Rorug06G0147500

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010302
Physical Location & Seq
Forward (+)
21155172 .. 21157349
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0147500.1

Sequence Viewer

Length: 729 bp
ATGGCAGAAGCTATGGACACTGGAGATGAAGTTATGGAAAACACTATTCCTTCTCTCATTAAAGATTCCCTCGAGTCTACTCAGAAAGGCAAGGTAGGTTCTCCAGAAGACATTGCTTGGGTTGATTCCTGCCTGATTAAGGAATCTGATATTTCAGATGATAATTGGAATTCTCTGAAAGCTGCACTAGTAGAAATCCTCGATTCTCATCCTGAATCACTCGGCTCTTCTTCAGGGATAAGTAATGAATTACATGGGGAAACAGACATTGAGATTCATCCTTCTAGTGAGGAGACAGAACCAAATCGCTTCTCTATTAGGGAAGAATTGGAGACATTAGATGATGATGTTCAAACCAATGACGATATTCCAATTAGCAAGAAGGCCTATGATTTGCAGTCATTTACTTTTGAGGGAAATCCCTTCTTGCCTGGTTACAAGGATGAGTTGGGAGTGACTGAAAACCTTGAGTTAGGAGTCAATAAGGATTCTTGGGCACCTGAGATCGAGCCTTCAACTGAGGATATATTCAGGGTTTGGAATTTGGAAGTTCCAGAAGAAGAAGATGAACTTGTGAAGCAGTTGAACAACGCCCTTGAAGAAGTATTGCCTCAATCCTTACCATCAAGTTTTGCTGATTCCGATGCACATAAAAATTTGGAAGAAACTTCAGTTGATGATCTGATTGCTGGGATTGCCGACCTTTCTTTGAATCAAATTTTCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

242

Amino Acids

26.78

Weight (kDa)

4.05

Isoelectric Point (pI)

