Rw6G022550

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010302
Physical Location & Seq
Reverse (-)
44520447 .. 44524845
4399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G022550.1

Sequence Viewer

Length: 642 bp
ATGGATGAACAACCATCTACAAGCAAAGATGAGGATATGATAGAGAGTTCAAATGGGAAAGAGGCAGCCACATTTGAGGGGAGTTCAGATATGGAACCGTATGTGGGTATGGAGTTTGAAACGGAAGAGGCTGCCAAGGTGTTCTATGATGCATATGCAACACAGTTGGGATTCATTATGCGGGTTGATGCCTTTCGGAGATCATTGCGTGATGGTAAGGTAGTTTGGCGTAGACTTGTGTGTAATAAAGAGGGATTTCGTAAGACGAGGCCCAAAAGAAGTGAGAACAGGAAGCCTCGGGCAATCACGAGAGAAGGGTGTAAAGCAATGATAGTGGTAAAGAGAGAAAAATCAGGAAAATGGATTGTAACGAGATTTATAAAGGACCATAACCATTCACTGGTAGTTACACCTGCAAATGGTCGCCGGACTGTGATTCTATCTCAAACACCAGATGAAAAAGATATGAAAATTCGAGAGTTGACTGCTGAACTACAGCGTGAGCGAAAGAGATCTGCAGCTTATCAAGAACAGCTTGACATGGTTTTGAGGGAGATGGAAGAGCATTCCGATCACCTCTCGAGAAACATTGCCGATATAGTTCAGAGTGTGAAAGAGATTGAATCAAAGAGGATAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

213

Amino Acids

24.73

Weight (kDa)

9.0

Isoelectric Point (pI)

