCNGC 3 cut(s) 103, 169, 556
Bme18I GGWCC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 2 cut(s) 306, 421
BmiI GGNNCC 1 cut(s) 132
BmsI GCATC 2 cut(s) 175, 214
Bpu1102I GCTNAGC 1 cut(s) 525
Bpu14I TTCGAA 1 cut(s) 640
BpuEI CTTGAG 1 cut(s) 601
BsaJI CCNNGG 3 cut(s) 36, 171, 332
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 436, 455
Bse1I ACTGG 1 cut(s) 441
Bse3DI GCAATG 2 cut(s) 239, 369
BseAI TCCGGA 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 36, 171, 332
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 3 cut(s) 140, 436, 455
BseMI GCAATG 2 cut(s) 239, 369
BseMII CTCAG 1 cut(s) 516
BseNI ACTGG 1 cut(s) 441
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 3 cut(s) 113, 154, 566
BshFI GGCC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 2 cut(s) 232, 463
BslI CCNNNNNNNGG 3 cut(s) 140, 436, 455
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 1 cut(s) 307
BsoBI CYCGRG 1 cut(s) 333
Bsp119I TTCGAA 1 cut(s) 640
Bsp13I TCCGGA 1 cut(s) 231
Bsp143I GATC 1 cut(s) 236
Bsp1720I GCTNAGC 1 cut(s) 525
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 1 cut(s) 217
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 1 cut(s) 517
BspEI TCCGGA 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 457
BspQI GCTCTTC 1 cut(s) 591
BspT104I TTCGAA 1 cut(s) 640
BsrDI GCAATG 2 cut(s) 239, 369
BsrI ACTGG 1 cut(s) 441
BssECI CCNNGG 3 cut(s) 36, 171, 332
BssMI GATC 1 cut(s) 236
BssNAI GTATAC 1 cut(s) 32
BssSI CACGAG 1 cut(s) 343
BssT1I CCWWGG 2 cut(s) 36, 171
Bst1107I GTATAC 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 343
Bst4CI ACNGT 4 cut(s) 29, 135, 201, 469
Bst6I CTCTTC 2 cut(s) 591, 659
BstBI TTCGAA 1 cut(s) 640
BstDEI CTNAG 1 cut(s) 525
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 1 cut(s) 239
BstMBI GATC 1 cut(s) 236
BstSFI CTRYAG 2 cut(s) 530, 552
BstV1I GCAGC 3 cut(s) 113, 154, 566
BstZ17I GTATAC 1 cut(s) 32
BsuRI GGCC 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 46
BtsIMutI CAGTG 2 cut(s) 434, 474
BveI ACCTGC 1 cut(s) 457
Cfr13I GGNCC 2 cut(s) 306, 421
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 2 cut(s) 37, 577
CviJI RGCY 8 cut(s) 104, 167, 307, 331, 529, 557, 571, 674
CviKI_1 RGCY 8 cut(s) 104, 167, 307, 331, 529, 557, 571, 674
DdeI CTNAG 1 cut(s) 525
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
Eam1104I CTCTTC 2 cut(s) 591, 659
EarI CTCTTC 2 cut(s) 591, 659
Eco130I CCWWGG 2 cut(s) 36, 171
Eco47I GGWCC 1 cut(s) 421
Eco88I CYCGRG 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 36, 171
EcoT22I ATGCAT 1 cut(s) 190
ErhI CCWWGG 2 cut(s) 36, 171
FaeI CATG 2 cut(s) 40, 580
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FatI CATG 2 cut(s) 36, 576
FauI CCCGC 1 cut(s) 210
FauNDI CATATG 1 cut(s) 190
FblI GTMKAC 2 cut(s) 31, 268
