FvH4_2g17601

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010302
Physical Location & Seq
Reverse (-)
15128229 .. 15129869
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17601.t1

Sequence Viewer

Length: 606 bp
ATGATAGAGAGTTCGAATGGGCAAGAGGCAGCTGCATTTGAGGGGAGTTCAGATATGGAACCGTATGTGGGTATGGAGTTTGAAACAGAAGAGGCTGCCAAGGTGTTCTATGATGCATATGCAACACATATGGGATTTATTATGCGGGTTGATGCCTTCCGGAGATCATTGCGTGATGGTAAGGTAGTTTGGCGTAGACTTGTGTGCAATAAAGAGGGATTTCGAAAGACGAGGCCCAAAAGAAGTGAGTCCAGGAAGCCTCGGGCAATCACAAGAGAAGGGTGTAAAGCAATGATAGTGGTAAAAAGAGAAAAATCTGGAAAATGGATTGTCACGAGATTTATAAAGGAGCATAACCATTCACTGGTAGTTACACCTGCAAATGGTCGCCGGACTGTGCTTCTTTCTCAAACACCTGATGAAAAAGATATGAAAATTCGGGAATTGACTGCTGAGCTACAGCGTGAGCGAAAGAGGTCTGCAGCCTATCAAGAACAGCTTGACATGGTTTTGCGAGAGATGGAAGAGCATTCCAATCACCTCTCGAGAAACATTGACGATATAGTTCAAAGTGTGAAAGAGATTGAATCAAAAAGGGTAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

202

Amino Acids

23.38

Weight (kDa)

9.46

Isoelectric Point (pI)

