Rh6DG254900

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010302
Physical Location & Seq
Reverse (-)
44540044 .. 44542391
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG254900.1

Sequence Viewer

Length: 657 bp
ATGAAATTGGTTCTTCTGGATGAACAACCATCTACGAGCAAAGATGAAGATATGATAGAGAGTTCAAATGGGAAAGAGGCAGCCACATTTGAGGGGAGTTCAGATATGGAACCGTATGTGGGTATGGAGTTTGAAACGGAAGAGGCTGCCAAGGTGTTCTATGATGCATATGCAACACAGTTGGGATTCATTATGCGGGTTGATGCCTTTCGGAGATCATTGCGTGATGGTAAGGTAGTTTGGCGTAGACTTGTGTGCAATAAAGAAGGATTTCGTAAGACGAGGCCCAAAAGAAGTGAGAACAGGAAGCCTCGGGCAATCACAAGAGAAGGGTGTAAAGCAATGATAGTGGTAAAGAGAGAAAAATCAGGAAAATGGATTGTAACGAGATTTATAAAGGACCATAACCATTCACTGGTAGTTACACCTGCAAATGGTCGCCGGACTGTGATTCTATCTCAAACACCAGATGAAAAAGATATGAAAATTCGAGAGTTGACTGCTGAGCTACAGCGTGAGCGAAAGAGATCTGCAGCTTATCAAGAACAGCTTGACATGGTTTTGAGGGAGATGGAAGAGCATTCCAATCACCTCTCGAGAAACATTGCTGATATAGTTCAGAGTGTGAAAGAGATTGAATCAAAGAGGATAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

218

Amino Acids

25.29

Weight (kDa)

9.28

Isoelectric Point (pI)

