Rorug06G0147600

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010302
Physical Location & Seq
Forward (+)
21158104 .. 21160381
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0147600.1

Sequence Viewer

Length: 1194 bp
ATGGCATCTGCATCTCTACTCAAGTCTTCTCCAGTTCTTGACAAATCTGAGTGGGTGAAAGGCCAGACCCTCCTCCGCCAGCCTTCTGTCTCATCCGTCGTCAGATGCCACCCTACCGCCACATCTGGTCTTACCATTCGTGCTTCATATGCTGATGAACTTGTCAAGACCGCTAAAACTGTTGCATCCCCTGGCCATGGAATTTTGGCCATGGATGAATCCAATGCAACCTGTGGCAAGCGTCTGGCTTCAATTGGGCTAGAGAACACTGAGGCTAACCGCCAAGCCTACCGTACCCTCCTTGTGTCAGTCCCTGGCCTTGGCAACTACGTCTCTGGTGCCATTCTTTTCGAGGAGACTCTCTACCAATCCACTGTTGATGGTAAGAAGATTGTGGATGTGCTCGTTGAGCAAGGCATCGTCCCTGGGATCAAAGTTGACAAGGGTTTGGTGCCCCTAGCTGGTTCCAACAATGAGTCATGGTGCCAAGGTCTTGATGGACTTGCTTCTCGCACAGCTGCTTACTACCAACAGGGAGCTCGTTTCGCCAAATGGCGTACTGTTGTGAGCATTCCCAATGGTCCATCCGCTCTTGCAGTAAAGGAAGCAGCCTGGGGTCTCGCTCGCTATGCTGCCATTTCTCAAGAAAGTGGATTGGTCCCAATCGTAGAGCCAGAGATCTTGCTTGATGGTGAGCACGGCATTGACAGGACCTTCGAAGTTGCTCAAGCAGTGTGGGCTGAGGTTTTCTTCTACCTTGCCCAGAACAATGTCTTGTTTGAGGGTATCCTCCTCAAGCCAAGTATGGTTACTCCTGGAGCTGAGTGCAAGGAAAGAGCCACCCCGGAACAGGTTGCCGACTACACTCTCAAGCTCCTCCACAGGAGAATTCCCCCAGCAGTCCCTGGAATCATGTTTTTGTCTGGTGGACAATCTGAGGTTGAGGCAACCCTGAACTTGAATGCAATGAACCAATCACCAAACCCGTGGCATGTGTCATTCTCCTATGCCAGAGCTCTCCAGAACACTTGCCTGAAGACATGGGGAGGCCGACCAGAGAACGTGAAGGCCGCTCAGGAGGCATTACTTATCCGTGCCAAGGCCAACTCTCTTGCTCAGTTCGGAAAGTACACCGGAGAAGGAGAGTCAGAGGAGGCAAAGAAAGAATTGTTCGTCAAGGGCTACGTGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

397

Amino Acids

42.81

Weight (kDa)

