Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Forward (+)

19578892 .. 19582998

Gene Structure 4107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G200400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAGTCGAACCCCCAGCCTTCAGCTAATGGTCCTCCCCCAAAACCGTGGGAGAGAGCAGGTTCCTCATCTGGTCCTGCACCTTTTAAACCCCCATCAGCTGGAAGCACAAGTGATGTAGTTGAGGCTTCAGGAACTGCTAAACCTGGAGAAATAGTTTCAAGTTCCGATAGAAATGCCACTGTTAATAGAAATGCTCTTGCTAGGCCTGTTCCCTCAAGGCCGTGGGAGCAGAACTATGGGAGCAGCAGCAACTACGGAGGCTATGGTTCCACTATGAACTATAACTCGGGTTACGGCTCCGGAATCTCCGGAATGTCTGGAATGTCTGGAATGTATGGTTCATCATATGGTGGAACTGGAGGATTATATGGTGGGGGAATGTATGGCAACAACAGCATGTATAGGGGAGGGTATGGAGGTGGAATGTACGGATCTTCTGGGATGTATGGAGGTGGAATGTACAATAGTGGTCTTGGAAGCCAGATGGGTGGTATTGGAATGGGCATGGGTGGCCCTTATGGAGGTCAAGATCCAAATGATCCATATGGTGGTCCTCCATCTCCACCAGGGTTTTGGATTTCAGTACTTCGGGTGACGCAAGGTGTGGTAAACTTTTTTGGTCGAATTGCAATTCTCATAGACCAGAACACCCAGGCATTCCATATGTTCATGTCTGCACTTCTTCAGCTTTTTGATCGCTCTGGATTATTGTATGGAGAGCTGGCTAGATTTGTATTAAGGATACTGGGAGTTAAAACAAAACCCAATAAGGTTCATCCACAAGGTCCCAACGGGGGTCCTCTCCATGGACCCCATGGACCCCATGGACCCCAGAACTACATCGAGGGTCCAAGACCTGCTCCGAGTGGTGGTTGGGACAATGTTTGGGAAAATGATACCAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

31.4

Weight (kDa)

