Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005697.1

Orthogroup ID

OG0010302

Physical Location & Seq

Genomic Coordinates Forward (+)

35370 .. 37772

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005697.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ctgccaacaatggatgaacaaccatctacgagcaaagatgaggatatgatagagagttcaaatgggaaagaggcagccacatttgaggggagttcagatatggaaccgtatgtgggtatggagtttgaaacggaagaggctgccaaggtgttctatgatgcatatgcaacacagttgggattcattatgcgggttgatgcctttcggagatcattgcgtgatggtaaggtagtttggcgtagacttgtgtgtaataaagagggatttcgtaagacgaggcccaaaagaagtgagaacaggaagcctcgggcaatcacgagagaagggtgtaaagcaatgatagtggtaaagagagaaaaatcaggaaaatggattgtaacgagatttataaaggaccataaccattcactggtagttacacctgcaaatggtcgccggactgtgattctatctcaaacaccagatgaaaaagatatgaaaattcgagagttgactgctgaactacagcgtgagcgaaagagatctgcagcttatcaagaacagcttgacatggttttgagggagatggaagagcattccgatcacctctcgagaaacattgccgatatagttcagagtgtgaaagagattgaatcaaagaggatagcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

216

Amino Acids

25.04

Weight (kDa)

9.0

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07500
fragaria_vesca	FvH4_2g17601
malus_domestica	MD05G1155500.v1.1 MD05G1156200.v1.1 MD10G1149900.v1.1
prunus_persica	Prupe.8G188300_v2.0.a1
pyrus_communis	pycom05g14880 pycom10g12930
rosa_chinensis	RchiOBHm_Chr6g0282551
rosa_laevigata	RLG00000012885
rosa_multiflora	Rmu_sc0005697.1_g000011 Rmu_sc0022527.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186270
rosa_rugosa	Rorug06G0147500 Rorug06G0147600 Rorug06G0147700
rosa_samantha	Rh6AG260700 Rh6BG263900 Rh6CG263000 Rh6DG254900
rosa_wichuraiana	Rw6G022550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	389
AarI	CACCTGC	1 cut(s)	430
Acc36I	ACCTGC	1 cut(s)	430
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	241
AciI	CCGC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	480
AfiI	CCNNNNNNNGG	3 cut(s)	113, 409, 428
AgsI	TTSAA	3 cut(s)	60, 128, 632
AluBI	AGCT	2 cut(s)	530, 544
AluI	AGCT	2 cut(s)	530, 544
Ama87I	CYCGRG	2 cut(s)	306, 589
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	3 cut(s)	74, 140, 527
ApoI	RAATTY	1 cut(s)	480
AspS9I	GGNCC	2 cut(s)	279, 394
AsuHPI	GGTGA	1 cut(s)	575
AvaI	CYCGRG	2 cut(s)	306, 589
AvaII	GGWCC	1 cut(s)	394
BauI	CACGAG	1 cut(s)	316
BbvI	GCAGC	3 cut(s)	86, 127, 539
BccI	CCATC	3 cut(s)	31, 215, 559
BfaI	CTAG	1 cut(s)	649
BfmI	CTRYAG	2 cut(s)	503, 525
BfuAI	ACCTGC	1 cut(s)	430
BglII	AGATCT	1 cut(s)	521
BisI	GCNGC	3 cut(s)	75, 141, 528
BlsI	GCNGC	3 cut(s)	76, 142, 529
Bme18I	GGWCC	1 cut(s)	394
BmeT110I	CYCGRG	2 cut(s)	306, 589
BmgT120I	GGNCC	2 cut(s)	279, 394
BmiI	GGNNCC	1 cut(s)	105
BmsI	GCATC	2 cut(s)	148, 187
BsaJI	CCNNGG	2 cut(s)	144, 305
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 409, 428
Bse1I	ACTGG	1 cut(s)	414
Bse3DI	GCAATG	3 cut(s)	212, 342, 597
BseDI	CCNNGG	2 cut(s)	144, 305
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	3 cut(s)	113, 409, 428
BseMI	GCAATG	3 cut(s)	212, 342, 597
BseNI	ACTGG	1 cut(s)	414
BseXI	GCAGC	3 cut(s)	86, 127, 539
BshFI	GGCC	1 cut(s)	280
BsiHKCI	CYCGRG	2 cut(s)	306, 589
BsiSI	CCGG	1 cut(s)	436
BslI	CCNNNNNNNGG	3 cut(s)	113, 409, 428
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	280
BsoBI	CYCGRG	2 cut(s)	306, 589
Bsp143I	GATC	3 cut(s)	209, 521, 580
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	529
BspMI	ACCTGC	1 cut(s)	430
BspQI	GCTCTTC	1 cut(s)	564
BsrDI	GCAATG	3 cut(s)	212, 342, 597
BsrI	ACTGG	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	144, 305
BssMI	GATC	3 cut(s)	209, 521, 580
BssSI	CACGAG	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	316
Bst4CI	ACNGT	3 cut(s)	108, 174, 442
