Rmu_sc0022527.1_g000001

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022527.1
Physical Location & Seq
Reverse (-)
1 .. 1407
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022527.1_g000001.1.cds

Sequence Viewer

Length: 462 bp
ctgccaacaatggatgaacaaccatctacgagcaaagatgaggatatgatagagagttcaaatgggaaagaggcagccacatttgaggggagttcagatatggaaccgtatgtgggtatggagtttgaaacggaagaggctgccaaggtgttctatgatgcatatgcaacacagttgggattcattatgcgggttgatgcctttcggagatcattgcgtgatggtaaggtagtttggcgtagacttgtgtgtaataaagagggatttcgtaagacgaggcccaaaagaagtgagaacaggaagcctcgggcaatcacgagagaagggtgtaaagcaatgatagtggtaaagagagaaaaatcaggaaaatggattgtaacgagatttataaaggaccataaccattcactggtagttacacctgcaaatggtcgccggactgtgattctatctcaaacacca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

17.66

Weight (kDa)

9.57

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
AarI CACCTGC 1 cut(s) 430
Acc36I ACCTGC 1 cut(s) 430
AccB7I CCANNNNNTGG 1 cut(s) 409
AccI GTMKAC 1 cut(s) 241
AciI CCGC 1 cut(s) 190
AfiI CCNNNNNNNGG 3 cut(s) 113, 409, 428
AgsI TTSAA 2 cut(s) 60, 128
Ama87I CYCGRG 1 cut(s) 306
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 74, 140
AspS9I GGNCC 2 cut(s) 279, 394
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 1 cut(s) 394
BauI CACGAG 1 cut(s) 316
BbvI GCAGC 2 cut(s) 86, 127
BccI CCATC 2 cut(s) 31, 215
BfuAI ACCTGC 1 cut(s) 430
BisI GCNGC 2 cut(s) 75, 141
BlsI GCNGC 2 cut(s) 76, 142
Bme18I GGWCC 1 cut(s) 394
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 2 cut(s) 279, 394
BmiI GGNNCC 1 cut(s) 105
BmsI GCATC 2 cut(s) 148, 187
BsaJI CCNNGG 2 cut(s) 144, 305
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 409, 428
Bse1I ACTGG 1 cut(s) 414
Bse3DI GCAATG 2 cut(s) 212, 342
BseDI CCNNGG 2 cut(s) 144, 305
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 3 cut(s) 113, 409, 428
BseMI GCAATG 2 cut(s) 212, 342
BseNI ACTGG 1 cut(s) 414
BseXI GCAGC 2 cut(s) 86, 127
BshFI GGCC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 1 cut(s) 436
BslI CCNNNNNNNGG 3 cut(s) 113, 409, 428
BsnI GGCC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 306
Bsp143I GATC 1 cut(s) 209
BspACI CCGC 1 cut(s) 190
BspANI GGCC 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 430
BsrDI GCAATG 2 cut(s) 212, 342
BsrI ACTGG 1 cut(s) 414
BssECI CCNNGG 2 cut(s) 144, 305
BssMI GATC 1 cut(s) 209
BssSI CACGAG 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 144
Bst2BI CACGAG 1 cut(s) 316
Bst4CI ACNGT 3 cut(s) 108, 174, 442
Bst6I CTCTTC 1 cut(s) 129
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 1 cut(s) 212
BstMBI GATC 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 86, 127
BsuRI GGCC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 407
BveI ACCTGC 1 cut(s) 430
Cfr13I GGNCC 2 cut(s) 279, 394
CspCI CAANNNNNGTGG 2 cut(s) 324, 359
CviJI RGCY 4 cut(s) 77, 140, 280, 304
CviKI_1 RGCY 4 cut(s) 77, 140, 280, 304
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 144
FauI CCCGC 1 cut(s) 183
FauNDI CATATG 1 cut(s) 163
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 2 cut(s) 75, 141
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 75, 141
GluI GCNGC 2 cut(s) 75, 141
HaeIII GGCC 1 cut(s) 280
HapII CCGG 1 cut(s) 436
HinfI GANTC 2 cut(s) 180, 445
HpaII CCGG 1 cut(s) 436
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 97, 207
Hpy188III TCNNGA 2 cut(s) 316, 363
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 3 cut(s) 108, 174, 442
HpyCH4V TGCA 3 cut(s) 161, 167, 425
Kzo9I GATC 1 cut(s) 209
LpnPI CCDG 5 cut(s) 283, 348, 395, 435, 449
Lsp1109I GCAGC 2 cut(s) 86, 127
LweI GCATC 2 cut(s) 148, 187
MaeIII GTNAC 2 cut(s) 376, 415
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 1 cut(s) 146
MnlI CCTC 7 cut(s) 34, 64, 79, 130, 253, 270, 315
Mph1103I ATGCAT 1 cut(s) 163
MspI CCGG 1 cut(s) 436
NdeI CATATG 1 cut(s) 163
NdeII GATC 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 105
NsiI ATGCAT 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 430
PfeI GAWTC 2 cut(s) 180, 445
PflMI CCANNNNNTGG 1 cut(s) 409
PkrI GCNGC 2 cut(s) 76, 142
PsiI TTATAA 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 2 cut(s) 279, 394
SatI GCNGC 2 cut(s) 75, 141
Sau3AI GATC 1 cut(s) 209
Sau96I GGNCC 2 cut(s) 279, 394
SetI ASST 3 cut(s) 150, 231, 424
SfaNI GCATC 2 cut(s) 148, 187
SinI GGWCC 1 cut(s) 394
SsiI CCGC 1 cut(s) 190
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 3 cut(s) 108, 174, 442
TfiI GAWTC 2 cut(s) 180, 445
TscAI CASTG 1 cut(s) 414
TseI GCWGC 2 cut(s) 74, 140
TspDTI ATGAA 2 cut(s) 30, 172
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 1 cut(s) 414
Van91I CCANNNNNTGG 1 cut(s) 409
VpaK11BI GGWCC 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.