Rh6BG263900

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010302
Physical Location & Seq
Reverse (-)
47889612 .. 47895617
6006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG263900.1

Sequence Viewer

Length: 777 bp
ATGGCGCAACGGAGCAGCTCCTTCTTGGCTTGGATCCGATCTGGGATGGCGTCTCTCCATGGCGTGACGGAGTTGGTAAATCGATGCTGGCGGTCCAACAAAGCGAACTATTGGGTCCGGATCCCTCTGCCAACAATGGATGAACAACCATCTACGAGCAAAGATGAGGATATGATAGAGAGTTCAAATGGGAAAGAGGCAGCCACATTTGAGGGGAGTTCAGATATGGAACCGTATGTGGGTATGGAGTTTGAAACGGAAGAGGCTGCCAAGGTGTTCTATGATGCATATGCAACACAGTTGGGATTCATTATGCGGGTTGATGCCTTTCGGAGATCATTGCGTGATGGTAAGGTAGTTTGGCGTAGACTTGTGTGTAATAAAGAGGGATTTCGTAAGACGAGGCCCAAAAGAAGTGAGAACAGGAAGCCTCGGGCAATCACGAGAGAAGGGTGTAAAGCAATGATAGTGGTAAAGAGAGAAAAATCAGGAAAATGGATTGTAACGAGATTTATAAAGGACCATAACCATTCACTGGTAGTTACACCTGCAAATGGTCGCCGGACTGTGATTCTATCTCAAACACCAGATGAAAAAGATATGAAAATTCGAGAGTTGACTGCTGAACTACAGCGTGAGCGAAAGAGATCTGCAGCTTATCAAGAACAGCTTGACATGGTTTTGAGGGAGATGGAAGAGCATTCCAATCACCTCTCGAGAAACATTGCCGATATAGTTCAGAGTGTGAAAGAGATTGAATCAAAGAGGATAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

258

Amino Acids

29.9

Weight (kDa)