8.94

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	50, 868
AccB7I	CCANNNNNTGG	2 cut(s)	101, 551
AccIII	TCCGGA	2 cut(s)	302, 311
AclWI	GGATC	3 cut(s)	442, 527, 536
AcuI	CTGAAG	3 cut(s)	6, 114, 671
AfaI	GTAC	3 cut(s)	431, 464, 588
AfiI	CCNNNNNNNGG	6 cut(s)	101, 524, 551, 797, 809, 872
AgsI	TTSAA	1 cut(s)	162
AjnI	CCWGG	3 cut(s)	145, 568, 654
AluBI	AGCT	4 cut(s)	26, 101, 691, 724
AluI	AGCT	4 cut(s)	26, 101, 691, 724
AlwI	GGATC	3 cut(s)	442, 527, 536
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	289
Aor13HI	TCCGGA	2 cut(s)	302, 311
AoxI	GGCC	3 cut(s)	206, 221, 514
ApeKI	GCWGC	2 cut(s)	246, 249
AsuHPI	GGTGA	1 cut(s)	607
AvaI	CYCGRG	1 cut(s)	289
AvaII	GGWCC	9 cut(s)	32, 74, 554, 788, 800, 812, 821, 830, 851
BbvI	GCAGC	2 cut(s)	258, 261
BccI	CCATC	3 cut(s)	103, 481, 568
BceAI	ACGGC	2 cut(s)	208, 313
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	3 cut(s)	147, 570, 656
BciVI	GTATCC	1 cut(s)	738
BfaI	CTAG	2 cut(s)	204, 729
BfuAI	ACCTGC	2 cut(s)	50, 868
BfuI	GTATCC	1 cut(s)	738
BisI	GCNGC	2 cut(s)	247, 250
BlsI	GCNGC	2 cut(s)	248, 251
BmcAI	AGTACT	1 cut(s)	588
Bme1390I	CCNGG	3 cut(s)	147, 570, 656
Bme18I	GGWCC	9 cut(s)	32, 74, 554, 788, 800, 812, 821, 830, 851
BmeT110I	CYCGRG	1 cut(s)	289
BmiI	GGNNCC	9 cut(s)	64, 271, 301, 790, 801, 814, 823, 832, 852
BmrFI	CCNGG	3 cut(s)	147, 570, 656
BmrI	ACTGGG	1 cut(s)	758
BmuI	ACTGGG	1 cut(s)	758
BpmI	CTGGAG	2 cut(s)	168, 381
BpuEI	CTTGAG	1 cut(s)	202
BsaJI	CCNNGG	7 cut(s)	47, 224, 569, 654, 808, 817, 826
BsaWI	WCCGGW	2 cut(s)	302, 311
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	6 cut(s)	101, 524, 551, 797, 809, 872
Bse1I	ACTGG	3 cut(s)	364, 753, 903
BseAI	TCCGGA	2 cut(s)	302, 311
BseBI	CCWGG	3 cut(s)	147, 570, 656
BseDI	CCNNGG	7 cut(s)	47, 224, 569, 654, 808, 817, 826
BseGI	GGATG	2 cut(s)	450, 778
BseLI	CCNNNNNNNGG	6 cut(s)	101, 524, 551, 797, 809, 872
BseNI	ACTGG	3 cut(s)	364, 753, 903
BseXI	GCAGC	2 cut(s)	258, 261
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	2 cut(s)	63, 663
BshFI	GGCC	3 cut(s)	208, 223, 516
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	303, 312
BslFI	GGGAC	2 cut(s)	774, 893
BslI	CCNNNNNNNGG	6 cut(s)	101, 524, 551, 797, 809, 872
BsmFI	GGGAC	2 cut(s)	774, 893
BsmI	GAATGC	1 cut(s)	659
BsnI	GGCC	3 cut(s)	208, 223, 516
BsoBI	CYCGRG	1 cut(s)	289
Bsp13I	TCCGGA	2 cut(s)	302, 311
Bsp1407I	TGTACA	1 cut(s)	462
Bsp143I	GATC	4 cut(s)	434, 532, 541, 697
Bsp19I	CCATGG	3 cut(s)	808, 817, 826
BspANI	GGCC	3 cut(s)	208, 223, 516
BspEI	TCCGGA	2 cut(s)	302, 311
BspLI	GGNNCC	9 cut(s)	64, 271, 301, 790, 801, 814, 823, 832, 852
BspMI	ACCTGC	2 cut(s)	50, 868
BspPI	GGATC	3 cut(s)	442, 527, 536
BsrGI	TGTACA	1 cut(s)	462
BsrI	ACTGG	3 cut(s)	364, 753, 903
BssECI	CCNNGG	7 cut(s)	47, 224, 569, 654, 808, 817, 826
BssMI	GATC	4 cut(s)	434, 532, 541, 697
BssT1I	CCWWGG	3 cut(s)	808, 817, 826
Bst2UI	CCWGG	3 cut(s)	147, 570, 656
Bst4CI	ACNGT	2 cut(s)	48, 184
BstAUI	TGTACA	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	726
BstDSI	CCRYGG	5 cut(s)	47, 224, 808, 817, 826
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstF5I	GGATG	2 cut(s)	450, 778
BstKTI	GATC	4 cut(s)	437, 535, 544, 700
BstMBI	GATC	4 cut(s)	434, 532, 541, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 396, 513
BstNI	CCWGG	3 cut(s)	147, 570, 656
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	3 cut(s)	145, 568, 654
BstV1I	GCAGC	2 cut(s)	258, 261
BstX2I	RGATCY	2 cut(s)	434, 532
BstXI	CCANNNNNNTGG	3 cut(s)	48, 491, 576
BstYI	RGATCY	2 cut(s)	434, 532
BsuI	GTATCC	1 cut(s)	738
BsuRI	GGCC	3 cut(s)	208, 223, 516
BtgI	CCRYGG	5 cut(s)	47, 224, 808, 817, 826
BtsCI	GGATG	2 cut(s)	450, 778
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	2 cut(s)	50, 868
Cac8I	GCNNGC	1 cut(s)	726
CaiI	CAGNNNCTG	1 cut(s)	137
CseI	GACGC	1 cut(s)	607
Csp6I	GTAC	3 cut(s)	430, 463, 587
CviAII	CATG	6 cut(s)	400, 508, 673, 809, 818, 827
CviQI	GTAC	3 cut(s)	430, 463, 587
DpnI	GATC	4 cut(s)	436, 534, 543, 699
DpnII	GATC	4 cut(s)	434, 532, 541, 697
DraI	TTTAAA	1 cut(s)	88
Eco130I	CCWWGG	3 cut(s)	808, 817, 826
Eco147I	AGGCCT	1 cut(s)	208
