Rh6CG263000

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010302
Physical Location & Seq
Reverse (-)
43595195 .. 43598626
3432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG263000.1

Sequence Viewer

Length: 684 bp
ATGGCGGAGCCGAATTGGAAAGGATATTGGCGGGTTAGTGATGTGGATGAACAACCATCTACGAGCAAAGATGAGGATATGATAGAGAGTTCAAATGGGAAAGAGGCAGCCACATTTGAGGGGAGTTCAGATATGGAACCGTATGTGGGTATGGAGTTTGAAACGGAAGAGGCTGCCAAGGTGTTCTATGATGCATATGCAACACAATTGGGATTCATTATGCGGGTTGATGCCTTTCGGAGATCATTGCGTGATGGTAAGGTAGTTTGGCGTAGACTTGTGTGTAATAAAGAGGGATTTCGTAAGACGAGGCCCAAAAGAAGTGAGAACAGGAAGCCTCGGGCAATCACGAGAGAAGGGTGTAAAGCAATGATAGTGGTAAAGAGAGAAAAATCAGGAAAATGGATTGTAACGAGATTTATAAAGGACCATAACCATTCACTGGTAGTTACACCTGCAAATGGTCGCCGGACTGTGATTCTATCTCAAACACCAGATGAAAAAGATATGAAAATTCGAGAGTTGACTGCTGAGCTACAGCGTGAGCGAAAGAGATCTGCAGCTTATCAAGAACAGCTTGACATGGTTTTGAGGGAGATGGAAGAGCATTCCAATCACCTCTCGAGAAACATTGCCGATATAGTTCAGAGTGTGAAAGAGATTGAATCAAAGAGGATAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

227

Amino Acids

26.42

Weight (kDa)