Bst6I	CTCTTC	2 cut(s)	129, 564
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	3 cut(s)	212, 524, 583
BstMBI	GATC	3 cut(s)	209, 521, 580
BstSFI	CTRYAG	2 cut(s)	503, 525
BstV1I	GCAGC	3 cut(s)	86, 127, 539
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BsuRI	GGCC	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	407
BveI	ACCTGC	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	279, 394
CspCI	CAANNNNNGTGG	2 cut(s)	324, 359
CviAII	CATG	1 cut(s)	550
CviJI	RGCY	7 cut(s)	77, 140, 280, 304, 530, 544, 647
CviKI_1	RGCY	7 cut(s)	77, 140, 280, 304, 530, 544, 647
DpnI	GATC	3 cut(s)	211, 523, 582
DpnII	GATC	3 cut(s)	209, 521, 580
Eam1104I	CTCTTC	2 cut(s)	129, 564
EarI	CTCTTC	2 cut(s)	129, 564
Eco130I	CCWWGG	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	394
Eco88I	CYCGRG	2 cut(s)	306, 589
EcoT14I	CCWWGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	553
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FatI	CATG	1 cut(s)	549
FauI	CCCGC	1 cut(s)	183
FauNDI	CATATG	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	75, 141, 528
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	3 cut(s)	75, 141, 528
FspBI	CTAG	1 cut(s)	649
GluI	GCNGC	3 cut(s)	75, 141, 528
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	1 cut(s)	436
Hin1II	CATG	1 cut(s)	553
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	3 cut(s)	180, 445, 632
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	2 cut(s)	242, 492
Hpy188I	TCNGA	4 cut(s)	97, 207, 580, 615
Hpy188III	TCNNGA	6 cut(s)	316, 363, 485, 536, 589, 591
Hpy8I	GTNNAC	2 cut(s)	242, 492
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	3 cut(s)	108, 174, 442
HpyCH4V	TGCA	4 cut(s)	161, 167, 425, 527
Hsp92II	CATG	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	209, 521, 580
LguI	GCTCTTC	1 cut(s)	564
LpnPI	CCDG	6 cut(s)	283, 348, 395, 435, 449, 474
Lsp1109I	GCAGC	3 cut(s)	86, 127, 539
LweI	GCATC	2 cut(s)	148, 187
MaeI	CTAG	1 cut(s)	649
MaeIII	GTNAC	2 cut(s)	376, 415
MalI	GATC	3 cut(s)	211, 523, 582
MboI	GATC	3 cut(s)	209, 521, 580
MboII	GAAGA	2 cut(s)	146, 581
MflI	RGATCY	1 cut(s)	521
MluCI	AATT	1 cut(s)	480
Mph1103I	ATGCAT	1 cut(s)	163
MspI	CCGG	1 cut(s)	436
Mva1269I	GAATGC	1 cut(s)	574
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	3 cut(s)	209, 521, 580
NlaIII	CATG	1 cut(s)	553
NlaIV	GGNNCC	1 cut(s)	105
NsiI	ATGCAT	1 cut(s)	163
PaeR7I	CTCGAG	1 cut(s)	589
PaqCI	CACCTGC	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	564
PctI	GAATGC	1 cut(s)	574
PfeI	GAWTC	3 cut(s)	180, 445, 632
PflMI	CCANNNNNTGG	1 cut(s)	409
PkrI	GCNGC	3 cut(s)	76, 142, 529
PsiI	TTATAA	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	279, 394
PstI	CTGCAG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	564
SatI	GCNGC	3 cut(s)	75, 141, 528
Sau3AI	GATC	3 cut(s)	209, 521, 580
Sau96I	GGNCC	2 cut(s)	279, 394
SetI	ASST	6 cut(s)	150, 231, 424, 532, 546, 588
SfaNI	GCATC	2 cut(s)	148, 187
SfcI	CTRYAG	2 cut(s)	503, 525
Sfr274I	CTCGAG	1 cut(s)	589
SinI	GGWCC	1 cut(s)	394
SlaI	CTCGAG	1 cut(s)	589
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	649
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	3 cut(s)	108, 174, 442
TaqI	TCGA	2 cut(s)	484, 590
TasI	AATT	1 cut(s)	480
TfiI	GAWTC	3 cut(s)	180, 445, 632
TscAI	CASTG	1 cut(s)	414
TseI	GCWGC	3 cut(s)	74, 140, 527
TspDTI	ATGAA	4 cut(s)	30, 172, 480, 491
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	414
Van91I	CCANNNNNTGG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	1 cut(s)	480
XhoI	CTCGAG	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	241
XspI	CTAG	1 cut(s)	649
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.