57.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 53 - 140 2.2e-32 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 395
AarI CACCTGC 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 436
AccB7I CCANNNNNTGG 1 cut(s) 415
AccI GTMKAC 1 cut(s) 247
AciI CCGC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 486
AfiI CCNNNNNNNGG 3 cut(s) 119, 415, 434
AgsI TTSAA 3 cut(s) 66, 134, 638
AluBI AGCT 3 cut(s) 508, 536, 550
AluI AGCT 3 cut(s) 508, 536, 550
Ama87I CYCGRG 2 cut(s) 312, 595
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 3 cut(s) 80, 146, 533
ApoI RAATTY 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 270
AspS9I GGNCC 2 cut(s) 285, 400
AsuHPI GGTGA 1 cut(s) 581
AvaI CYCGRG 2 cut(s) 312, 595
AvaII GGWCC 1 cut(s) 400
BbvI GCAGC 3 cut(s) 92, 133, 545
BccI CCATC 3 cut(s) 37, 221, 565
BfaI CTAG 1 cut(s) 655
BfmI CTRYAG 2 cut(s) 509, 531
BfuAI ACCTGC 1 cut(s) 436
BglII AGATCT 1 cut(s) 527
BisI GCNGC 3 cut(s) 81, 147, 534
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 3 cut(s) 82, 148, 535
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 2 cut(s) 312, 595
BmgT120I GGNCC 2 cut(s) 285, 400
BmiI GGNNCC 1 cut(s) 111
BmsI GCATC 2 cut(s) 154, 193
Bpu1102I GCTNAGC 1 cut(s) 504
BsaJI CCNNGG 2 cut(s) 150, 311
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 415, 434
Bse1I ACTGG 1 cut(s) 420
Bse3DI GCAATG 3 cut(s) 218, 348, 603
BseDI CCNNGG 2 cut(s) 150, 311
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 3 cut(s) 119, 415, 434
BseMI GCAATG 3 cut(s) 218, 348, 603
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 420
BseXI GCAGC 3 cut(s) 92, 133, 545
BshFI GGCC 1 cut(s) 286
BsiHKCI CYCGRG 2 cut(s) 312, 595
BsiSI CCGG 1 cut(s) 442
BslI CCNNNNNNNGG 3 cut(s) 119, 415, 434
BsmI GAATGC 1 cut(s) 580
BsnI GGCC 1 cut(s) 286
BsoBI CYCGRG 2 cut(s) 312, 595
Bsp143I GATC 2 cut(s) 215, 527
Bsp1720I GCTNAGC 1 cut(s) 504
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 496
BspLI GGNNCC 1 cut(s) 111
BspMAI CTGCAG 1 cut(s) 535
BspMI ACCTGC 1 cut(s) 436
BspQI GCTCTTC 1 cut(s) 570
BsrDI GCAATG 3 cut(s) 218, 348, 603
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 2 cut(s) 150, 311
BssMI GATC 2 cut(s) 215, 527
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 3 cut(s) 114, 180, 448
Bst6I CTCTTC 2 cut(s) 135, 570
BstDEI CTNAG 1 cut(s) 504
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 2 cut(s) 218, 530
BstMBI GATC 2 cut(s) 215, 527
BstSFI CTRYAG 2 cut(s) 509, 531
BstV1I GCAGC 3 cut(s) 92, 133, 545
BstX2I RGATCY 1 cut(s) 527
BstYI RGATCY 1 cut(s) 527
BsuRI GGCC 1 cut(s) 286
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 413
BveI ACCTGC 1 cut(s) 436
Cfr13I GGNCC 2 cut(s) 285, 400
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 1 cut(s) 556
CviJI RGCY 8 cut(s) 83, 146, 286, 310, 508, 536, 550, 653
CviKI_1 RGCY 8 cut(s) 83, 146, 286, 310, 508, 536, 550, 653
DdeI CTNAG 1 cut(s) 504
DpnI GATC 2 cut(s) 217, 529
DpnII GATC 2 cut(s) 215, 527
Eam1104I CTCTTC 2 cut(s) 135, 570
EarI CTCTTC 2 cut(s) 135, 570
Eco130I CCWWGG 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 400
Eco88I CYCGRG 2 cut(s) 312, 595
EcoT14I CCWWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 559
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FatI CATG 1 cut(s) 555
FauI CCCGC 1 cut(s) 189
FauNDI CATATG 1 cut(s) 169
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 81, 147, 534
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 3 cut(s) 81, 147, 534
FspBI CTAG 1 cut(s) 655
GluI GCNGC 3 cut(s) 81, 147, 534
HaeIII GGCC 1 cut(s) 286
HapII CCGG 1 cut(s) 442
Hin1II CATG 1 cut(s) 559
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HinfI GANTC 3 cut(s) 186, 451, 638
HpaII CCGG 1 cut(s) 442
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 2 cut(s) 248, 498
Hpy188I TCNGA 3 cut(s) 103, 213, 621
Hpy188III TCNNGA 6 cut(s) 17, 369, 491, 542, 595, 597
Hpy8I GTNNAC 2 cut(s) 248, 498
HpyAV CCTTC 2 cut(s) 260, 323
HpyCH4III ACNGT 3 cut(s) 114, 180, 448
HpyCH4V TGCA 5 cut(s) 167, 173, 258, 431, 533
HpyF3I CTNAG 1 cut(s) 504
Hsp92II CATG 1 cut(s) 559
Kzo9I GATC 2 cut(s) 215, 527
LguI GCTCTTC 1 cut(s) 570
LpnPI CCDG 7 cut(s) 2, 289, 354, 401, 441, 455, 480
Lsp1109I GCAGC 3 cut(s) 92, 133, 545
LweI GCATC 2 cut(s) 154, 193
MaeI CTAG 1 cut(s) 655
MaeIII GTNAC 2 cut(s) 382, 421
MalI GATC 2 cut(s) 217, 529
MboI GATC 2 cut(s) 215, 527
MboII GAAGA 4 cut(s) 5, 59, 152, 587
MflI RGATCY 1 cut(s) 527
MluCI AATT 2 cut(s) 5, 486
MnlI CCTC 8 cut(s) 70, 85, 136, 276, 321, 558, 602, 639
Mph1103I ATGCAT 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 270
MspI CCGG 1 cut(s) 442
Mva1269I GAATGC 1 cut(s) 580
NdeI CATATG 1 cut(s) 169
NdeII GATC 2 cut(s) 215, 527
NlaIII CATG 1 cut(s) 559
NlaIV GGNNCC 1 cut(s) 111
NsiI ATGCAT 1 cut(s) 169
PaeR7I CTCGAG 1 cut(s) 595
PaqCI CACCTGC 1 cut(s) 436
PciSI GCTCTTC 1 cut(s) 570
PctI GAATGC 1 cut(s) 580
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 3 cut(s) 186, 451, 638
PflMI CCANNNNNTGG 1 cut(s) 415
PkrI GCNGC 3 cut(s) 82, 148, 535
PsiI TTATAA 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 2 cut(s) 285, 400
PstI CTGCAG 1 cut(s) 535
PsuI RGATCY 1 cut(s) 527
SapI GCTCTTC 1 cut(s) 570
SatI GCNGC 3 cut(s) 81, 147, 534
Sau3AI GATC 2 cut(s) 215, 527
Sau96I GGNCC 2 cut(s) 285, 400
SetI ASST 7 cut(s) 156, 237, 430, 510, 538, 552, 594
SfaNI GCATC 2 cut(s) 154, 193
SfcI CTRYAG 2 cut(s) 509, 531
Sfr274I CTCGAG 1 cut(s) 595
SinI GGWCC 1 cut(s) 400
SlaI CTCGAG 1 cut(s) 595
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
Sse9I AATT 2 cut(s) 5, 486
SsiI CCGC 1 cut(s) 196
SspMI CTAG 1 cut(s) 655
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 3 cut(s) 114, 180, 448
TaqI TCGA 2 cut(s) 490, 596
TasI AATT 2 cut(s) 5, 486
TfiI GAWTC 3 cut(s) 186, 451, 638
TscAI CASTG 1 cut(s) 420
TseI GCWGC 3 cut(s) 80, 146, 533
TspDTI ATGAA 6 cut(s) 17, 36, 60, 178, 486, 497
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 1 cut(s) 420
Van91I CCANNNNNTGG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 1 cut(s) 486
XhoI CTCGAG 1 cut(s) 595
XmiI GTMKAC 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 655
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.