Rh6AG260700

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010302
Physical Location & Seq
Reverse (-)
45254821 .. 45257713
2893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG260700.1

Sequence Viewer

Length: 495 bp
ATGGATGAACAACCATCTACGAGCAAAGATGAGGATATGATAGAGAGTTCAAATGGGAAAGAGGCAGCCACATTTGAGGGGAGTTCAGATATGGAACCGTATGTGGGTATGGAGTTTGAAACGGAAGAGGCTGCCAAGGTGTTCTATGATGCATATGCAACACAGTTGGGATTCATTATGCGGGTTGATGCCTTTCGGAGATCATTGCGTGATGGTAAGGTAGTTTGGCGTAGACTTGTGTGTAATAAAGAGGGATTTCGTAAGACGAGGCCCAAAAGAAGTGAGAACAGGAAGCCTCGGGCAATCACGAGAGAAGGGTGTAAAGCAATGATAGTGGTAAAGAGAGAAAAATCAGGAAAATGGATTGTAACGAGATTTATAAAGGACCATAACCATTCACTGGTAGTTACACCTGCAAATGGTCGCCGGACTGTGATTCTATCTCAAACACCAGTGAGTCCTCATTGCTCAATAAGCTTTCTCATCCTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

164

Amino Acids

18.76

Weight (kDa)

9.48

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 48 - 135 1.1e-32 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AarI CACCTGC 1 cut(s) 421
Acc36I ACCTGC 1 cut(s) 421
AccB7I CCANNNNNTGG 1 cut(s) 400
AccI GTMKAC 1 cut(s) 232
AciI CCGC 1 cut(s) 181
AfiI CCNNNNNNNGG 3 cut(s) 104, 400, 419
AgsI TTSAA 2 cut(s) 51, 119
AluBI AGCT 1 cut(s) 477
AluI AGCT 1 cut(s) 477
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 2 cut(s) 65, 131
AspS9I GGNCC 2 cut(s) 270, 385
AvaI CYCGRG 1 cut(s) 297
AvaII GGWCC 1 cut(s) 385
BauI CACGAG 1 cut(s) 307
BbvI GCAGC 2 cut(s) 77, 118
BccI CCATC 2 cut(s) 22, 206
BfuAI ACCTGC 1 cut(s) 421
BisI GCNGC 2 cut(s) 66, 132
BlsI GCNGC 2 cut(s) 67, 133
Bme18I GGWCC 1 cut(s) 385
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 2 cut(s) 270, 385
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 2 cut(s) 139, 178
BsaJI CCNNGG 2 cut(s) 135, 296
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 400, 419
Bse1I ACTGG 2 cut(s) 405, 452
Bse3DI GCAATG 3 cut(s) 203, 333, 463
BseDI CCNNGG 2 cut(s) 135, 296
BseGI GGATG 2 cut(s) 10, 483
BseLI CCNNNNNNNGG 3 cut(s) 104, 400, 419
BseMI GCAATG 3 cut(s) 203, 333, 463
BseNI ACTGG 2 cut(s) 405, 452
BseXI GCAGC 2 cut(s) 77, 118
BshFI GGCC 1 cut(s) 271
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 1 cut(s) 427
BslI CCNNNNNNNGG 3 cut(s) 104, 400, 419
BsnI GGCC 1 cut(s) 271
BsoBI CYCGRG 1 cut(s) 297
Bsp143I GATC 1 cut(s) 200
BspACI CCGC 1 cut(s) 181
BspANI GGCC 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 421
BsrDI GCAATG 3 cut(s) 203, 333, 463
BsrI ACTGG 2 cut(s) 405, 452
BssECI CCNNGG 2 cut(s) 135, 296
BssMI GATC 1 cut(s) 200
BssSI CACGAG 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 307
Bst4CI ACNGT 3 cut(s) 99, 165, 433
Bst6I CTCTTC 1 cut(s) 120
BstF5I GGATG 2 cut(s) 10, 483
BstKTI GATC 1 cut(s) 203
BstMBI GATC 1 cut(s) 200
BstMWI GCNNNNNNNGC 1 cut(s) 474
BstV1I GCAGC 2 cut(s) 77, 118
BsuRI GGCC 1 cut(s) 271
BtsCI GGATG 2 cut(s) 10, 483
BtsIMutI CAGTG 2 cut(s) 398, 459
BveI ACCTGC 1 cut(s) 421
Cfr13I GGNCC 2 cut(s) 270, 385
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviJI RGCY 5 cut(s) 68, 131, 271, 295, 477
CviKI_1 RGCY 5 cut(s) 68, 131, 271, 295, 477
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 385
Eco88I CYCGRG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 135
EcoT22I ATGCAT 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 135
FauI CCCGC 1 cut(s) 174
FauNDI CATATG 1 cut(s) 154
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 66, 132
FokI GGATG 2 cut(s) 17, 470
Fsp4HI GCNGC 2 cut(s) 66, 132
GluI GCNGC 2 cut(s) 66, 132
HaeIII GGCC 1 cut(s) 271
HapII CCGG 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 475
HinfI GANTC 3 cut(s) 171, 436, 457
HpaII CCGG 1 cut(s) 427
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 88, 198
Hpy188III TCNNGA 2 cut(s) 307, 354
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 3 cut(s) 99, 165, 433
HpyCH4V TGCA 3 cut(s) 152, 158, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 474
Kzo9I GATC 1 cut(s) 200
LpnPI CCDG 6 cut(s) 274, 339, 386, 426, 440, 465
Lsp1109I GCAGC 2 cut(s) 77, 118
LweI GCATC 2 cut(s) 139, 178
MaeIII GTNAC 2 cut(s) 367, 406
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MboII GAAGA 1 cut(s) 137
MluCI AATT 1 cut(s) 489
MlyI GAGTC 1 cut(s) 466
MnlI CCTC 8 cut(s) 25, 55, 70, 121, 244, 261, 306, 471
Mph1103I ATGCAT 1 cut(s) 154
MspI CCGG 1 cut(s) 427
MwoI GCNNNNNNNGC 1 cut(s) 474
NdeI CATATG 1 cut(s) 154
NdeII GATC 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 154
PaqCI CACCTGC 1 cut(s) 421
PfeI GAWTC 2 cut(s) 171, 436
PflMI CCANNNNNTGG 1 cut(s) 400
PkrI GCNGC 2 cut(s) 67, 133
PleI GAGTC 1 cut(s) 465
PpsI GAGTC 1 cut(s) 465
PsiI TTATAA 1 cut(s) 380
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 2 cut(s) 270, 385
SatI GCNGC 2 cut(s) 66, 132
Sau3AI GATC 1 cut(s) 200
Sau96I GGNCC 2 cut(s) 270, 385
SchI GAGTC 1 cut(s) 466
SetI ASST 4 cut(s) 141, 222, 415, 479
SfaNI GCATC 2 cut(s) 139, 178
SinI GGWCC 1 cut(s) 385
Sse9I AATT 1 cut(s) 489
SsiI CCGC 1 cut(s) 181
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 3 cut(s) 99, 165, 433
TasI AATT 1 cut(s) 489
TfiI GAWTC 2 cut(s) 171, 436
TscAI CASTG 2 cut(s) 405, 459
TseI GCWGC 2 cut(s) 65, 131
TspDTI ATGAA 2 cut(s) 21, 163
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 2 cut(s) 405, 459
Van91I CCANNNNNTGG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 232
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.