Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Reverse (-)

2411321 .. 2413587

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCGTCTCAGCCTGCAGGTGGCAGTCCTCCTAAACCTTGGGAAAAAGAAGGAAATACATCTGGTCCTAATCCTTTCAGGCCTCCTTCTAATACTAGCACGGCTGGTTCAGTTGAGGCTTCTGGCACAGCTAATCCTGGTGAAGTAGTTCCTCCGCCCGTGAACAGGCCTAATACAGCTGCTAATATGAATTCACTCAGTAGGCCTGTACCGGCTAGACCTTGGGAACAGCAGAATTATGGGAGCACTATGGGGGGAGGTTATGGTTCAAATCTAGGTATGACCTCTGGGTATGGGTCAGGTACATATGGTTCAGCATTAGGTGGGTATGGTTCATCATATGGTGGTGGGATGTATGGAGGTAGTAGCATGTATAGAGGAGGTTATGGTGGTGGTGGGCTCTATGGAAGTTCAGGCATGTATGGTGGTGGTGCGATGGGTGGTTATGGTGGCACGATGGGTGGTTATGGTATGGGTATGGGAACGGGAATGGGAATGGGGATGGGAATGGGAATGGGTGGTCCTTATGGTAGTCAAGATCCAAATGACCCTTTTAATCAACCTCCATCTCCACCAGGCTTCTGGATATCATTTCTCCGTGTGATGCAAGGTGCTGTGAATTTCTTTGGCCGTGTAGCGATGCTTATAGATCAAAACACACAGGCCTTTCACATGTTCATGTCTGCCCTTCTTCAGCTATTTGATCGTGGTGGTATGTTATATGGAGAATTAGCAAGATTTGTACTGCGTATGCTTGGGGTGAGAACAAGGCCTAGAAAGATGCAGCAGCCACCACAAGGGCCTAATGGGCTACCTTTACCACACCAGCCACATGGAAACCAGAACTACCTCGAGGGGCCTAAAACTGCTGCACCAGGTGGTGGCGGTGGTTGGGACAATGTATGGGGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

31.29

Weight (kDa)

