RchiOBHm_Chr6g0282551

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010302
Physical Location & Seq
Reverse (-)
45798144 .. 45801402
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25333

Sequence Viewer

Length: 606 bp
ATGATAGAGAGTTCAAATGGGAAAGAGGCAGCCACATTTGAGGGGAGTTCAGATATGGAACCGTATGTGGGTATGGAGTTTGAAACGGAAGAGGCTGCCAAGGTGTTCTATGATGCATATGCAACACAGTTGGGATTCATTATGCGGGTTGATGCCTTTCGGAGATCATTGCGTGATGGTAAGGTAGTTTGGCGTAGACTTGTGTGCAATAAAGAAGGATTTCGTAAGACGAGGCCCAAAAGAAGTGAGAACAGGAAGCCTCGGGCAATCACAAGAGAAGGGTGTAAAGCAATGATAGTGGTAAAGAGAGAAAAATCAGGAAAATGGATTGTAACGAGATTTATAAAGGACCATAACCATTCACTGGTAGTTACACCTGCAAATGGTCGCCGGACTGTGATTCTATCTCAAACACCAGATGAAAAAGATATGAAAATTCGAGAGTTGACTGCTGAGCTACAGCGTGAGCGAAAGAGATCTGCAGCTTATCAAGAACAGCTTGACATGGTTTTGAGGGAGATGGAAGAGCATTCCAATCACCTCTCGAGAAACATTGCTGATATAGTTCAGAGTGTGAAAGAGATTGAATCAAAGAGGATAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

201

Amino Acids

23.36

Weight (kDa)

9.63

Isoelectric Point (pI)