9.13

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 62 - 149 2.4e-32 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
AarI CACCTGC 1 cut(s) 463
Acc36I ACCTGC 1 cut(s) 463
AccB7I CCANNNNNTGG 1 cut(s) 442
AccI GTMKAC 1 cut(s) 274
AciI CCGC 3 cut(s) 5, 31, 223
AcsI RAATTY 1 cut(s) 513
AfiI CCNNNNNNNGG 3 cut(s) 146, 442, 461
AgsI TTSAA 3 cut(s) 93, 161, 665
AluBI AGCT 3 cut(s) 535, 563, 577
AluI AGCT 3 cut(s) 535, 563, 577
Ama87I CYCGRG 2 cut(s) 339, 622
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 3 cut(s) 107, 173, 560
ApoI RAATTY 1 cut(s) 513
AspS9I GGNCC 2 cut(s) 312, 427
AsuHPI GGTGA 1 cut(s) 608
AvaI CYCGRG 2 cut(s) 339, 622
AvaII GGWCC 1 cut(s) 427
BauI CACGAG 1 cut(s) 349
BbvI GCAGC 3 cut(s) 119, 160, 572
BccI CCATC 3 cut(s) 64, 248, 592
BfaI CTAG 1 cut(s) 682
BfmI CTRYAG 2 cut(s) 536, 558
BfuAI ACCTGC 1 cut(s) 463
BglII AGATCT 1 cut(s) 554
BisI GCNGC 3 cut(s) 108, 174, 561
BlpI GCTNAGC 1 cut(s) 531
BlsI GCNGC 3 cut(s) 109, 175, 562
Bme18I GGWCC 1 cut(s) 427
BmeT110I CYCGRG 2 cut(s) 339, 622
BmgT120I GGNCC 2 cut(s) 312, 427
BmiI GGNNCC 2 cut(s) 9, 138
BmsI GCATC 2 cut(s) 181, 220
Bpu1102I GCTNAGC 1 cut(s) 531
BsaJI CCNNGG 2 cut(s) 177, 338
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 442, 461
Bse1I ACTGG 1 cut(s) 447
Bse3DI GCAATG 3 cut(s) 245, 375, 630
BseDI CCNNGG 2 cut(s) 177, 338
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 3 cut(s) 146, 442, 461
BseMI GCAATG 3 cut(s) 245, 375, 630
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 1 cut(s) 447
BseXI GCAGC 3 cut(s) 119, 160, 572
BshFI GGCC 1 cut(s) 313
BsiHKCI CYCGRG 2 cut(s) 339, 622
BsiSI CCGG 1 cut(s) 469
BslI CCNNNNNNNGG 3 cut(s) 146, 442, 461
BsmI GAATGC 1 cut(s) 607
BsnI GGCC 1 cut(s) 313
BsoBI CYCGRG 2 cut(s) 339, 622
Bsp143I GATC 2 cut(s) 242, 554
Bsp1720I GCTNAGC 1 cut(s) 531
BspACI CCGC 3 cut(s) 5, 31, 223
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 9, 138
BspMAI CTGCAG 1 cut(s) 562
BspMI ACCTGC 1 cut(s) 463
BspQI GCTCTTC 1 cut(s) 597
BsrDI GCAATG 3 cut(s) 245, 375, 630
BsrI ACTGG 1 cut(s) 447
BssECI CCNNGG 2 cut(s) 177, 338
BssMI GATC 2 cut(s) 242, 554
BssSI CACGAG 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 349
Bst4CI ACNGT 2 cut(s) 141, 475
Bst6I CTCTTC 2 cut(s) 162, 597
BstDEI CTNAG 1 cut(s) 531
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 2 cut(s) 245, 557
BstMBI GATC 2 cut(s) 242, 554
BstSFI CTRYAG 2 cut(s) 536, 558
BstV1I GCAGC 3 cut(s) 119, 160, 572
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
BsuRI GGCC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 440
BveI ACCTGC 1 cut(s) 463
Cfr13I GGNCC 2 cut(s) 312, 427
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 1 cut(s) 583
CviJI RGCY 9 cut(s) 10, 110, 173, 313, 337, 535, 563, 577, 680
CviKI_1 RGCY 9 cut(s) 10, 110, 173, 313, 337, 535, 563, 577, 680
DdeI CTNAG 1 cut(s) 531
DpnI GATC 2 cut(s) 244, 556
DpnII GATC 2 cut(s) 242, 554
Eam1104I CTCTTC 2 cut(s) 162, 597
EarI CTCTTC 2 cut(s) 162, 597
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 427
Eco88I CYCGRG 2 cut(s) 339, 622
EcoT14I CCWWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 1 cut(s) 586
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FatI CATG 1 cut(s) 582
FauI CCCGC 2 cut(s) 24, 216
FauNDI CATATG 1 cut(s) 196
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 108, 174, 561
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 3 cut(s) 108, 174, 561
FspBI CTAG 1 cut(s) 682
GluI GCNGC 3 cut(s) 108, 174, 561
HaeIII GGCC 1 cut(s) 313
HapII CCGG 1 cut(s) 469
Hin1II CATG 1 cut(s) 586
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HinfI GANTC 3 cut(s) 213, 478, 665
HpaII CCGG 1 cut(s) 469
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 2 cut(s) 275, 525
Hpy188I TCNGA 3 cut(s) 130, 240, 648
Hpy188III TCNNGA 6 cut(s) 349, 396, 518, 569, 622, 624
Hpy8I GTNNAC 2 cut(s) 275, 525
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 2 cut(s) 141, 475
HpyCH4V TGCA 4 cut(s) 194, 200, 458, 560
HpyF3I CTNAG 1 cut(s) 531
Hsp92II CATG 1 cut(s) 586
Kzo9I GATC 2 cut(s) 242, 554
LguI GCTCTTC 1 cut(s) 597
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 6 cut(s) 316, 381, 428, 468, 482, 507
Lsp1109I GCAGC 3 cut(s) 119, 160, 572
LweI GCATC 2 cut(s) 181, 220
MaeI CTAG 1 cut(s) 682
MaeIII GTNAC 2 cut(s) 409, 448
MalI GATC 2 cut(s) 244, 556
MboI GATC 2 cut(s) 242, 554
MboII GAAGA 2 cut(s) 179, 614
MfeI CAATTG 1 cut(s) 206
MflI RGATCY 1 cut(s) 554
MluCI AATT 3 cut(s) 13, 206, 513
Mph1103I ATGCAT 1 cut(s) 196
MspI CCGG 1 cut(s) 469
MunI CAATTG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 607
NdeI CATATG 1 cut(s) 196
NdeII GATC 2 cut(s) 242, 554
NlaIII CATG 1 cut(s) 586
NlaIV GGNNCC 2 cut(s) 9, 138
NsiI ATGCAT 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 622
PaqCI CACCTGC 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 597
PctI GAATGC 1 cut(s) 607
PfeI GAWTC 3 cut(s) 213, 478, 665
PflMI CCANNNNNTGG 1 cut(s) 442
PkrI GCNGC 3 cut(s) 109, 175, 562
PsiI TTATAA 1 cut(s) 422
PspN4I GGNNCC 2 cut(s) 9, 138
PspPI GGNCC 2 cut(s) 312, 427
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 1 cut(s) 554
SapI GCTCTTC 1 cut(s) 597
SatI GCNGC 3 cut(s) 108, 174, 561
Sau3AI GATC 2 cut(s) 242, 554
Sau96I GGNCC 2 cut(s) 312, 427
SetI ASST 7 cut(s) 183, 264, 457, 537, 565, 579, 621
SfaNI GCATC 2 cut(s) 181, 220
SfcI CTRYAG 2 cut(s) 536, 558
Sfr274I CTCGAG 1 cut(s) 622
SinI GGWCC 1 cut(s) 427
SlaI CTCGAG 1 cut(s) 622
SmlI CTYRAG 1 cut(s) 622
SmoI CTYRAG 1 cut(s) 622
Sse9I AATT 3 cut(s) 13, 206, 513
SsiI CCGC 3 cut(s) 5, 31, 223
SspMI CTAG 1 cut(s) 682
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 141, 475
TaqI TCGA 2 cut(s) 517, 623
TasI AATT 3 cut(s) 13, 206, 513
TfiI GAWTC 3 cut(s) 213, 478, 665
TscAI CASTG 1 cut(s) 447
TseI GCWGC 3 cut(s) 107, 173, 560
TspDTI ATGAA 4 cut(s) 63, 205, 513, 524
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 1 cut(s) 447
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 427
XapI RAATTY 1 cut(s) 513
XhoI CTCGAG 1 cut(s) 622
XmiI GTMKAC 1 cut(s) 274
XspI CTAG 1 cut(s) 682
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.