pycom05g14880

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010302
Physical Location & Seq
Reverse (-)
18488723 .. 18491353
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g14880.1

Sequence Viewer

Length: 882 bp
ATGATAGCACAGAAGGCAGATTTCTTCGCCGCAGTGGATCATTCATCTGCCAACACCCTGGAGTTCGAGCTCAAACGCTTCAACCGCCCGCCACCTCCCCAAAACCAGAAGAACAAACAAGGAACGAACTTTCTGCTTCCTCTCTATTGCAGAAGCCAAGCAAACTGTTGGGTCGCGATCTCTTTGTCACAGCAAAACCTTAGATGGAGTCTTGTCACAATGCTTATTTGGGCAGTGGATGATGAAGAACCTTCTATGAGCAAGGATGAGGACGTGTTAGAGAGTTCCAATGGGAAAGAGGCAGTCACATATGAGGGGAACTCAGATACAGAACCATTTGTGGGTATGGAGTTTGAATCTGAAGAGGCTGCCAAAGTGTTCTATGATGCATATGCAACACAGGTGGGCTTCATTATGCGAGTCGATGCCTTCCGGAGATCAATGCGTGATGGTAAGGTAGTTTGGCGGAGGCTTGTGTGTAACAAAGAGGGATTTCGCAAGACCCGAGCCAAAAGAACTGAGAACAGGAAGCCTCGAGCAATCACCAGAGAAGGGTGCAAAGCGATGATTGTGGTAAAGAAAGACAAATCAGGAAAATGGATCGTAACACGATTTATAAAGGAGCATAACCATCCACTAGTAGGTACACCTGCAAATGGTCGCCGCAGTATGCTTCTATCTCAAACACCAGACGAAAAAGATCTGAAAATTCGGGAGTTGACTGCTGAGTTGCAACGTGAGCGAAAGAGGTCTGCCACCTATCAAGAACAGCTTGATATGGTTTTGAGGGAGATGGAAGAACATTCCAATCACTTGTCGAGAAACATTGACGGTATAGTCCAGAGCGTGAAAGAAATTGAATCAAAGAGGGTAGCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

294

Amino Acids

33.83

Weight (kDa)