56.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 496
AccI GTMKAC 1 cut(s) 77
AcsI RAATTY 4 cut(s) 169, 541, 655, 717
AcuI CTGAAG 2 cut(s) 216, 654
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 5 cut(s) 353, 516, 586, 599, 712
AhlI ACTAGT 1 cut(s) 187
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 2 cut(s) 11, 182
AluI AGCT 2 cut(s) 11, 182
Alw26I GTCTC 2 cut(s) 287, 326
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 4 cut(s) 169, 541, 655, 717
AvaI CYCGRG 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 499
BanI GGYRCC 1 cut(s) 496
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 169
BccI CCATC 1 cut(s) 631
BciT130I CCWGG 1 cut(s) 432
BcoDI GTCTC 2 cut(s) 287, 326
BcuI ACTAGT 1 cut(s) 187
BfaI CTAG 2 cut(s) 188, 285
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 432
BmeT110I CYCGRG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 1 cut(s) 634
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 2 cut(s) 42, 87
BpuEI CTTGAG 1 cut(s) 488
BsaBI GATNNNNATC 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 1 cut(s) 432
BseGI GGATG 3 cut(s) 208, 277, 448
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 3 cut(s) 95, 492, 510
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 689
BsgI GTGCAG 1 cut(s) 168
BshFI GGCC 1 cut(s) 386
BshNI GGYRCC 1 cut(s) 496
BsiHKCI CYCGRG 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 287, 326
BsnI GGCC 1 cut(s) 386
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 2 cut(s) 504, 679
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 3 cut(s) 94, 493, 511
BspLI GGNNCC 1 cut(s) 498
BspQI GCTCTTC 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 1 cut(s) 25
BssMI GATC 2 cut(s) 504, 679
Bst2UI CCWGG 1 cut(s) 432
Bst6I CTCTTC 1 cut(s) 232
BstDEI CTNAG 3 cut(s) 81, 501, 519
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 3 cut(s) 208, 277, 448
BstKTI GATC 2 cut(s) 507, 682
BstMAI GTCTC 2 cut(s) 287, 326
BstMBI GATC 2 cut(s) 504, 679
BstMWI GCNNNNNNNGC 1 cut(s) 695
BstNI CCWGG 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 430
BstSLI GKGCMC 1 cut(s) 499
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 386
BtsCI GGATG 3 cut(s) 208, 277, 448
BtsIMutI CAGTG 1 cut(s) 18
CviAII CATG 1 cut(s) 254
CviJI RGCY 5 cut(s) 11, 182, 225, 386, 511
CviKI_1 RGCY 5 cut(s) 11, 182, 225, 386, 511
DdeI CTNAG 3 cut(s) 81, 501, 519
DpnI GATC 2 cut(s) 506, 681
DpnII GATC 2 cut(s) 504, 679
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
Eco147I AGGCCT 1 cut(s) 386
Eco57I CTGAAG 2 cut(s) 216, 654
Eco88I CYCGRG 1 cut(s) 71
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 430
FaeI CATG 1 cut(s) 257
FaiI YATR 6 cut(s) 14, 35, 255, 390, 527, 651
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FatI CATG 1 cut(s) 253
FblI GTMKAC 1 cut(s) 77
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 3 cut(s) 195, 264, 455
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 2 cut(s) 188, 285
GluI GCNGC 1 cut(s) 183
GsaI CCCAGC 1 cut(s) 693
GsuI CTGGAG 2 cut(s) 42, 87
HaeIII GGCC 1 cut(s) 386
Hin1II CATG 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 6 cut(s) 84, 148, 157, 177, 643, 684
Hpy188III TCNNGA 3 cut(s) 104, 212, 554
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 5 cut(s) 60, 291, 376, 433, 522
HpyCH4V TGCA 3 cut(s) 185, 397, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 695
HpyF3I CTNAG 3 cut(s) 81, 501, 519
Hsp92II CATG 1 cut(s) 257
Kzo9I GATC 2 cut(s) 504, 679
LguI GCTCTTC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 634
MaeI CTAG 2 cut(s) 188, 285
MaeIII GTNAC 2 cut(s) 434, 454
MalI GATC 2 cut(s) 506, 681
MboI GATC 2 cut(s) 504, 679
MboII GAAGA 9 cut(s) 119, 219, 222, 335, 569, 572, 575, 611, 674
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 8 cut(s) 163, 169, 248, 326, 372, 541, 655, 717
MlyI GAGTC 2 cut(s) 83, 486
MnlI CCTC 6 cut(s) 80, 209, 283, 406, 514, 621
MseI TTAA 2 cut(s) 60, 138
MspR9I CCNGG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 1 cut(s) 695
NdeII GATC 2 cut(s) 504, 679
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 498
NmeAIII GCCGAG 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 454
PaeR7I CTCGAG 1 cut(s) 71
PceI AGGCCT 1 cut(s) 386
PciSI GCTCTTC 1 cut(s) 232
PfeI GAWTC 9 cut(s) 65, 125, 143, 203, 215, 274, 488, 638, 712
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 2 cut(s) 82, 485
PpsI GAGTC 2 cut(s) 82, 485
Psp6I CCWGG 1 cut(s) 430
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 498
PspXI VCTCGAGB 1 cut(s) 71
SapI GCTCTTC 1 cut(s) 232
SaqAI TTAA 2 cut(s) 60, 138
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 2 cut(s) 504, 679
SchI GAGTC 2 cut(s) 83, 486
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 1 cut(s) 499
SetI ASST 7 cut(s) 13, 96, 100, 184, 468, 502, 705
SfaNI GCATC 1 cut(s) 634
Sfr274I CTCGAG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 71, 467
SmoI CTYRAG 2 cut(s) 71, 467
SpeI ACTAGT 1 cut(s) 187
Sse9I AATT 8 cut(s) 163, 169, 248, 326, 372, 541, 655, 717
SseBI AGGCCT 1 cut(s) 386
SspMI CTAG 2 cut(s) 188, 285
StuI AGGCCT 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 430
TaqI TCGA 3 cut(s) 72, 201, 507
TasI AATT 8 cut(s) 163, 169, 248, 326, 372, 541, 655, 717
TfiI GAWTC 9 cut(s) 65, 125, 143, 203, 215, 274, 488, 638, 712
Tru1I TTAA 2 cut(s) 60, 138
Tru9I TTAA 2 cut(s) 60, 138
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 4 cut(s) 42, 261, 266, 582
TspRI CASTG 1 cut(s) 25
XagI CCTNNNNNAGG 1 cut(s) 137
XapI RAATTY 4 cut(s) 169, 541, 655, 717
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 77
XspI CTAG 2 cut(s) 188, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.