6.97

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycolytic PF00274 53 - 397 6.2e-158 Fructose-bisphosphate aldolase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 338, 451, 483
AccBSI CCGCTC 2 cut(s) 590, 1073
AciI CCGC 6 cut(s) 76, 117, 171, 280, 588, 1071
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 2 cut(s) 193, 207
AcsI RAATTY 2 cut(s) 201, 888
AcuI CTGAAG 1 cut(s) 1055
AfaI GTAC 4 cut(s) 295, 559, 1130, 1190
AfiI CCNNNNNNNGG 5 cut(s) 197, 320, 461, 850, 1099
AflIII ACRYGT 1 cut(s) 1185
AgsI TTSAA 2 cut(s) 252, 961
AjnI CCWGG 6 cut(s) 190, 313, 424, 611, 814, 904
AluBI AGCT 6 cut(s) 461, 518, 539, 821, 874, 1016
AluI AGCT 6 cut(s) 461, 518, 539, 821, 874, 1016
Alw21I GWGCWC 4 cut(s) 405, 541, 699, 1018
Alw26I GTCTC 4 cut(s) 94, 337, 350, 623
AlwI GGATC 1 cut(s) 437
AlwNI CAGNNNCTG 2 cut(s) 314, 905
AoxI GGCC 7 cut(s) 61, 193, 207, 316, 1048, 1068, 1101
ApeKI GCWGC 3 cut(s) 518, 608, 632
ApoI RAATTY 2 cut(s) 201, 888
ArsI GACNNNNNNTTYG 2 cut(s) 698, 730
AspS9I GGNCC 3 cut(s) 581, 658, 711
AsuC2I CCSGG 1 cut(s) 845
AsuHPI GGTGA 3 cut(s) 67, 704, 969
AsuII TTCGAA 1 cut(s) 717
AvaII GGWCC 3 cut(s) 581, 658, 711
BaeGI GKGCMC 1 cut(s) 456
BalI TGGCCA 2 cut(s) 195, 209
BanI GGYRCC 3 cut(s) 338, 451, 483
BanII GRGCYC 2 cut(s) 541, 1018
BbsI GAAGAC 2 cut(s) 18, 1043
Bbv12I GWGCWC 4 cut(s) 405, 541, 699, 1018
BbvCI CCTCAGC 1 cut(s) 741
BbvI GCAGC 3 cut(s) 505, 619, 620
BccI CCATC 4 cut(s) 374, 491, 592, 683
BceAI ACGGC 1 cut(s) 715
BciT130I CCWGG 6 cut(s) 192, 315, 426, 613, 816, 906
BciVI GTATCC 1 cut(s) 797
BcnI CCSGG 1 cut(s) 845
BcoDI GTCTC 4 cut(s) 94, 337, 350, 623
BfaI CTAG 3 cut(s) 260, 458, 1192
BfuI GTATCC 1 cut(s) 797
BglII AGATCT 1 cut(s) 678
BisI GCNGC 4 cut(s) 519, 609, 633, 1071
BlsI GCNGC 4 cut(s) 520, 610, 634, 1072
Bme1390I CCNGG 7 cut(s) 192, 315, 426, 613, 816, 845, 906
Bme18I GGWCC 3 cut(s) 581, 658, 711
BmgT120I GGNCC 3 cut(s) 581, 658, 711
BmiI GGNNCC 5 cut(s) 340, 453, 466, 485, 660
BmrFI CCNGG 7 cut(s) 192, 315, 426, 613, 816, 845, 906
BmsI GCATC 5 cut(s) 14, 20, 95, 194, 426
BpiI GAAGAC 2 cut(s) 18, 1043
BpmI CTGGAG 3 cut(s) 15, 837, 1004
Bpu10I CCTNAGC 2 cut(s) 741, 1074
Bpu14I TTCGAA 1 cut(s) 717
BpuEI CTTGAG 5 cut(s) 5, 627, 711, 779, 854
BpuMI CCSGG 1 cut(s) 845
BsaAI YACGTR 1 cut(s) 1186
BsaI GGTCTC 1 cut(s) 623
BsaWI WCCGGW 1 cut(s) 1133
Bsc4I CCNNNNNNNGG 5 cut(s) 197, 320, 461, 850, 1099
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 972
BseBI CCWGG 6 cut(s) 192, 315, 426, 613, 816, 906
BseGI GGATG 5 cut(s) 92, 185, 220, 403, 584
BseLI CCNNNNNNNGG 5 cut(s) 197, 320, 461, 850, 1099
BseMI GCAATG 1 cut(s) 972
BseMII CTCAG 7 cut(s) 39, 261, 732, 813, 927, 1088, 1130
