Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010302

Physical Location & Seq

Genomic Coordinates Reverse (-)

18463141 .. 18466063

Gene Structure 2923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G188300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGATGAACAATCTTCTATGAGCAAGGATGAGGATGTGATAGAGAGTTCCAATGGAAAAGATGCAGTCACATCTGAGGGGAATTCGGATATGGAACCATATGTGGGTATGGAGTTCGAATCTGAAGAGGCTGCCAAAGTGTTCTATGACGCATATGCAACACACTTGGGGTTCATCATGCGTGTTGATGCGTTCCGAAGATCCATGCGTGATGGTAAGGTAGTTTGGCGTAGGCTTGTGTGTAATAAAGAGGGATTTCGTAAGACAAGACCCAAAAGAAGTGAGAATAGGAAGCCTCGCGCAATCACCAGAGAAGGGTGTAAAGCAATGATAGTGGTAAAGAAAGAAAAATCGGGAAAATGGATAGTAACAAGATTTGTAAAGGAGCATAACCATCCACTGGTGGTTACACCTGCAAATGGTCGTCGCACTGTGCTTCTATCTCAAACACCAGATGAAAAAGATGTGAAAATTCGGGAGTTGACGGCTGAGTTACAACGTGAGCGGAAGAGATCTGCAGCCTATCAAGAACAACTTGATATGGTTTTGAGAGAGATGGAAGAACATTCAAATCACCTCTCAAGAAACATTGACGGTATAGTCCAAAGCGTGAAAGAAATTGAATCGAAGAGGGTGGCACCCTCAAACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

218

Amino Acids

25.02

Weight (kDa)

