MD05G1156200.v1.1

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0010302
Physical Location & Seq
Reverse (-)
28604893 .. 28607782
2890 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1156200.v1.1.491

Sequence Viewer

Length: 627 bp
ATGAGCAAGGATGAGGACGTGTTAGAGAGTTCCAATAGGAAAGAGGCAGTCACATATGAGGGGAACTCGGATACAGAACCATTTGTGGGTATGGAGTTTGAATCTGAAGAGGCTGCCAAAGTGTTCTACGATGGATATGCAACACAAGTGGGCTTCATTATGCGAGTCGATGCCTTCCGGAGATCAATGCGTGATGGTAAGGTAGTTTGGCGGAGGCTTGTGTGTAACAAAGAGGGATTTCGCAAGACCCGAGCCAAAAGAACTGAGAACAGGAAGCCTCGAGCAATCACCAGAGAAGGGTGCAAAGCGATGCTTGTGGTAAAGAAAGACAAATCAGGAAAATGGATCGTAACACGATTTATAAAGGAGCATAACCATCCACTAGTAGGTACACCTGCAAATGGTCGCCGCAGTATGCTTCTGTCTCAAACACCAGACGAAAAAGATCTGAAAATTCGGGAGTTGACTGCTGAGTTGCAACGTGAGCGAAAGAGGTCTGCCAACTATCAAGAACAGCTTGATATGGTTTTGAGGCAGATGGAAGAACATTCCAATCACTTGTCGAGAAACATTGACGCTATAGTCCAGAGCGTAAAAGAAATTGAATCAAAGAGGGTAGCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

209

Amino Acids

24.19

Weight (kDa)