9.57

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 93 - 180 3.1e-32 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
AarI CACCTGC 1 cut(s) 556
Acc36I ACCTGC 1 cut(s) 556
AccB7I CCANNNNNTGG 1 cut(s) 535
AccI GTMKAC 1 cut(s) 367
AccIII TCCGGA 1 cut(s) 117
AciI CCGC 2 cut(s) 91, 316
AclWI GGATC 4 cut(s) 28, 41, 115, 128
AcsI RAATTY 1 cut(s) 606
AcyI GRCGYC 1 cut(s) 50
AfiI CCNNNNNNNGG 3 cut(s) 239, 535, 554
AgsI TTSAA 3 cut(s) 186, 254, 758
AluBI AGCT 3 cut(s) 18, 656, 670
AluI AGCT 3 cut(s) 18, 656, 670
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 4 cut(s) 28, 41, 115, 128
Ama87I CYCGRG 2 cut(s) 432, 715
Aor13HI TCCGGA 1 cut(s) 117
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 4 cut(s) 15, 200, 266, 653
ApoI RAATTY 1 cut(s) 606
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 4 cut(s) 93, 115, 405, 520
AsuHPI GGTGA 1 cut(s) 701
AvaI CYCGRG 2 cut(s) 432, 715
AvaII GGWCC 3 cut(s) 93, 115, 520
BamHI GGATCC 2 cut(s) 33, 120
BauI CACGAG 1 cut(s) 442
BbvI GCAGC 4 cut(s) 27, 212, 253, 665
BccI CCATC 4 cut(s) 40, 157, 341, 685
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 1 cut(s) 775
BfmI CTRYAG 2 cut(s) 629, 651
BfuAI ACCTGC 1 cut(s) 556
BglII AGATCT 1 cut(s) 647
BisI GCNGC 4 cut(s) 16, 201, 267, 654
BlsI GCNGC 4 cut(s) 17, 202, 268, 655
Bme18I GGWCC 3 cut(s) 93, 115, 520
BmeT110I CYCGRG 2 cut(s) 432, 715
BmgT120I GGNCC 4 cut(s) 93, 115, 405, 520
BmiI GGNNCC 4 cut(s) 35, 116, 122, 231
BmsI GCATC 3 cut(s) 74, 274, 313
Bsa29I ATCGAT 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 58, 270, 431
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 535, 554
Bse1I ACTGG 1 cut(s) 540
Bse3DI GCAATG 3 cut(s) 338, 468, 723
BseAI TCCGGA 1 cut(s) 117
BseCI ATCGAT 1 cut(s) 82
BseDI CCNNGG 3 cut(s) 58, 270, 431
BseGI GGATG 2 cut(s) 51, 145
BseLI CCNNNNNNNGG 3 cut(s) 239, 535, 554
BseMI GCAATG 3 cut(s) 338, 468, 723
BseNI ACTGG 1 cut(s) 540
BseXI GCAGC 4 cut(s) 27, 212, 253, 665
BshFI GGCC 1 cut(s) 406
BshVI ATCGAT 1 cut(s) 82
BsiHKCI CYCGRG 2 cut(s) 432, 715
BsiSI CCGG 2 cut(s) 118, 562
BslI CCNNNNNNNGG 3 cut(s) 239, 535, 554
BsmAI GTCTC 1 cut(s) 57
BsmBI CGTCTC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 700
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 2 cut(s) 432, 715
Bsp13I TCCGGA 1 cut(s) 117
Bsp143I GATC 5 cut(s) 33, 38, 120, 335, 647
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 2 cut(s) 91, 316
BspANI GGCC 1 cut(s) 406
BspDI ATCGAT 1 cut(s) 82
BspEI TCCGGA 1 cut(s) 117
BspLI GGNNCC 4 cut(s) 35, 116, 122, 231
BspMAI CTGCAG 1 cut(s) 655
BspMI ACCTGC 1 cut(s) 556
BspPI GGATC 4 cut(s) 28, 41, 115, 128
BspQI GCTCTTC 1 cut(s) 690
BsrDI GCAATG 3 cut(s) 338, 468, 723
BsrI ACTGG 1 cut(s) 540
BssECI CCNNGG 3 cut(s) 58, 270, 431
BssMI GATC 5 cut(s) 33, 38, 120, 335, 647
BssNI GRCGYC 1 cut(s) 50
BssSI CACGAG 1 cut(s) 442
BssT1I CCWWGG 2 cut(s) 58, 270
Bst2BI CACGAG 1 cut(s) 442
Bst4CI ACNGT 3 cut(s) 234, 300, 568
Bst6I CTCTTC 2 cut(s) 255, 690
BstACI GRCGYC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 89
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 2 cut(s) 51, 145
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 36, 41, 123, 338, 650
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 5 cut(s) 33, 38, 120, 335, 647
BstSFI CTRYAG 2 cut(s) 629, 651
BstV1I GCAGC 4 cut(s) 27, 212, 253, 665
BstX2I RGATCY 3 cut(s) 33, 120, 647
BstYI RGATCY 3 cut(s) 33, 120, 647
Bsu15I ATCGAT 1 cut(s) 82
BsuRI GGCC 1 cut(s) 406
BsuTUI ATCGAT 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 2 cut(s) 51, 145
BtsIMutI CAGTG 1 cut(s) 533
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 1 cut(s) 89
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 4 cut(s) 93, 115, 405, 520
ClaI ATCGAT 1 cut(s) 82
CseI GACGC 1 cut(s) 39
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 2 cut(s) 59, 676