9.14

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07500
fragaria_vesca	FvH4_2g17601
malus_domestica	MD05G1155500.v1.1 MD05G1156200.v1.1 MD10G1149900.v1.1
prunus_persica	Prupe.8G188300_v2.0.a1
pyrus_communis	pycom05g14880 pycom10g12930
rosa_chinensis	RchiOBHm_Chr6g0282551
rosa_laevigata	RLG00000012885
rosa_multiflora	Rmu_sc0005697.1_g000011 Rmu_sc0022527.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186270
rosa_rugosa	Rorug06G0147500 Rorug06G0147600 Rorug06G0147700
rosa_samantha	Rh6AG260700 Rh6BG263900 Rh6CG263000 Rh6DG254900
rosa_wichuraiana	Rw6G022550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	421
AasI	GACNNNNNNGTC	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	637
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccBSI	CCGCTC	1 cut(s)	505
AccII	CGCG	1 cut(s)	300
AciI	CCGC	1 cut(s)	505
AclWI	GGATC	1 cut(s)	195
AcsI	RAATTY	2 cut(s)	82, 471
AcuI	CTGAAG	1 cut(s)	144
AfiI	CCNNNNNNNGG	4 cut(s)	104, 315, 400, 419
AgsI	TTSAA	2 cut(s)	570, 623
AlwI	GGATC	1 cut(s)	195
ApeKI	GCWGC	2 cut(s)	131, 518
ApoI	RAATTY	2 cut(s)	82, 471
AspLEI	GCGC	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	298, 566
AsuII	TTCGAA	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	637
BbvI	GCAGC	2 cut(s)	118, 530
BccI	CCATC	3 cut(s)	206, 402, 550
BceAI	ACGGC	1 cut(s)	501
BfmI	CTRYAG	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	421
BglII	AGATCT	1 cut(s)	512
BisI	GCNGC	2 cut(s)	132, 519
BlsI	GCNGC	2 cut(s)	133, 520
BmiI	GGNNCC	2 cut(s)	96, 639
BmsI	GCATC	2 cut(s)	52, 178
Bpu14I	TTCGAA	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 315, 400, 419
Bse1I	ACTGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	333
BseGI	GGATG	4 cut(s)	10, 34, 40, 394
BseLI	CCNNNNNNNGG	4 cut(s)	104, 315, 400, 419
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	66, 480
BseNI	ACTGG	1 cut(s)	405
BseXI	GCAGC	2 cut(s)	118, 530
Bsh1236I	CGCG	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	637
BslI	CCNNNNNNNGG	4 cut(s)	104, 315, 400, 419
Bsp119I	TTCGAA	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	200, 512
BspACI	CCGC	1 cut(s)	505
BspCNI	CTCAG	2 cut(s)	67, 481
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	2 cut(s)	96, 639
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	421
BspPI	GGATC	1 cut(s)	195
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	637
BsrBI	CCGCTC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	405
BssMI	GATC	2 cut(s)	200, 512
Bst4CI	ACNGT	3 cut(s)	433, 596, 650
Bst6I	CTCTTC	3 cut(s)	120, 503, 623
BstBI	TTCGAA	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	75, 489
BstF5I	GGATG	4 cut(s)	10, 34, 40, 394
BstFNI	CGCG	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	2 cut(s)	203, 515
BstMBI	GATC	2 cut(s)	200, 512
BstSFI	CTRYAG	1 cut(s)	516
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	118, 530
BstX2I	RGATCY	2 cut(s)	200, 512
BstYI	RGATCY	2 cut(s)	200, 512
BtsCI	GGATG	4 cut(s)	10, 34, 40, 394
BtsIMutI	CAGTG	2 cut(s)	398, 429
BveI	ACCTGC	1 cut(s)	421
CfoI	GCGC	1 cut(s)	302
CseI	GACGC	1 cut(s)	158
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	2 cut(s)	178, 205
CviJI	RGCY	5 cut(s)	131, 235, 295, 488, 521
CviKI_1	RGCY	5 cut(s)	131, 235, 295, 488, 521
DdeI	CTNAG	2 cut(s)	75, 489
DpnI	GATC	2 cut(s)	202, 514
DpnII	GATC	2 cut(s)	200, 512
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
Eam1104I	CTCTTC	3 cut(s)	120, 503, 623
EarI	CTCTTC	3 cut(s)	120, 503, 623
Eco57I	CTGAAG	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	82
FaeI	CATG	2 cut(s)	181, 208
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FatI	CATG	2 cut(s)	177, 204
FauNDI	CATATG	2 cut(s)	100, 154
Fnu4HI	GCNGC	2 cut(s)	132, 519
FokI	GGATG	4 cut(s)	17, 41, 47, 381
Fsp4HI	GCNGC	2 cut(s)	132, 519
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	2 cut(s)	132, 519
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	2 cut(s)	181, 208
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HinfI	GANTC	2 cut(s)	119, 623
HphI	GGTGA	2 cut(s)	298, 566
Hpy166II	GTNNAC	1 cut(s)	483
Hpy188I	TCNGA	4 cut(s)	76, 88, 124, 197
Hpy188III	TCNNGA	4 cut(s)	354, 476, 527, 582
Hpy8I	GTNNAC	1 cut(s)	483
Hpy99I	CGWCG	1 cut(s)	429
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	3 cut(s)	433, 596, 650
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	4 cut(s)	65, 158, 416, 518
HpyF3I	CTNAG	2 cut(s)	75, 489
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	2 cut(s)	181, 208
HspAI	GCGC	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	200, 512
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	4 cut(s)	322, 386, 426, 465
Lsp1109I	GCAGC	2 cut(s)	118, 530
LweI	GCATC	2 cut(s)	52, 178
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	4 cut(s)	67, 367, 406, 492
MalI	GATC	2 cut(s)	202, 514
MbiI	CCGCTC	1 cut(s)	505
MboI	GATC	2 cut(s)	200, 512
MboII	GAAGA	6 cut(s)	6, 137, 210, 520, 572, 640
MflI	RGATCY	2 cut(s)	200, 512
MluCI	AATT	3 cut(s)	82, 471, 618
MnlI	CCTC	8 cut(s)	25, 70, 121, 244, 306, 587, 624, 652
MseI	TTAA	1 cut(s)	652
MvnI	CGCG	1 cut(s)	300
NdeI	CATATG	2 cut(s)	100, 154
NdeII	GATC	2 cut(s)	200, 512
NlaIII	CATG	2 cut(s)	181, 208
NlaIV	GGNNCC	2 cut(s)	96, 639
NmuCI	GTSAC	1 cut(s)	67
NspV	TTCGAA	1 cut(s)	117
PaqCI	CACCTGC	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	119, 623
PflMI	CCANNNNNTGG	1 cut(s)	400
PkrI	GCNGC	2 cut(s)	133, 520
PspN4I	GGNNCC	2 cut(s)	96, 639
PstI	CTGCAG	1 cut(s)	520
PsuI	RGATCY	2 cut(s)	200, 512
SaqAI	TTAA	1 cut(s)	652
SatI	GCNGC	2 cut(s)	132, 519
Sau3AI	GATC	2 cut(s)	200, 512
SetI	ASST	4 cut(s)	222, 415, 502, 579
SfaNI	GCATC	2 cut(s)	52, 178
SfcI	CTRYAG	1 cut(s)	516
SfuI	TTCGAA	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
Sse9I	AATT	3 cut(s)	82, 471, 618
SsiI	CCGC	1 cut(s)	505
TaaI	ACNGT	3 cut(s)	433, 596, 650
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	2 cut(s)	117, 626
TasI	AATT	3 cut(s)	82, 471, 618
TfiI	GAWTC	2 cut(s)	119, 623
Tru1I	TTAA	1 cut(s)	652
Tru9I	TTAA	1 cut(s)	652
TscAI	CASTG	2 cut(s)	405, 436
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	131, 518
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	21, 163, 471
TspRI	CASTG	2 cut(s)	405, 436
Van91I	CCANNNNNTGG	1 cut(s)	400
XapI	RAATTY	2 cut(s)	82, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.