9.39

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	8
AbsI	CCTCGAGG	1 cut(s)	851
Acc36I	ACCTGC	1 cut(s)	8
AccB7I	CCANNNNNTGG	1 cut(s)	881
AciI	CCGC	2 cut(s)	155, 885
AclWI	GGATC	1 cut(s)	533
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	2 cut(s)	190, 619
AcuI	CTGAAG	1 cut(s)	677
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	878
AfaI	GTAC	3 cut(s)	210, 304, 744
AfiI	CCNNNNNNNGG	4 cut(s)	20, 165, 797, 881
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	1 cut(s)	270
AjnI	CCWGG	3 cut(s)	136, 574, 874
AluBI	AGCT	3 cut(s)	131, 179, 697
AluI	AGCT	3 cut(s)	131, 179, 697
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	8 cut(s)	80, 167, 203, 628, 663, 770, 800, 857
ApeKI	GCWGC	4 cut(s)	179, 784, 787, 869
ApoI	RAATTY	2 cut(s)	190, 619
Asp700I	GAANNNNTTC	1 cut(s)	147
AspS9I	GGNCC	4 cut(s)	65, 521, 800, 857
AsuHPI	GGTGA	2 cut(s)	152, 772
AvaI	CYCGRG	1 cut(s)	851
AvaII	GGWCC	2 cut(s)	65, 521
BanII	GRGCYC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	4 cut(s)	166, 796, 799, 856
BccI	CCATC	4 cut(s)	430, 451, 496, 574
BceAI	ACGGC	2 cut(s)	117, 615
BciT130I	CCWGG	3 cut(s)	138, 576, 876
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	4 cut(s)	96, 216, 275, 774
BfmI	CTRYAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	808
BisI	GCNGC	4 cut(s)	180, 785, 788, 870
BlsI	GCNGC	4 cut(s)	181, 786, 789, 871
Bme1390I	CCNGG	3 cut(s)	138, 576, 876
Bme18I	GGWCC	2 cut(s)	65, 521
BmeT110I	CYCGRG	1 cut(s)	851
BmgT120I	GGNCC	4 cut(s)	65, 521, 800, 857
BmiI	GGNNCC	1 cut(s)	858
BmrFI	CCNGG	3 cut(s)	138, 576, 876
BmsI	GCATC	3 cut(s)	594, 630, 771
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	38, 221
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 165, 797, 881
Bse118I	RCCGGY	1 cut(s)	211
BseBI	CCWGG	3 cut(s)	138, 576, 876
BseDI	CCNNGG	2 cut(s)	38, 221
BseGI	GGATG	2 cut(s)	357, 507
BseLI	CCNNNNNNNGG	4 cut(s)	20, 165, 797, 881
BseMII	CTCAG	2 cut(s)	23, 211
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	4 cut(s)	166, 796, 799, 856
BsgI	GTGCAG	1 cut(s)	855
BshFI	GGCC	8 cut(s)	82, 169, 205, 630, 665, 772, 802, 859
BsiHKAI	GWGCWC	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	908
BslI	CCNNNNNNNGG	4 cut(s)	20, 165, 797, 881
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	908
BsnI	GGCC	8 cut(s)	82, 169, 205, 630, 665, 772, 802, 859
BsoBI	CYCGRG	1 cut(s)	851
Bsp1286I	GDGCHC	2 cut(s)	248, 402
Bsp143I	GATC	3 cut(s)	538, 649, 703
BspACI	CCGC	2 cut(s)	155, 885
BspANI	GGCC	8 cut(s)	82, 169, 205, 630, 665, 772, 802, 859
BspCNI	CTCAG	2 cut(s)	22, 210
BspLI	GGNNCC	1 cut(s)	858
BspMAI	CTGCAG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	533
BsrFI	RCCGGY	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	38, 221
BssMI	GATC	3 cut(s)	538, 649, 703
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	38, 221
Bst2UI	CCWGG	3 cut(s)	138, 576, 876
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	9, 197
BstF5I	GGATG	2 cut(s)	357, 507
BstKTI	GATC	3 cut(s)	541, 652, 706
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	3 cut(s)	538, 649, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	808
BstNI	CCWGG	3 cut(s)	138, 576, 876
BstNSI	RCATGY	3 cut(s)	373, 421, 676
BstSCI	CCNGG	3 cut(s)	136, 574, 874
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	4 cut(s)	166, 796, 799, 856
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	2 cut(s)	582, 833
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	8 cut(s)	82, 169, 205, 630, 665, 772, 802, 859
BtgZI	GCGATG	2 cut(s)	449, 653
BtsCI	GGATG	2 cut(s)	357, 507
BveI	ACCTGC	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	15
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	4 cut(s)	65, 521, 800, 857
CsiI	ACCWGGT	1 cut(s)	874
Csp6I	GTAC	3 cut(s)	209, 303, 743
CviAII	CATG	5 cut(s)	370, 418, 673, 679, 833
CviQI	GTAC	3 cut(s)	209, 303, 743
DdeI	CTNAG	2 cut(s)	9, 197
DpnI	GATC	3 cut(s)	540, 651, 705
DpnII	GATC	3 cut(s)	538, 649, 703
DraIII	CACNNNGTG	1 cut(s)	878
EaeI	YGGCCR	1 cut(s)	628
EciI	GGCGGA	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	38, 221