CviJI RGCY 9 cut(s) 18, 29, 203, 266, 406, 430, 656, 670, 773
CviKI_1 RGCY 9 cut(s) 18, 29, 203, 266, 406, 430, 656, 670, 773
DpnI GATC 5 cut(s) 35, 40, 122, 337, 649
DpnII GATC 5 cut(s) 33, 38, 120, 335, 647
Eam1104I CTCTTC 2 cut(s) 255, 690
EarI CTCTTC 2 cut(s) 255, 690
Eco130I CCWWGG 2 cut(s) 58, 270
Eco47I GGWCC 3 cut(s) 93, 115, 520
Eco88I CYCGRG 2 cut(s) 432, 715
EcoT14I CCWWGG 2 cut(s) 58, 270
EcoT22I ATGCAT 1 cut(s) 289
ErhI CCWWGG 2 cut(s) 58, 270
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 2 cut(s) 62, 679
FalI AAGNNNNNCTT 2 cut(s) 654, 686
FatI CATG 2 cut(s) 58, 675
FauI CCCGC 1 cut(s) 309
FauNDI CATATG 1 cut(s) 289
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 4 cut(s) 16, 201, 267, 654
FokI GGATG 2 cut(s) 58, 152
Fsp4HI GCNGC 4 cut(s) 16, 201, 267, 654
FspBI CTAG 1 cut(s) 775
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 16, 201, 267, 654
HaeIII GGCC 1 cut(s) 406
HapII CCGG 2 cut(s) 118, 562
HgaI GACGC 1 cut(s) 39
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 2 cut(s) 62, 679
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HinfI GANTC 3 cut(s) 306, 571, 758
HpaII CCGG 2 cut(s) 118, 562
HphI GGTGA 1 cut(s) 701
Hpy166II GTNNAC 2 cut(s) 368, 618
Hpy188I TCNGA 4 cut(s) 38, 223, 333, 741
Hpy188III TCNNGA 7 cut(s) 118, 442, 489, 611, 662, 715, 717
Hpy8I GTNNAC 2 cut(s) 368, 618
HpyAV CCTTC 2 cut(s) 31, 443
HpyCH4III ACNGT 3 cut(s) 234, 300, 568
HpyCH4V TGCA 4 cut(s) 287, 293, 551, 653
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 2 cut(s) 62, 679
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 117
Kzo9I GATC 5 cut(s) 33, 38, 120, 335, 647
LguI GCTCTTC 1 cut(s) 690
LmnI GCTCC 2 cut(s) 12, 23
LpnPI CCDG 9 cut(s) 27, 73, 131, 409, 474, 521, 561, 575, 600
Lsp1109I GCAGC 4 cut(s) 27, 212, 253, 665
LweI GCATC 3 cut(s) 74, 274, 313
MaeI CTAG 1 cut(s) 775
MaeIII GTNAC 3 cut(s) 64, 502, 541
MalI GATC 5 cut(s) 35, 40, 122, 337, 649
MboI GATC 5 cut(s) 33, 38, 120, 335, 647
MboII GAAGA 2 cut(s) 272, 707
MflI RGATCY 3 cut(s) 33, 120, 647
MluCI AATT 1 cut(s) 606
MmeI TCCRAC 1 cut(s) 120
Mph1103I ATGCAT 1 cut(s) 289
MroI TCCGGA 1 cut(s) 117
MspI CCGG 2 cut(s) 118, 562
Mva1269I GAATGC 1 cut(s) 700
NcoI CCATGG 1 cut(s) 58
NdeI CATATG 1 cut(s) 289
NdeII GATC 5 cut(s) 33, 38, 120, 335, 647
NlaIII CATG 2 cut(s) 62, 679
NlaIV GGNNCC 4 cut(s) 35, 116, 122, 231
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 289
PaeR7I CTCGAG 1 cut(s) 715
PaqCI CACCTGC 1 cut(s) 556
PciSI GCTCTTC 1 cut(s) 690
PctI GAATGC 1 cut(s) 700
PfeI GAWTC 3 cut(s) 306, 571, 758
PflMI CCANNNNNTGG 1 cut(s) 535
PkrI GCNGC 4 cut(s) 17, 202, 268, 655
PsiI TTATAA 1 cut(s) 515
PspN4I GGNNCC 4 cut(s) 35, 116, 122, 231
PspPI GGNCC 4 cut(s) 93, 115, 405, 520
PstI CTGCAG 1 cut(s) 655
PsuI RGATCY 3 cut(s) 33, 120, 647
SapI GCTCTTC 1 cut(s) 690
SatI GCNGC 4 cut(s) 16, 201, 267, 654
Sau3AI GATC 5 cut(s) 33, 38, 120, 335, 647
Sau96I GGNCC 4 cut(s) 93, 115, 405, 520
SetI ASST 7 cut(s) 20, 276, 357, 550, 658, 672, 714
SfaNI GCATC 3 cut(s) 74, 274, 313
SfcI CTRYAG 2 cut(s) 629, 651
Sfr274I CTCGAG 1 cut(s) 715
SinI GGWCC 3 cut(s) 93, 115, 520
SlaI CTCGAG 1 cut(s) 715
SmlI CTYRAG 1 cut(s) 715
SmoI CTYRAG 1 cut(s) 715
Sse9I AATT 1 cut(s) 606
SsiI CCGC 2 cut(s) 91, 316
SspMI CTAG 1 cut(s) 775
StyI CCWWGG 2 cut(s) 58, 270
TaaI ACNGT 3 cut(s) 234, 300, 568
TaqI TCGA 3 cut(s) 82, 610, 716
TasI AATT 1 cut(s) 606
TfiI GAWTC 3 cut(s) 306, 571, 758
TscAI CASTG 1 cut(s) 540
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 4 cut(s) 15, 200, 266, 653
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 4 cut(s) 156, 298, 606, 617
TspGWI ACGGA 3 cut(s) 25, 83, 272
TspRI CASTG 1 cut(s) 540
Van91I CCANNNNNTGG 1 cut(s) 535
VpaK11BI GGWCC 3 cut(s) 93, 115, 520
XapI RAATTY 1 cut(s) 606
XhoI CTCGAG 1 cut(s) 715
XmiI GTMKAC 1 cut(s) 367
XspI CTAG 1 cut(s) 775
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.