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 5 cut(s) 62, 368, 782, 866, 1166
BseSI GKGCMC 1 cut(s) 456
BseXI GCAGC 3 cut(s) 505, 619, 620
BseYI CCCAGC 1 cut(s) 895
BshFI GGCC 7 cut(s) 63, 195, 209, 318, 1050, 1070, 1103
BshNI GGYRCC 3 cut(s) 338, 451, 483
BsiHKAI GWGCWC 4 cut(s) 405, 541, 699, 1018
BsiSI CCGG 2 cut(s) 845, 1134
BslFI GGGAC 4 cut(s) 296, 407, 644, 887
BslI CCNNNNNNNGG 5 cut(s) 197, 320, 461, 850, 1099
BsmAI GTCTC 4 cut(s) 94, 337, 350, 623
BsmBI CGTCTC 1 cut(s) 337
BsmFI GGGAC 4 cut(s) 296, 407, 644, 887
BsmI GAATGC 2 cut(s) 570, 967
BsnI GGCC 7 cut(s) 63, 195, 209, 318, 1050, 1070, 1103
Bso31I GGTCTC 1 cut(s) 623
Bsp119I TTCGAA 1 cut(s) 717
Bsp1286I GDGCHC 5 cut(s) 405, 456, 541, 699, 1018
Bsp143I GATC 2 cut(s) 429, 678
Bsp19I CCATGG 2 cut(s) 196, 210
BspACI CCGC 6 cut(s) 76, 117, 171, 280, 588, 1071
BspANI GGCC 7 cut(s) 63, 195, 209, 318, 1050, 1070, 1103
BspCNI CTCAG 7 cut(s) 40, 262, 733, 814, 928, 1087, 1129
BspLI GGNNCC 5 cut(s) 340, 453, 466, 485, 660
BspPI GGATC 1 cut(s) 437
BspT104I TTCGAA 1 cut(s) 717
BspT107I GGYRCC 3 cut(s) 338, 451, 483
BspTNI GGTCTC 1 cut(s) 623
BsrBI CCGCTC 2 cut(s) 590, 1073
BsrDI GCAATG 1 cut(s) 972
BsrI ACTGG 1 cut(s) 32
BssMI GATC 2 cut(s) 429, 678
BssT1I CCWWGG 5 cut(s) 196, 210, 319, 487, 1098
Bst2UI CCWGG 6 cut(s) 192, 315, 426, 613, 816, 906
Bst4CI ACNGT 4 cut(s) 181, 293, 376, 562
BstBAI YACGTR 1 cut(s) 1186
BstBI TTCGAA 1 cut(s) 717
BstC8I GCNNGC 3 cut(s) 80, 239, 625
BstDEI CTNAG 7 cut(s) 48, 270, 741, 822, 936, 1074, 1116
BstDSI CCRYGG 3 cut(s) 196, 210, 986
BstF5I GGATG 5 cut(s) 92, 185, 220, 403, 584
BstKTI GATC 2 cut(s) 432, 681
BstMAI GTCTC 4 cut(s) 94, 337, 350, 623
BstMBI GATC 2 cut(s) 429, 678
BstMWI GCNNNNNNNGC 6 cut(s) 149, 409, 545, 629, 737, 1079
BstNI CCWGG 6 cut(s) 192, 315, 426, 613, 816, 906
BstNSI RCATGY 1 cut(s) 995
BstSCI CCNGG 7 cut(s) 190, 313, 424, 611, 814, 843, 904
BstSLI GKGCMC 1 cut(s) 456
BstV1I GCAGC 3 cut(s) 505, 619, 620
BstV2I GAAGAC 2 cut(s) 18, 1043
BstX2I RGATCY 1 cut(s) 678
BstXI CCANNNNNNTGG 1 cut(s) 987
BstYI RGATCY 1 cut(s) 678
BsuI GTATCC 1 cut(s) 797
BsuRI GGCC 7 cut(s) 63, 195, 209, 318, 1050, 1070, 1103
BtgI CCRYGG 3 cut(s) 196, 210, 986
BtsCI GGATG 5 cut(s) 92, 185, 220, 403, 584
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 3 cut(s) 267, 372, 738
Cac8I GCNNGC 3 cut(s) 80, 239, 625
CaiI CAGNNNCTG 2 cut(s) 314, 905
Cfr13I GGNCC 3 cut(s) 581, 658, 711
CseI GACGC 1 cut(s) 230
Csp6I GTAC 4 cut(s) 294, 558, 1129, 1189
CspCI CAANNNNNGTGG 2 cut(s) 716, 751
CviAII CATG 6 cut(s) 197, 211, 480, 913, 992, 1041
CviQI GTAC 4 cut(s) 294, 558, 1129, 1189
DdeI CTNAG 7 cut(s) 48, 270, 741, 822, 936, 1074, 1116
DpnI GATC 2 cut(s) 431, 680
DpnII GATC 2 cut(s) 429, 678