9.17

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 127 - 214 9.3e-33 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 617
AarI CACCTGC 1 cut(s) 658
AasI GACNNNNNNGTC 1 cut(s) 836
Acc36I ACCTGC 1 cut(s) 658
AccII CGCG 1 cut(s) 176
AccIII TCCGGA 1 cut(s) 432
AciI CCGC 5 cut(s) 30, 85, 89, 466, 664
AclWI GGATC 2 cut(s) 45, 608
AcsI RAATTY 1 cut(s) 708
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 1 cut(s) 646
AfiI CCNNNNNNNGG 4 cut(s) 341, 552, 641, 656
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 3 cut(s) 82, 356, 860
AhlI ACTAGT 1 cut(s) 637
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 2 cut(s) 70, 772
AluI AGCT 2 cut(s) 70, 772
Alw21I GWGCWC 1 cut(s) 72
AlwI GGATC 2 cut(s) 45, 608
Ama87I CYCGRG 2 cut(s) 504, 534
Aor13HI TCCGGA 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 708
AsuHPI GGTGA 1 cut(s) 535
AvaI CYCGRG 2 cut(s) 504, 534
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 355
BccI CCATC 4 cut(s) 198, 443, 639, 787
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 59
BcuI ACTAGT 1 cut(s) 637
BfaI CTAG 1 cut(s) 638
BfuAI ACCTGC 1 cut(s) 658
BglII AGATCT 1 cut(s) 700
BisI GCNGC 3 cut(s) 30, 369, 664
BlsI GCNGC 3 cut(s) 31, 370, 665
Bme1390I CCNGG 1 cut(s) 59
BmeT110I CYCGRG 2 cut(s) 504, 534
BmgBI CACGTC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 2 cut(s) 376, 415
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpmI CTGGAG 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 432
Bsc4I CCNNNNNNNGG 4 cut(s) 341, 552, 641, 656
BseAI TCCGGA 1 cut(s) 432
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 3 cut(s) 244, 271, 631
BseLI CCNNNNNNNGG 4 cut(s) 341, 552, 641, 656
BseMII CTCAG 3 cut(s) 336, 510, 717
BseXI GCAGC 1 cut(s) 355
Bsh1236I CGCG 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 2 cut(s) 504, 534
BsiSI CCGG 1 cut(s) 433
BslI CCNNNNNNNGG 4 cut(s) 341, 552, 641, 656
BsoBI CYCGRG 2 cut(s) 504, 534
Bsp1286I GDGCHC 1 cut(s) 72
Bsp13I TCCGGA 1 cut(s) 432
Bsp143I GATC 5 cut(s) 37, 177, 437, 600, 700
Bsp68I TCGCGA 1 cut(s) 176
BspACI CCGC 5 cut(s) 30, 85, 89, 466, 664
BspCNI CTCAG 3 cut(s) 335, 511, 718
BspEI TCCGGA 1 cut(s) 432
BspFNI CGCG 1 cut(s) 176
BspMI ACCTGC 1 cut(s) 658
BspPI GGATC 2 cut(s) 45, 608
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 5 cut(s) 37, 177, 437, 600, 700
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 167, 833
Bst6I CTCTTC 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 4 cut(s) 200, 322, 519, 726
BstF5I GGATG 3 cut(s) 244, 271, 631
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 5 cut(s) 40, 180, 440, 603, 703
BstMBI GATC 5 cut(s) 37, 177, 437, 600, 700
BstMWI GCNNNNNNNGC 3 cut(s) 14, 84, 739
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 57
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 700
BstXI CCANNNNNNTGG 1 cut(s) 58
BstYI RGATCY 1 cut(s) 700
BtgZI GCGATG 1 cut(s) 578
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 3 cut(s) 244, 271, 631
BtsI GCAGTG 2 cut(s) 39, 240
BtsIMutI CAGTG 2 cut(s) 39, 240
BtuMI TCGCGA 1 cut(s) 176
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 645
CspCI CAANNNNNGTGG 2 cut(s) 384, 419
CviJI RGCY 8 cut(s) 70, 156, 368, 408, 472, 509, 532, 772
CviKI_1 RGCY 8 cut(s) 70, 156, 368, 408, 472, 509, 532, 772
CviQI GTAC 1 cut(s) 645
DdeI CTNAG 4 cut(s) 200, 322, 519, 726
DpnI GATC 5 cut(s) 39, 179, 439, 602, 702
DpnII GATC 5 cut(s) 37, 177, 437, 600, 700