59.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 48 - 135 2e-32 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AarI CACCTGC 1 cut(s) 421
Acc36I ACCTGC 1 cut(s) 421
AccB7I CCANNNNNTGG 1 cut(s) 400
AccI GTMKAC 1 cut(s) 232
AciI CCGC 1 cut(s) 181
AcsI RAATTY 1 cut(s) 471
AfiI CCNNNNNNNGG 3 cut(s) 104, 400, 419
AgsI TTSAA 3 cut(s) 51, 119, 623
AluBI AGCT 2 cut(s) 521, 535
AluI AGCT 2 cut(s) 521, 535
Ama87I CYCGRG 2 cut(s) 297, 580
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 3 cut(s) 65, 131, 518
ApoI RAATTY 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 270, 385
AsuHPI GGTGA 1 cut(s) 566
AvaI CYCGRG 2 cut(s) 297, 580
AvaII GGWCC 1 cut(s) 385
BauI CACGAG 1 cut(s) 307
BbvI GCAGC 3 cut(s) 77, 118, 530
BccI CCATC 3 cut(s) 22, 206, 550
BfaI CTAG 1 cut(s) 640
BfmI CTRYAG 2 cut(s) 494, 516
BfuAI ACCTGC 1 cut(s) 421
BglII AGATCT 1 cut(s) 512
BisI GCNGC 3 cut(s) 66, 132, 519
BlsI GCNGC 3 cut(s) 67, 133, 520
Bme18I GGWCC 1 cut(s) 385
BmeT110I CYCGRG 2 cut(s) 297, 580
BmgT120I GGNCC 2 cut(s) 270, 385
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 2 cut(s) 139, 178
BsaJI CCNNGG 2 cut(s) 135, 296
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 400, 419
Bse1I ACTGG 1 cut(s) 405
Bse3DI GCAATG 3 cut(s) 203, 333, 588
BseDI CCNNGG 2 cut(s) 135, 296
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 3 cut(s) 104, 400, 419
BseMI GCAATG 3 cut(s) 203, 333, 588
BseNI ACTGG 1 cut(s) 405
BseXI GCAGC 3 cut(s) 77, 118, 530
BshFI GGCC 1 cut(s) 271
BsiHKCI CYCGRG 2 cut(s) 297, 580
BsiSI CCGG 1 cut(s) 427
BslI CCNNNNNNNGG 3 cut(s) 104, 400, 419
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 1 cut(s) 271
BsoBI CYCGRG 2 cut(s) 297, 580
Bsp143I GATC 3 cut(s) 200, 512, 571
BspACI CCGC 1 cut(s) 181
BspANI GGCC 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 96
BspMAI CTGCAG 1 cut(s) 520
BspMI ACCTGC 1 cut(s) 421
BspQI GCTCTTC 1 cut(s) 555
BsrDI GCAATG 3 cut(s) 203, 333, 588
BsrI ACTGG 1 cut(s) 405
BssECI CCNNGG 2 cut(s) 135, 296
BssMI GATC 3 cut(s) 200, 512, 571
BssSI CACGAG 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 307
Bst4CI ACNGT 3 cut(s) 99, 165, 433
Bst6I CTCTTC 2 cut(s) 120, 555
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 203, 515, 574
BstMBI GATC 3 cut(s) 200, 512, 571
BstSFI CTRYAG 2 cut(s) 494, 516
BstV1I GCAGC 3 cut(s) 77, 118, 530
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
BsuRI GGCC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 398
BveI ACCTGC 1 cut(s) 421
Cfr13I GGNCC 2 cut(s) 270, 385
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 1 cut(s) 541
CviJI RGCY 7 cut(s) 68, 131, 271, 295, 521, 535, 638
CviKI_1 RGCY 7 cut(s) 68, 131, 271, 295, 521, 535, 638
DpnI GATC 3 cut(s) 202, 514, 573
DpnII GATC 3 cut(s) 200, 512, 571
Eam1104I CTCTTC 2 cut(s) 120, 555
EarI CTCTTC 2 cut(s) 120, 555
Eco130I CCWWGG 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 385
Eco88I CYCGRG 2 cut(s) 297, 580
EcoT14I CCWWGG 1 cut(s) 135
EcoT22I ATGCAT 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 544
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FatI CATG 1 cut(s) 540
FauI CCCGC 1 cut(s) 174
FauNDI CATATG 1 cut(s) 154
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 66, 132, 519
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 66, 132, 519
FspBI CTAG 1 cut(s) 640
GluI GCNGC 3 cut(s) 66, 132, 519
HaeIII GGCC 1 cut(s) 271
HapII CCGG 1 cut(s) 427
Hin1II CATG 1 cut(s) 544
HincII GTYRAC 1 cut(s) 483
HindII GTYRAC 1 cut(s) 483
HinfI GANTC 3 cut(s) 171, 436, 623
HpaII CCGG 1 cut(s) 427
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 2 cut(s) 233, 483
Hpy188I TCNGA 4 cut(s) 88, 198, 571, 606
Hpy188III TCNNGA 6 cut(s) 307, 354, 476, 527, 580, 582
Hpy8I GTNNAC 2 cut(s) 233, 483
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 3 cut(s) 99, 165, 433
HpyCH4V TGCA 4 cut(s) 152, 158, 416, 518
Hsp92II CATG 1 cut(s) 544
Kzo9I GATC 3 cut(s) 200, 512, 571
LguI GCTCTTC 1 cut(s) 555
LpnPI CCDG 6 cut(s) 274, 339, 386, 426, 440, 465
Lsp1109I GCAGC 3 cut(s) 77, 118, 530
LweI GCATC 2 cut(s) 139, 178
MaeI CTAG 1 cut(s) 640
MaeIII GTNAC 2 cut(s) 367, 406
MalI GATC 3 cut(s) 202, 514, 573
MboI GATC 3 cut(s) 200, 512, 571
MboII GAAGA 2 cut(s) 137, 572
MflI RGATCY 1 cut(s) 512
MluCI AATT 1 cut(s) 471
Mph1103I ATGCAT 1 cut(s) 154
MspI CCGG 1 cut(s) 427
Mva1269I GAATGC 1 cut(s) 565
NdeI CATATG 1 cut(s) 154
NdeII GATC 3 cut(s) 200, 512, 571
NlaIII CATG 1 cut(s) 544
NlaIV GGNNCC 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 154
PaeR7I CTCGAG 1 cut(s) 580
PaqCI CACCTGC 1 cut(s) 421
PciSI GCTCTTC 1 cut(s) 555
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 3 cut(s) 171, 436, 623
PflMI CCANNNNNTGG 1 cut(s) 400
PkrI GCNGC 3 cut(s) 67, 133, 520
PsiI TTATAA 1 cut(s) 380
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 2 cut(s) 270, 385
PstI CTGCAG 1 cut(s) 520
PsuI RGATCY 1 cut(s) 512
SapI GCTCTTC 1 cut(s) 555
SatI GCNGC 3 cut(s) 66, 132, 519
Sau3AI GATC 3 cut(s) 200, 512, 571
Sau96I GGNCC 2 cut(s) 270, 385
SetI ASST 6 cut(s) 141, 222, 415, 523, 537, 579
SfaNI GCATC 2 cut(s) 139, 178
SfcI CTRYAG 2 cut(s) 494, 516
Sfr274I CTCGAG 1 cut(s) 580
SinI GGWCC 1 cut(s) 385
SlaI CTCGAG 1 cut(s) 580
SmlI CTYRAG 1 cut(s) 580
SmoI CTYRAG 1 cut(s) 580
Sse9I AATT 1 cut(s) 471
SsiI CCGC 1 cut(s) 181
SspMI CTAG 1 cut(s) 640
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 3 cut(s) 99, 165, 433
TaqI TCGA 2 cut(s) 475, 581
TasI AATT 1 cut(s) 471
TfiI GAWTC 3 cut(s) 171, 436, 623
TscAI CASTG 1 cut(s) 405
TseI GCWGC 3 cut(s) 65, 131, 518
TspDTI ATGAA 4 cut(s) 21, 163, 471, 482
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 1 cut(s) 405
Van91I CCANNNNNTGG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 471
XhoI CTCGAG 1 cut(s) 580
XmiI GTMKAC 1 cut(s) 232
XspI CTAG 1 cut(s) 640
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.