9.58

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 42 - 129 1.8e-32 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AarI CACCTGC 1 cut(s) 403
AasI GACNNNNNNGTC 1 cut(s) 581
Acc36I ACCTGC 1 cut(s) 403
AccIII TCCGGA 1 cut(s) 177
AciI CCGC 2 cut(s) 211, 409
AclWI GGATC 1 cut(s) 353
AcsI RAATTY 1 cut(s) 453
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 1 cut(s) 391
AfiI CCNNNNNNNGG 4 cut(s) 86, 297, 386, 401
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 2 cut(s) 101, 605
AhlI ACTAGT 1 cut(s) 382
AjiI CACGTC 1 cut(s) 19
AluBI AGCT 1 cut(s) 517
AluI AGCT 1 cut(s) 517
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 1 cut(s) 353
Ama87I CYCGRG 2 cut(s) 249, 279
Aor13HI TCCGGA 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 453
AsuHPI GGTGA 1 cut(s) 280
AvaI CYCGRG 2 cut(s) 249, 279
BbvI GCAGC 1 cut(s) 100
BccI CCATC 4 cut(s) 125, 188, 384, 532
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BciVI GTATCC 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 429
BcuI ACTAGT 1 cut(s) 382
BfaI CTAG 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 579
BfuAI ACCTGC 1 cut(s) 403
BfuI GTATCC 1 cut(s) 64
BglII AGATCT 1 cut(s) 445
BisI GCNGC 2 cut(s) 114, 409
BlsI GCNGC 2 cut(s) 115, 410
BmeT110I CYCGRG 2 cut(s) 249, 279
BmgBI CACGTC 1 cut(s) 19
BmsI GCATC 2 cut(s) 160, 300
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BsaWI WCCGGW 1 cut(s) 177
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 297, 386, 401
BseAI TCCGGA 1 cut(s) 177
BseGI GGATG 2 cut(s) 16, 376
BseLI CCNNNNNNNGG 4 cut(s) 86, 297, 386, 401
BseMII CTCAG 2 cut(s) 255, 462
BseXI GCAGC 1 cut(s) 100
BsiHKCI CYCGRG 2 cut(s) 249, 279
BsiSI CCGG 1 cut(s) 178
BslI CCNNNNNNNGG 4 cut(s) 86, 297, 386, 401
BsmAI GTCTC 1 cut(s) 429
BsoBI CYCGRG 2 cut(s) 249, 279
Bsp13I TCCGGA 1 cut(s) 177
Bsp143I GATC 3 cut(s) 182, 345, 445
BspACI CCGC 2 cut(s) 211, 409
BspCNI CTCAG 2 cut(s) 256, 463
BspEI TCCGGA 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 1 cut(s) 353
BssMI GATC 3 cut(s) 182, 345, 445
Bst6I CTCTTC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 264, 471
BstF5I GGATG 2 cut(s) 16, 376
BstKTI GATC 3 cut(s) 185, 348, 448
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 3 cut(s) 182, 345, 445
BstMWI GCNNNNNNNGC 1 cut(s) 484
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BsuI GTATCC 1 cut(s) 64
BtgZI GCGATG 1 cut(s) 323
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 2 cut(s) 16, 376
BveI ACCTGC 1 cut(s) 403
CseI GACGC 1 cut(s) 584
Csp6I GTAC 1 cut(s) 390
CspCI CAANNNNNGTGG 2 cut(s) 129, 164
CviJI RGCY 6 cut(s) 113, 153, 217, 254, 277, 517
CviKI_1 RGCY 6 cut(s) 113, 153, 217, 254, 277, 517
CviQI GTAC 1 cut(s) 390
DdeI CTNAG 2 cut(s) 264, 471
DpnI GATC 3 cut(s) 184, 347, 447
DpnII GATC 3 cut(s) 182, 345, 445
DrdI GACNNNNNNGTC 1 cut(s) 581
DseDI GACNNNNNNGTC 1 cut(s) 581
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
EciI GGCGGA 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 126
Eco88I CYCGRG 2 cut(s) 249, 279
FalI AAGNNNNNCTT 4 cut(s) 297, 329, 501, 533
FauNDI CATATG 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 114, 409
FokI GGATG 2 cut(s) 23, 363
Fsp4HI GCNGC 2 cut(s) 114, 409
FspBI CTAG 1 cut(s) 383
GluI GCNGC 2 cut(s) 114, 409
HapII CCGG 1 cut(s) 178
HgaI GACGC 1 cut(s) 584
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HinfI GANTC 3 cut(s) 101, 165, 605
HpaII CCGG 1 cut(s) 178
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 392, 465
Hpy188I TCNGA 3 cut(s) 70, 106, 450
Hpy188III TCNNGA 6 cut(s) 178, 336, 458, 509, 564, 586
Hpy8I GTNNAC 2 cut(s) 392, 465
HpyAV CCTTC 2 cut(s) 184, 290
HpyCH4IV ACGT 2 cut(s) 18, 481
HpyCH4V TGCA 4 cut(s) 140, 303, 398, 478
HpyF10VI GCNNNNNNNGC 1 cut(s) 484
HpyF3I CTNAG 2 cut(s) 264, 471
HpySE526I ACGT 2 cut(s) 18, 481
Kpn2I TCCGGA 1 cut(s) 177
Kzo9I GATC 3 cut(s) 182, 345, 445
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 7 cut(s) 191, 256, 304, 321, 408, 447, 599
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 2 cut(s) 160, 300
MaeI CTAG 1 cut(s) 383
MaeII ACGT 2 cut(s) 18, 481
MaeIII GTNAC 3 cut(s) 49, 224, 349
MalI GATC 3 cut(s) 184, 347, 447
MboI GATC 3 cut(s) 182, 345, 445
MboII GAAGA 2 cut(s) 119, 554
MflI RGATCY 1 cut(s) 445
MluCI AATT 2 cut(s) 453, 600
MlyI GAGTC 1 cut(s) 174
MroI TCCGGA 1 cut(s) 177
MspI CCGG 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 484
NdeI CATATG 1 cut(s) 55
NdeII GATC 3 cut(s) 182, 345, 445
NmuCI GTSAC 1 cut(s) 49
PaeR7I CTCGAG 1 cut(s) 279
PaqCI CACCTGC 1 cut(s) 403
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PfeI GAWTC 2 cut(s) 101, 605
PkrI GCNGC 2 cut(s) 115, 410
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PsiI TTATAA 1 cut(s) 362
PspXI VCTCGAGB 1 cut(s) 279
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
SatI GCNGC 2 cut(s) 114, 409
Sau3AI GATC 3 cut(s) 182, 345, 445
SchI GAGTC 1 cut(s) 174
SetI ASST 8 cut(s) 21, 204, 391, 397, 484, 497, 519, 625
SfaNI GCATC 2 cut(s) 160, 300
SfcI CTRYAG 1 cut(s) 579
Sfr274I CTCGAG 1 cut(s) 279
SlaI CTCGAG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
SpeI ACTAGT 1 cut(s) 382
Sse9I AATT 2 cut(s) 453, 600
SsiI CCGC 2 cut(s) 211, 409
SspMI CTAG 1 cut(s) 383
TaiI ACGT 2 cut(s) 21, 484
TaqI TCGA 3 cut(s) 168, 280, 563
TasI AATT 2 cut(s) 453, 600
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 2 cut(s) 101, 605
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 145
XapI RAATTY 1 cut(s) 453
XhoI CTCGAG 1 cut(s) 279
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.