Fnu4HI GCNGC 3 cut(s) 102, 168, 555
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 102, 168, 555
FspBI CTAG 1 cut(s) 676
GluI GCNGC 3 cut(s) 102, 168, 555
HaeIII GGCC 1 cut(s) 307
HapII CCGG 2 cut(s) 232, 463
Hin1II CATG 2 cut(s) 40, 580
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HinfI GANTC 3 cut(s) 207, 472, 659
HpaII CCGG 2 cut(s) 232, 463
HphI GGTGA 1 cut(s) 602
Hpy166II GTNNAC 3 cut(s) 32, 269, 519
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 6 cut(s) 232, 343, 390, 512, 563, 618
Hpy8I GTNNAC 3 cut(s) 32, 269, 519
HpyAV CCTTC 3 cut(s) 238, 281, 344
HpyCH4III ACNGT 4 cut(s) 29, 135, 201, 469
HpyCH4V TGCA 5 cut(s) 188, 194, 279, 452, 554
HpyF3I CTNAG 1 cut(s) 525
Hsp92II CATG 2 cut(s) 40, 580
Kpn2I TCCGGA 1 cut(s) 231
Kzo9I GATC 1 cut(s) 236
LguI GCTCTTC 1 cut(s) 591
LpnPI CCDG 7 cut(s) 245, 310, 375, 422, 462, 476, 501
Lsp1109I GCAGC 3 cut(s) 113, 154, 566
LweI GCATC 2 cut(s) 175, 214
MaeI CTAG 1 cut(s) 676
MaeIII GTNAC 2 cut(s) 403, 442
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MboII GAAGA 2 cut(s) 608, 676
MluCI AATT 2 cut(s) 5, 507
Mph1103I ATGCAT 1 cut(s) 190
MroI TCCGGA 1 cut(s) 231
MroXI GAANNNNTTC 1 cut(s) 291
MspI CCGG 2 cut(s) 232, 463
Mva1269I GAATGC 1 cut(s) 601
NcoI CCATGG 1 cut(s) 36
NdeI CATATG 1 cut(s) 190
NdeII GATC 1 cut(s) 236
NlaIII CATG 2 cut(s) 40, 580
NlaIV GGNNCC 1 cut(s) 132
NsiI ATGCAT 1 cut(s) 190
NspV TTCGAA 1 cut(s) 640
PaqCI CACCTGC 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 591
PctI GAATGC 1 cut(s) 601
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 3 cut(s) 207, 472, 659
PflMI CCANNNNNTGG 1 cut(s) 436
PkrI GCNGC 3 cut(s) 103, 169, 556
PsiI TTATAA 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 2 cut(s) 306, 421
PstI CTGCAG 1 cut(s) 556
SapI GCTCTTC 1 cut(s) 591
SatI GCNGC 3 cut(s) 102, 168, 555
Sau3AI GATC 1 cut(s) 236
Sau96I GGNCC 2 cut(s) 306, 421
SetI ASST 7 cut(s) 177, 258, 451, 531, 551, 573, 615
SfaNI GCATC 2 cut(s) 175, 214
SfcI CTRYAG 2 cut(s) 530, 552
SfuI TTCGAA 1 cut(s) 640
SinI GGWCC 1 cut(s) 421
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
Sse9I AATT 2 cut(s) 5, 507
SsiI CCGC 1 cut(s) 217
SspMI CTAG 1 cut(s) 676
StyI CCWWGG 2 cut(s) 36, 171
TaaI ACNGT 4 cut(s) 29, 135, 201, 469
TaqI TCGA 3 cut(s) 511, 640, 662
TasI AATT 2 cut(s) 5, 507
TfiI GAWTC 3 cut(s) 207, 472, 659
TscAI CASTG 2 cut(s) 441, 474
TseI GCWGC 3 cut(s) 101, 167, 554
TspDTI ATGAA 5 cut(s) 17, 57, 199, 507, 518
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 2 cut(s) 441, 474
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 421
XapI RAATTY 1 cut(s) 507
XmiI GTMKAC 2 cut(s) 31, 268
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 676
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.