60.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 36 - 123 6.4e-33 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 1 cut(s) 385
AccB7I CCANNNNNTGG 1 cut(s) 364
AccI GTMKAC 1 cut(s) 196
AccIII TCCGGA 1 cut(s) 159
AciI CCGC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 435
AfiI CCNNNNNNNGG 3 cut(s) 68, 364, 383
AgsI TTSAA 3 cut(s) 83, 569, 587
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 4 cut(s) 32, 457, 499, 602
AluI AGCT 4 cut(s) 32, 457, 499, 602
Ama87I CYCGRG 2 cut(s) 261, 544
Aor13HI TCCGGA 1 cut(s) 159
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 4 cut(s) 29, 32, 95, 482
ApoI RAATTY 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 530
AsuII TTCGAA 2 cut(s) 14, 223
AvaI CYCGRG 2 cut(s) 261, 544
BauI CACGAG 1 cut(s) 334
BbvI GCAGC 4 cut(s) 19, 41, 82, 494
BccI CCATC 2 cut(s) 170, 514
BciT130I CCWGG 1 cut(s) 253
BfmI CTRYAG 2 cut(s) 458, 480
BfuAI ACCTGC 1 cut(s) 385
BisI GCNGC 4 cut(s) 30, 33, 96, 483
BlpI GCTNAGC 1 cut(s) 453
BlsI GCNGC 4 cut(s) 31, 34, 97, 484
Bme1390I CCNGG 1 cut(s) 253
BmeT110I CYCGRG 2 cut(s) 261, 544
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 2 cut(s) 103, 142
Bpu1102I GCTNAGC 1 cut(s) 453
Bpu14I TTCGAA 2 cut(s) 14, 223
BsaJI CCNNGG 2 cut(s) 99, 260
BsaWI WCCGGW 1 cut(s) 159
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 364, 383
Bse1I ACTGG 1 cut(s) 369
Bse3DI GCAATG 2 cut(s) 167, 297
BseAI TCCGGA 1 cut(s) 159
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 99, 260
BseLI CCNNNNNNNGG 3 cut(s) 68, 364, 383
BseMI GCAATG 2 cut(s) 167, 297
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 369
BseXI GCAGC 4 cut(s) 19, 41, 82, 494
BshFI GGCC 1 cut(s) 235
BsiHKCI CYCGRG 2 cut(s) 261, 544
BsiSI CCGG 2 cut(s) 160, 391
BslI CCNNNNNNNGG 3 cut(s) 68, 364, 383
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 1 cut(s) 235
BsoBI CYCGRG 2 cut(s) 261, 544
Bsp119I TTCGAA 2 cut(s) 14, 223
Bsp13I TCCGGA 1 cut(s) 159
Bsp143I GATC 1 cut(s) 164
Bsp1720I GCTNAGC 1 cut(s) 453
BspACI CCGC 1 cut(s) 145
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 445
BspEI TCCGGA 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 484
BspMI ACCTGC 1 cut(s) 385
BspQI GCTCTTC 1 cut(s) 519
BspT104I TTCGAA 2 cut(s) 14, 223
BsrDI GCAATG 2 cut(s) 167, 297
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 99, 260
BssMI GATC 1 cut(s) 164
BssSI CACGAG 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 2 cut(s) 63, 397
Bst6I CTCTTC 2 cut(s) 84, 519
BstBI TTCGAA 2 cut(s) 14, 223
BstDEI CTNAG 1 cut(s) 453
BstKTI GATC 1 cut(s) 167
BstMBI GATC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 251
BstSFI CTRYAG 2 cut(s) 458, 480
BstV1I GCAGC 4 cut(s) 19, 41, 82, 494
BsuRI GGCC 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 362
BveI ACCTGC 1 cut(s) 385
Cfr13I GGNCC 1 cut(s) 234
CspCI CAANNNNNGTGG 2 cut(s) 279, 314
CviAII CATG 1 cut(s) 505
CviJI RGCY 8 cut(s) 32, 95, 235, 259, 457, 485, 499, 602
CviKI_1 RGCY 8 cut(s) 32, 95, 235, 259, 457, 485, 499, 602
DdeI CTNAG 1 cut(s) 453
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
Eam1104I CTCTTC 2 cut(s) 84, 519
EarI CTCTTC 2 cut(s) 84, 519
Eco130I CCWWGG 1 cut(s) 99
Eco88I CYCGRG 2 cut(s) 261, 544
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 99
EcoT22I ATGCAT 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 1 cut(s) 508
FalI AAGNNNNNCTT 3 cut(s) 483, 515, 586
FatI CATG 1 cut(s) 504
FauI CCCGC 1 cut(s) 138
FauNDI CATATG 2 cut(s) 118, 129
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 4 cut(s) 30, 33, 96, 483
Fsp4HI GCNGC 4 cut(s) 30, 33, 96, 483
GluI GCNGC 4 cut(s) 30, 33, 96, 483
HaeIII GGCC 1 cut(s) 235
HapII CCGG 2 cut(s) 160, 391
Hin1II CATG 1 cut(s) 508
HinfI GANTC 2 cut(s) 248, 587
HpaII CCGG 2 cut(s) 160, 391
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 7 cut(s) 160, 318, 334, 440, 491, 544, 546
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 166, 272
HpyCH4III ACNGT 2 cut(s) 63, 397
HpyCH4V TGCA 6 cut(s) 35, 116, 122, 207, 380, 482
HpyF3I CTNAG 1 cut(s) 453
Hsp92II CATG 1 cut(s) 508
Kpn2I TCCGGA 1 cut(s) 159
Kzo9I GATC 1 cut(s) 164
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 8 cut(s) 173, 238, 265, 303, 350, 390, 404, 429
Lsp1109I GCAGC 4 cut(s) 19, 41, 82, 494
LweI GCATC 2 cut(s) 103, 142
MaeIII GTNAC 2 cut(s) 331, 370
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MboII GAAGA 2 cut(s) 101, 536
MluCI AATT 2 cut(s) 435, 443
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 8 cut(s) 19, 34, 85, 208, 225, 270, 468, 551
Mph1103I ATGCAT 1 cut(s) 118
MroI TCCGGA 1 cut(s) 159
MseI TTAA 1 cut(s) 604
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 2 cut(s) 160, 391
MspR9I CCNGG 1 cut(s) 253
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 1 cut(s) 253
NdeI CATATG 2 cut(s) 118, 129
NdeII GATC 1 cut(s) 164
NlaIII CATG 1 cut(s) 508
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 331
NsiI ATGCAT 1 cut(s) 118
NspV TTCGAA 2 cut(s) 14, 223
PaeR7I CTCGAG 1 cut(s) 544
PaqCI CACCTGC 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 519
PctI GAATGC 1 cut(s) 529
PfeI GAWTC 1 cut(s) 587
PflMI CCANNNNNTGG 1 cut(s) 364
PfoI TCCNGGA 1 cut(s) 251
PkrI GCNGC 4 cut(s) 31, 34, 97, 484
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PsiI TTATAA 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 234
PstI CTGCAG 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 519
SaqAI TTAA 1 cut(s) 604
SatI GCNGC 4 cut(s) 30, 33, 96, 483
Sau3AI GATC 1 cut(s) 164
Sau96I GGNCC 1 cut(s) 234
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 253
SfaNI GCATC 2 cut(s) 103, 142
SfcI CTRYAG 2 cut(s) 458, 480
Sfr274I CTCGAG 1 cut(s) 544
SfuI TTCGAA 2 cut(s) 14, 223
SlaI CTCGAG 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
Sse9I AATT 2 cut(s) 435, 443
SsiI CCGC 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 63, 397
TaqI TCGA 3 cut(s) 14, 223, 545
TasI AATT 2 cut(s) 435, 443
TfiI GAWTC 1 cut(s) 587
Tru1I TTAA 1 cut(s) 604
Tru9I TTAA 1 cut(s) 604
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 4 cut(s) 29, 32, 95, 482
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 2 cut(s) 435, 446
TspRI CASTG 1 cut(s) 369
Van91I CCANNNNNTGG 1 cut(s) 364
XapI RAATTY 1 cut(s) 435
XhoI CTCGAG 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 196
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.