Eco147I	AGGCCT	5 cut(s)	82, 169, 205, 665, 772
Eco24I	GRGCYC	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	588
Eco47I	GGWCC	2 cut(s)	65, 521
Eco57I	CTGAAG	1 cut(s)	677
Eco88I	CYCGRG	1 cut(s)	851
EcoO109I	RGGNCCY	2 cut(s)	800, 857
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	3 cut(s)	136, 574, 874
EcoRV	GATATC	1 cut(s)	588
EcoT14I	CCWWGG	2 cut(s)	38, 221
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	2 cut(s)	38, 221
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	5 cut(s)	373, 421, 676, 682, 836
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	5 cut(s)	369, 417, 672, 678, 832
FauNDI	CATATG	2 cut(s)	307, 340
Fnu4HI	GCNGC	4 cut(s)	180, 785, 788, 870
FokI	GGATG	2 cut(s)	364, 514
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	4 cut(s)	180, 785, 788, 870
FspBI	CTAG	4 cut(s)	96, 216, 275, 774
GluI	GCNGC	4 cut(s)	180, 785, 788, 870
HaeIII	GGCC	8 cut(s)	82, 169, 205, 630, 665, 772, 802, 859
HapII	CCGG	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	373, 421, 676, 682, 836
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	152, 772
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	536, 583
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	44, 96, 698
HpyCH4V	TGCA	4 cut(s)	17, 607, 784, 872
HpyF10VI	GCNNNNNNNGC	1 cut(s)	808
HpyF3I	CTNAG	2 cut(s)	9, 197
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	373, 421, 676, 682, 836
Kzo9I	GATC	3 cut(s)	538, 649, 703
LmnI	GCTCC	1 cut(s)	243
Lsp1109I	GCAGC	4 cut(s)	166, 796, 799, 856
LweI	GCATC	3 cut(s)	594, 630, 771
MabI	ACCWGGT	1 cut(s)	874
MaeI	CTAG	4 cut(s)	96, 216, 275, 774
MalI	GATC	3 cut(s)	540, 651, 705
MboI	GATC	3 cut(s)	538, 649, 703
MboII	GAAGA	1 cut(s)	683
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	2 cut(s)	248, 402
MluCI	AATT	4 cut(s)	190, 235, 619, 728
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	3 cut(s)	138, 576, 876
MvaI	CCWGG	3 cut(s)	138, 576, 876
MwoI	GCNNNNNNNGC	1 cut(s)	808
NdeI	CATATG	2 cut(s)	307, 340
NdeII	GATC	3 cut(s)	538, 649, 703
NlaIII	CATG	5 cut(s)	373, 421, 676, 682, 836
NlaIV	GGNNCC	1 cut(s)	858
NspI	RCATGY	3 cut(s)	373, 421, 676
PaeR7I	CTCGAG	1 cut(s)	851
PaqCI	CACCTGC	1 cut(s)	8
PceI	AGGCCT	5 cut(s)	82, 169, 205, 665, 772
PciI	ACATGT	1 cut(s)	672
PdmI	GAANNNNTTC	1 cut(s)	147
PflMI	CCANNNNNTGG	1 cut(s)	881
PkrI	GCNGC	4 cut(s)	181, 786, 789, 871
PscI	ACATGT	1 cut(s)	672
Psp6I	CCWGG	3 cut(s)	136, 574, 874
PspGI	CCWGG	3 cut(s)	136, 574, 874
PspN4I	GGNNCC	1 cut(s)	858
PspPI	GGNCC	4 cut(s)	65, 521, 800, 857
PspXI	VCTCGAGB	1 cut(s)	851
PsrI	GAACNNNNNNTAC	2 cut(s)	295, 327
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	3 cut(s)	210, 304, 744
RsaNI	GTAC	3 cut(s)	209, 303, 743
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	4 cut(s)	180, 785, 788, 870
Sau3AI	GATC	3 cut(s)	538, 649, 703
Sau96I	GGNCC	4 cut(s)	65, 521, 800, 857
SbfI	CCTGCAGG	1 cut(s)	19
ScrFI	CCNGG	3 cut(s)	138, 576, 876
SdaI	CCTGCAGG	1 cut(s)	19
SduI	GDGCHC	2 cut(s)	248, 402
SexAI	ACCWGGT	1 cut(s)	874
SfaNI	GCATC	3 cut(s)	594, 630, 771
SfcI	CTRYAG	1 cut(s)	15
Sfr274I	CTCGAG	1 cut(s)	851
SinI	GGWCC	2 cut(s)	65, 521
SlaI	CTCGAG	1 cut(s)	851
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	851
SmoI	CTYRAG	1 cut(s)	851
Sse8387I	CCTGCAGG	1 cut(s)	19
Sse9I	AATT	4 cut(s)	190, 235, 619, 728
SseBI	AGGCCT	5 cut(s)	82, 169, 205, 665, 772
SsiI	CCGC	2 cut(s)	155, 885
SspMI	CTAG	4 cut(s)	96, 216, 275, 774
StuI	AGGCCT	5 cut(s)	82, 169, 205, 665, 772
StyD4I	CCNGG	3 cut(s)	136, 574, 874
StyI	CCWWGG	2 cut(s)	38, 221
TaqI	TCGA	1 cut(s)	852
TasI	AATT	4 cut(s)	190, 235, 619, 728
TatI	WGTACW	1 cut(s)	742
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TseI	GCWGC	4 cut(s)	179, 784, 787, 869
TspDTI	ATGAA	3 cut(s)	203, 324, 667
TspGWI	ACGGA	1 cut(s)	587
Van91I	CCANNNNNTGG	1 cut(s)	881
VpaK11BI	GGWCC	2 cut(s)	65, 521
XapI	RAATTY	2 cut(s)	190, 619
XceI	RCATGY	3 cut(s)	373, 421, 676
XcmI	CCANNNNNNNNNTGG	1 cut(s)	579
XhoI	CTCGAG	1 cut(s)	851
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	4 cut(s)	96, 216, 275, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.