Eco47I	GGWCC	9 cut(s)	32, 74, 554, 788, 800, 812, 821, 830, 851
Eco57I	CTGAAG	3 cut(s)	6, 114, 671
Eco88I	CYCGRG	1 cut(s)	289
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoO109I	RGGNCCY	2 cut(s)	788, 800
EcoRII	CCWGG	3 cut(s)	145, 568, 654
EcoT14I	CCWWGG	3 cut(s)	808, 817, 826
ErhI	CCWWGG	3 cut(s)	808, 817, 826
FaeI	CATG	6 cut(s)	403, 511, 676, 812, 821, 830
FaqI	GGGAC	2 cut(s)	774, 893
FatI	CATG	6 cut(s)	399, 507, 672, 808, 817, 826
FauNDI	CATATG	3 cut(s)	349, 547, 666
Fnu4HI	GCNGC	2 cut(s)	247, 250
FokI	GGATG	2 cut(s)	457, 765
Fsp4HI	GCNGC	2 cut(s)	247, 250
FspBI	CTAG	2 cut(s)	204, 729
GluI	GCNGC	2 cut(s)	247, 250
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	168, 381
HaeIII	GGCC	3 cut(s)	208, 223, 516
HapII	CCGG	2 cut(s)	303, 312
HgaI	GACGC	1 cut(s)	607
Hin1II	CATG	6 cut(s)	403, 511, 676, 812, 821, 830
HinfI	GANTC	2 cut(s)	5, 306
HpaII	CCGG	2 cut(s)	303, 312
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	2 cut(s)	169, 867
Hpy188III	TCNNGA	7 cut(s)	132, 303, 312, 321, 330, 530, 705
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	2 cut(s)	48, 184
HpyCH4V	TGCA	3 cut(s)	80, 632, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 396, 513
Hsp92II	CATG	6 cut(s)	403, 511, 676, 812, 821, 830
Kpn2I	TCCGGA	2 cut(s)	302, 311
Kzo9I	GATC	4 cut(s)	434, 532, 541, 697
LmnI	GCTCC	4 cut(s)	229, 243, 305, 868
Lsp1109I	GCAGC	2 cut(s)	258, 261
MaeI	CTAG	2 cut(s)	204, 729
MaeIII	GTNAC	2 cut(s)	293, 595
MalI	GATC	4 cut(s)	436, 534, 543, 699
MboI	GATC	4 cut(s)	434, 532, 541, 697
MboII	GAAGA	2 cut(s)	429, 677
MflI	RGATCY	2 cut(s)	434, 532
MluCI	AATT	2 cut(s)	627, 633
MlyI	GAGTC	1 cut(s)	14
MroI	TCCGGA	2 cut(s)	302, 311
MseI	TTAA	4 cut(s)	87, 186, 740, 756
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	2 cut(s)	303, 312
MspR9I	CCNGG	3 cut(s)	147, 570, 656
Mva1269I	GAATGC	1 cut(s)	659
MvaI	CCWGG	3 cut(s)	147, 570, 656
MwoI	GCNNNNNNNGC	3 cut(s)	229, 396, 513
NcoI	CCATGG	3 cut(s)	808, 817, 826
NdeI	CATATG	3 cut(s)	349, 547, 666
NdeII	GATC	4 cut(s)	434, 532, 541, 697
NlaIII	CATG	6 cut(s)	403, 511, 676, 812, 821, 830
NlaIV	GGNNCC	9 cut(s)	64, 271, 301, 790, 801, 814, 823, 832, 852
NmuCI	GTSAC	1 cut(s)	595
NspI	RCATGY	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	208
PctI	GAATGC	1 cut(s)	659
PfeI	GAWTC	1 cut(s)	306
PflMI	CCANNNNNTGG	2 cut(s)	101, 551
PkrI	GCNGC	2 cut(s)	248, 251
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	2 cut(s)	788, 800
Psp5II	RGGWCCY	2 cut(s)	788, 800
Psp6I	CCWGG	3 cut(s)	145, 568, 654
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	3 cut(s)	145, 568, 654
PspN4I	GGNNCC	9 cut(s)	64, 271, 301, 790, 801, 814, 823, 832, 852
PspPPI	RGGWCCY	2 cut(s)	788, 800
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	2 cut(s)	434, 532
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	3 cut(s)	431, 464, 588
RsaNI	GTAC	3 cut(s)	430, 463, 587
SaqAI	TTAA	4 cut(s)	87, 186, 740, 756
SatI	GCNGC	2 cut(s)	247, 250
Sau3AI	GATC	4 cut(s)	434, 532, 541, 697
ScaI	AGTACT	1 cut(s)	588
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	147, 570, 656
SinI	GGWCC	9 cut(s)	32, 74, 554, 788, 800, 812, 821, 830, 851
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	2 cut(s)	627, 633
SseBI	AGGCCT	1 cut(s)	208
SspMI	CTAG	2 cut(s)	204, 729
StuI	AGGCCT	1 cut(s)	208
StyD4I	CCNGG	3 cut(s)	145, 568, 654
StyI	CCWWGG	3 cut(s)	808, 817, 826
TaaI	ACNGT	2 cut(s)	48, 184
TaqI	TCGA	3 cut(s)	8, 625, 846
TasI	AATT	2 cut(s)	627, 633
TatI	WGTACW	2 cut(s)	462, 586
TfiI	GAWTC	1 cut(s)	306
Tru1I	TTAA	4 cut(s)	87, 186, 740, 756
Tru9I	TTAA	4 cut(s)	87, 186, 740, 756
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	2 cut(s)	246, 249
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	4 cut(s)	293, 333, 661, 767
TspGWI	ACGGA	2 cut(s)	273, 447
TspRI	CASTG	1 cut(s)	187
Van91I	CCANNNNNTGG	2 cut(s)	101, 551
VpaK11BI	GGWCC	9 cut(s)	32, 74, 554, 788, 800, 812, 821, 830, 851
XagI	CCTNNNNNAGG	1 cut(s)	522
XceI	RCATGY	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	3 cut(s)	573, 815, 824
XspI	CTAG	2 cut(s)	204, 729
ZrmI	AGTACT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.