EaeI YGGCCR 2 cut(s) 193, 207
EciI GGCGGA 1 cut(s) 65
Ecl136II GAGCTC 2 cut(s) 539, 1016
Eco130I CCWWGG 5 cut(s) 196, 210, 319, 487, 1098
Eco24I GRGCYC 2 cut(s) 541, 1018
Eco31I GGTCTC 1 cut(s) 623
Eco47I GGWCC 3 cut(s) 581, 658, 711
Eco53kI GAGCTC 2 cut(s) 539, 1016
Eco57I CTGAAG 1 cut(s) 1055
EcoICRI GAGCTC 2 cut(s) 539, 1016
EcoO109I RGGNCCY 1 cut(s) 711
EcoRI GAATTC 1 cut(s) 888
EcoRII CCWGG 6 cut(s) 190, 313, 424, 611, 814, 904
EcoT14I CCWWGG 5 cut(s) 196, 210, 319, 487, 1098
EcoT38I GRGCYC 2 cut(s) 541, 1018
ErhI CCWWGG 5 cut(s) 196, 210, 319, 487, 1098
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 6 cut(s) 200, 214, 483, 916, 995, 1044
FaqI GGGAC 4 cut(s) 296, 407, 644, 887
FatI CATG 6 cut(s) 196, 210, 479, 912, 991, 1040
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 519, 609, 633, 1071
FokI GGATG 5 cut(s) 79, 172, 227, 410, 571
FriOI GRGCYC 2 cut(s) 541, 1018
Fsp4HI GCNGC 4 cut(s) 519, 609, 633, 1071
FspBI CTAG 3 cut(s) 260, 458, 1192
GluI GCNGC 4 cut(s) 519, 609, 633, 1071
GsaI CCCAGC 1 cut(s) 899
GsuI CTGGAG 3 cut(s) 15, 837, 1004
HaeIII GGCC 7 cut(s) 63, 195, 209, 318, 1050, 1070, 1103
HapII CCGG 2 cut(s) 845, 1134
HgaI GACGC 1 cut(s) 230
Hin1II CATG 6 cut(s) 200, 214, 483, 916, 995, 1044
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 5 cut(s) 218, 358, 476, 909, 1145
HpaII CCGG 2 cut(s) 845, 1134
HphI GGTGA 3 cut(s) 67, 704, 969
Hpy166II GTNNAC 4 cut(s) 439, 929, 1131, 1189
Hpy188I TCNGA 5 cut(s) 49, 104, 937, 1124, 1150
Hpy188III TCNNGA 6 cut(s) 38, 166, 494, 644, 1021, 1076
Hpy8I GTNNAC 4 cut(s) 439, 929, 1131, 1189
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 4 cut(s) 93, 724, 1060, 1133
HpyCH4III ACNGT 4 cut(s) 181, 293, 376, 562
HpyCH4IV ACGT 3 cut(s) 330, 1062, 1185
HpyCH4V TGCA 6 cut(s) 11, 185, 227, 596, 828, 965
HpyF10VI GCNNNNNNNGC 6 cut(s) 149, 409, 545, 629, 737, 1079
HpyF3I CTNAG 7 cut(s) 48, 270, 741, 822, 936, 1074, 1116
HpySE526I ACGT 3 cut(s) 330, 1062, 1185
Hsp92II CATG 6 cut(s) 200, 214, 483, 916, 995, 1044
Kzo9I GATC 2 cut(s) 429, 678
LmnI GCTCC 3 cut(s) 536, 818, 879
Lsp1109I GCAGC 3 cut(s) 505, 619, 620
LweI GCATC 5 cut(s) 14, 20, 95, 194, 426
MaeI CTAG 3 cut(s) 260, 458, 1192
MaeII ACGT 3 cut(s) 330, 1062, 1185
MaeIII GTNAC 1 cut(s) 808
MalI GATC 2 cut(s) 431, 680
MbiI CCGCTC 2 cut(s) 590, 1073
MboI GATC 2 cut(s) 429, 678
MboII GAAGA 4 cut(s) 18, 400, 742, 1048
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 678
MhlI GDGCHC 5 cut(s) 405, 456, 541, 699, 1018
MlsI TGGCCA 2 cut(s) 195, 209
MluCI AATT 4 cut(s) 201, 252, 888, 1166
MluNI TGGCCA 2 cut(s) 195, 209
MlyI GAGTC 3 cut(s) 352, 485, 1154
MmeI TCCRAC 1 cut(s) 492
Mox20I TGGCCA 2 cut(s) 195, 209
MscI TGGCCA 2 cut(s) 195, 209