58.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 36 - 123 1.8e-32 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 1 cut(s) 385
AccB7I CCANNNNNTGG 1 cut(s) 364
AccI GTMKAC 1 cut(s) 196
AciI CCGC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 435
AfiI CCNNNNNNNGG 3 cut(s) 68, 364, 383
AgsI TTSAA 3 cut(s) 15, 83, 587
AluBI AGCT 3 cut(s) 457, 485, 499
AluI AGCT 3 cut(s) 457, 485, 499
Ama87I CYCGRG 2 cut(s) 261, 544
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 3 cut(s) 29, 95, 482
ApoI RAATTY 1 cut(s) 435
Asp700I GAANNNNTTC 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 234, 349
AsuHPI GGTGA 1 cut(s) 530
AvaI CYCGRG 2 cut(s) 261, 544
AvaII GGWCC 1 cut(s) 349
BbvI GCAGC 3 cut(s) 41, 82, 494
BccI CCATC 2 cut(s) 170, 514
BfaI CTAG 1 cut(s) 604
BfmI CTRYAG 2 cut(s) 458, 480
BfuAI ACCTGC 1 cut(s) 385
BglII AGATCT 1 cut(s) 476
BisI GCNGC 3 cut(s) 30, 96, 483
BlpI GCTNAGC 1 cut(s) 453
BlsI GCNGC 3 cut(s) 31, 97, 484
Bme18I GGWCC 1 cut(s) 349
BmeT110I CYCGRG 2 cut(s) 261, 544
BmgT120I GGNCC 2 cut(s) 234, 349
BmiI GGNNCC 1 cut(s) 60
BmsI GCATC 2 cut(s) 103, 142
Bpu1102I GCTNAGC 1 cut(s) 453
BsaJI CCNNGG 2 cut(s) 99, 260
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 364, 383
Bse1I ACTGG 1 cut(s) 369
Bse3DI GCAATG 3 cut(s) 167, 297, 552
BseDI CCNNGG 2 cut(s) 99, 260
BseLI CCNNNNNNNGG 3 cut(s) 68, 364, 383
BseMI GCAATG 3 cut(s) 167, 297, 552
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 369
BseXI GCAGC 3 cut(s) 41, 82, 494
BshFI GGCC 1 cut(s) 235
BsiHKCI CYCGRG 2 cut(s) 261, 544
BsiSI CCGG 1 cut(s) 391
BslI CCNNNNNNNGG 3 cut(s) 68, 364, 383
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 1 cut(s) 235
BsoBI CYCGRG 2 cut(s) 261, 544
Bsp143I GATC 2 cut(s) 164, 476
Bsp1720I GCTNAGC 1 cut(s) 453
BspACI CCGC 1 cut(s) 145
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 484
BspMI ACCTGC 1 cut(s) 385
BspQI GCTCTTC 1 cut(s) 519
BsrDI GCAATG 3 cut(s) 167, 297, 552
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 99, 260
BssMI GATC 2 cut(s) 164, 476
BssT1I CCWWGG 1 cut(s) 99
Bst4CI ACNGT 3 cut(s) 63, 129, 397
Bst6I CTCTTC 2 cut(s) 84, 519
BstDEI CTNAG 1 cut(s) 453
BstKTI GATC 2 cut(s) 167, 479
BstMBI GATC 2 cut(s) 164, 476
BstSFI CTRYAG 2 cut(s) 458, 480
BstV1I GCAGC 3 cut(s) 41, 82, 494
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 362
BveI ACCTGC 1 cut(s) 385
Cfr13I GGNCC 2 cut(s) 234, 349
CspCI CAANNNNNGTGG 2 cut(s) 279, 314
CviAII CATG 1 cut(s) 505
CviJI RGCY 8 cut(s) 32, 95, 235, 259, 457, 485, 499, 602
CviKI_1 RGCY 8 cut(s) 32, 95, 235, 259, 457, 485, 499, 602
DdeI CTNAG 1 cut(s) 453
DpnI GATC 2 cut(s) 166, 478
DpnII GATC 2 cut(s) 164, 476
Eam1104I CTCTTC 2 cut(s) 84, 519
EarI CTCTTC 2 cut(s) 84, 519
Eco130I CCWWGG 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 349
Eco88I CYCGRG 2 cut(s) 261, 544
EcoT14I CCWWGG 1 cut(s) 99
EcoT22I ATGCAT 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 1 cut(s) 508
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FatI CATG 1 cut(s) 504
FauI CCCGC 1 cut(s) 138
FauNDI CATATG 1 cut(s) 118
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 30, 96, 483
Fsp4HI GCNGC 3 cut(s) 30, 96, 483
FspBI CTAG 1 cut(s) 604
GluI GCNGC 3 cut(s) 30, 96, 483
HaeIII GGCC 1 cut(s) 235
HapII CCGG 1 cut(s) 391
Hin1II CATG 1 cut(s) 508
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HinfI GANTC 3 cut(s) 135, 400, 587
HpaII CCGG 1 cut(s) 391
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 2 cut(s) 197, 447
Hpy188I TCNGA 3 cut(s) 52, 162, 570
Hpy188III TCNNGA 5 cut(s) 318, 440, 491, 544, 546
Hpy8I GTNNAC 2 cut(s) 197, 447
HpyAV CCTTC 2 cut(s) 209, 272
HpyCH4III ACNGT 3 cut(s) 63, 129, 397
HpyCH4V TGCA 5 cut(s) 116, 122, 207, 380, 482
HpyF3I CTNAG 1 cut(s) 453
Hsp92II CATG 1 cut(s) 508
Kzo9I GATC 2 cut(s) 164, 476
LguI GCTCTTC 1 cut(s) 519
LpnPI CCDG 6 cut(s) 238, 303, 350, 390, 404, 429
Lsp1109I GCAGC 3 cut(s) 41, 82, 494
LweI GCATC 2 cut(s) 103, 142
MaeI CTAG 1 cut(s) 604
MaeIII GTNAC 2 cut(s) 331, 370
MalI GATC 2 cut(s) 166, 478
MboI GATC 2 cut(s) 164, 476
MboII GAAGA 2 cut(s) 101, 536
MflI RGATCY 1 cut(s) 476
MluCI AATT 1 cut(s) 435
MnlI CCTC 8 cut(s) 19, 34, 85, 225, 270, 507, 551, 588
Mph1103I ATGCAT 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 219
MspI CCGG 1 cut(s) 391
Mva1269I GAATGC 1 cut(s) 529
NdeI CATATG 1 cut(s) 118
NdeII GATC 2 cut(s) 164, 476
NlaIII CATG 1 cut(s) 508
NlaIV GGNNCC 1 cut(s) 60
NsiI ATGCAT 1 cut(s) 118
PaeR7I CTCGAG 1 cut(s) 544
PaqCI CACCTGC 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 519
PctI GAATGC 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 3 cut(s) 135, 400, 587
PflMI CCANNNNNTGG 1 cut(s) 364
PkrI GCNGC 3 cut(s) 31, 97, 484
PsiI TTATAA 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 234, 349
PstI CTGCAG 1 cut(s) 484
PsuI RGATCY 1 cut(s) 476
SapI GCTCTTC 1 cut(s) 519
SatI GCNGC 3 cut(s) 30, 96, 483
Sau3AI GATC 2 cut(s) 164, 476
Sau96I GGNCC 2 cut(s) 234, 349
SetI ASST 7 cut(s) 105, 186, 379, 459, 487, 501, 543
SfaNI GCATC 2 cut(s) 103, 142
SfcI CTRYAG 2 cut(s) 458, 480
Sfr274I CTCGAG 1 cut(s) 544
SinI GGWCC 1 cut(s) 349
SlaI CTCGAG 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
Sse9I AATT 1 cut(s) 435
SsiI CCGC 1 cut(s) 145
SspMI CTAG 1 cut(s) 604
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 3 cut(s) 63, 129, 397
TaqI TCGA 2 cut(s) 439, 545
TasI AATT 1 cut(s) 435
TfiI GAWTC 3 cut(s) 135, 400, 587
TscAI CASTG 1 cut(s) 369
TseI GCWGC 3 cut(s) 29, 95, 482
TspDTI ATGAA 3 cut(s) 127, 435, 446
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 1 cut(s) 369
Van91I CCANNNNNTGG 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 349
XapI RAATTY 1 cut(s) 435
XhoI CTCGAG 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 1 cut(s) 604
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.