DrdI GACNNNNNNGTC 1 cut(s) 836
DseDI GACNNNNNNGTC 1 cut(s) 836
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
EciI GGCGGA 1 cut(s) 481
Ecl136II GAGCTC 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 381
Eco88I CYCGRG 2 cut(s) 504, 534
EcoICRI GAGCTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 72
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FauI CCCGC 1 cut(s) 96
FauNDI CATATG 2 cut(s) 310, 391
Fnu4HI GCNGC 3 cut(s) 30, 369, 664
FokI GGATG 3 cut(s) 251, 278, 618
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 3 cut(s) 30, 369, 664
FspBI CTAG 1 cut(s) 638
GluI GCNGC 3 cut(s) 30, 369, 664
GsuI CTGGAG 1 cut(s) 80
HapII CCGG 1 cut(s) 433
HincII GTYRAC 1 cut(s) 720
HindII GTYRAC 1 cut(s) 720
HinfI GANTC 4 cut(s) 208, 356, 420, 860
HpaII CCGG 1 cut(s) 433
HphI GGTGA 1 cut(s) 535
Hpy166II GTNNAC 2 cut(s) 647, 720
Hpy188I TCNGA 3 cut(s) 325, 361, 705
Hpy188III TCNNGA 7 cut(s) 175, 433, 591, 713, 764, 819, 841
Hpy8I GTNNAC 2 cut(s) 647, 720
HpyAV CCTTC 4 cut(s) 7, 261, 439, 545
HpyCH4III ACNGT 2 cut(s) 167, 833
HpyCH4IV ACGT 2 cut(s) 273, 736
HpyCH4V TGCA 6 cut(s) 150, 389, 395, 558, 653, 733
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 84, 739
HpyF3I CTNAG 4 cut(s) 200, 322, 519, 726
HpySE526I ACGT 2 cut(s) 273, 736
Kpn2I TCCGGA 1 cut(s) 432
Kzo9I GATC 5 cut(s) 37, 177, 437, 600, 700
LmnI GCTCC 1 cut(s) 622
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 2 cut(s) 376, 415
MaeI CTAG 1 cut(s) 638
MaeII ACGT 2 cut(s) 273, 736
MaeIII GTNAC 5 cut(s) 186, 214, 304, 479, 604
MalI GATC 5 cut(s) 39, 179, 439, 602, 702
MboI GATC 5 cut(s) 37, 177, 437, 600, 700
MboII GAAGA 5 cut(s) 16, 121, 257, 374, 809
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 2 cut(s) 708, 855
MlyI GAGTC 2 cut(s) 217, 429
Mph1103I ATGCAT 1 cut(s) 391
MroI TCCGGA 1 cut(s) 432
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 3 cut(s) 14, 84, 739
NdeI CATATG 2 cut(s) 310, 391
NdeII GATC 5 cut(s) 37, 177, 437, 600, 700
NmuCI GTSAC 3 cut(s) 186, 214, 304
NruI TCGCGA 1 cut(s) 176
NsiI ATGCAT 1 cut(s) 391
PaeR7I CTCGAG 1 cut(s) 534
PaqCI CACCTGC 1 cut(s) 658
PcsI WCGNNNNNNNCGW 1 cut(s) 502
PfeI GAWTC 2 cut(s) 356, 860
PkrI GCNGC 3 cut(s) 31, 370, 665
PleI GAGTC 2 cut(s) 216, 428
PpsI GAGTC 2 cut(s) 216, 428
PsiI TTATAA 1 cut(s) 617
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspXI VCTCGAGB 1 cut(s) 534
PsuI RGATCY 1 cut(s) 700
RruI TCGCGA 1 cut(s) 176
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
SacI GAGCTC 1 cut(s) 72
SatI GCNGC 3 cut(s) 30, 369, 664
Sau3AI GATC 5 cut(s) 37, 177, 437, 600, 700
SchI GAGTC 2 cut(s) 217, 429
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 2 cut(s) 376, 415
Sfr274I CTCGAG 1 cut(s) 534
SlaI CTCGAG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
SpeI ACTAGT 1 cut(s) 637
Sse9I AATT 2 cut(s) 708, 855
SsiI CCGC 5 cut(s) 30, 85, 89, 466, 664
SspMI CTAG 1 cut(s) 638
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 167, 833
TaiI ACGT 2 cut(s) 276, 739
TaqI TCGA 4 cut(s) 66, 423, 535, 818
TasI AATT 2 cut(s) 708, 855
TauI GCSGC 2 cut(s) 32, 666
TfiI GAWTC 2 cut(s) 356, 860
TscAI CASTG 2 cut(s) 39, 240
TseFI GTSAC 3 cut(s) 186, 214, 304
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 3 cut(s) 186, 214, 304
TspDTI ATGAA 3 cut(s) 33, 258, 400
TspRI CASTG 2 cut(s) 39, 240
XapI RAATTY 1 cut(s) 708
XhoI CTCGAG 1 cut(s) 534
XspI CTAG 1 cut(s) 638
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.