Msp20I TGGCCA 2 cut(s) 195, 209
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 2 cut(s) 845, 1134
MspR9I CCNGG 7 cut(s) 192, 315, 426, 613, 816, 845, 906
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 2 cut(s) 570, 967
MvaI CCWGG 6 cut(s) 192, 315, 426, 613, 816, 906
MwoI GCNNNNNNNGC 6 cut(s) 149, 409, 545, 629, 737, 1079
NciI CCSGG 1 cut(s) 845
NcoI CCATGG 2 cut(s) 196, 210
NdeI CATATG 1 cut(s) 148
NdeII GATC 2 cut(s) 429, 678
NlaIII CATG 6 cut(s) 200, 214, 483, 916, 995, 1044
NlaIV GGNNCC 5 cut(s) 340, 453, 466, 485, 660
NspI RCATGY 1 cut(s) 995
NspV TTCGAA 1 cut(s) 717
PasI CCCWGGG 1 cut(s) 425
PctI GAATGC 2 cut(s) 570, 967
PfeI GAWTC 2 cut(s) 218, 909
PfoI TCCNGGA 1 cut(s) 814
PkrI GCNGC 4 cut(s) 520, 610, 634, 1072
PleI GAGTC 3 cut(s) 352, 484, 1153
PpsI GAGTC 3 cut(s) 352, 484, 1153
Ppu21I YACGTR 1 cut(s) 1186
PpuMI RGGWCCY 1 cut(s) 711
Psp124BI GAGCTC 2 cut(s) 541, 1018
Psp5II RGGWCCY 1 cut(s) 711
Psp6I CCWGG 6 cut(s) 190, 313, 424, 611, 814, 904
PspFI CCCAGC 1 cut(s) 895
PspGI CCWGG 6 cut(s) 190, 313, 424, 611, 814, 904
PspN4I GGNNCC 5 cut(s) 340, 453, 466, 485, 660
PspPI GGNCC 3 cut(s) 581, 658, 711
PspPPI RGGWCCY 1 cut(s) 711
PstNI CAGNNNCTG 2 cut(s) 314, 905
PsuI RGATCY 1 cut(s) 678
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 4 cut(s) 295, 559, 1130, 1190
RsaNI GTAC 4 cut(s) 294, 558, 1129, 1189
SacI GAGCTC 2 cut(s) 541, 1018
SatI GCNGC 4 cut(s) 519, 609, 633, 1071
Sau3AI GATC 2 cut(s) 429, 678
Sau96I GGNCC 3 cut(s) 581, 658, 711
SchI GAGTC 3 cut(s) 352, 485, 1154
ScrFI CCNGG 7 cut(s) 192, 315, 426, 613, 816, 845, 906
SduI GDGCHC 5 cut(s) 405, 456, 541, 699, 1018
SfaNI GCATC 5 cut(s) 14, 20, 95, 194, 426
SfuI TTCGAA 1 cut(s) 717
SinI GGWCC 3 cut(s) 581, 658, 711
SmlI CTYRAG 5 cut(s) 20, 642, 726, 794, 869
SmoI CTYRAG 5 cut(s) 20, 642, 726, 794, 869
Sse9I AATT 4 cut(s) 201, 252, 888, 1166
SsiI CCGC 6 cut(s) 76, 117, 171, 280, 588, 1071
SspMI CTAG 3 cut(s) 260, 458, 1192
SstI GAGCTC 2 cut(s) 541, 1018
StyD4I CCNGG 7 cut(s) 190, 313, 424, 611, 814, 843, 904
StyI CCWWGG 5 cut(s) 196, 210, 319, 487, 1098
TaaI ACNGT 4 cut(s) 181, 293, 376, 562
TaiI ACGT 3 cut(s) 333, 1065, 1188
TaqI TCGA 2 cut(s) 351, 717
TasI AATT 4 cut(s) 201, 252, 888, 1166
TatI WGTACW 2 cut(s) 1128, 1188
TauI GCSGC 1 cut(s) 1073
TfiI GAWTC 2 cut(s) 218, 909
TscAI CASTG 3 cut(s) 274, 379, 738
TseI GCWGC 3 cut(s) 518, 608, 632
TspDTI ATGAA 4 cut(s) 135, 171, 231, 983
TspGWI ACGGA 2 cut(s) 85, 1082
TspRI CASTG 3 cut(s) 274, 379, 738
VpaK11BI GGWCC 3 cut(s) 581, 658, 711
XapI RAATTY 2 cut(s) 201, 888
XceI RCATGY 1 cut(s) 995
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XspI CTAG 3 cut(s) 260, 458, 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.