Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Reverse (-)

15625456 .. 15628681

Gene Structure 3226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001437

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGACTCCAAGCCCCAACCTTCAGCTAATGGTCCTCCCCCAAAGCCGTGGGAAAGAGCAGGCTCCTCATCTGGTCCTGCACCTTTTAAACCCTCATCGGCTGGTAGCACAAGTGACGTAGTGGAGGCTTCAGGAACTGCTAGACCTGGAGAAATAGTATCAAGTGCTGATAAAAATGCCCCTAATAACAGAAATACTCTTGGCAGGCCTGTTCCCTCTAGGCCTTGGGAGCAGAACTATGGAAGTAGCAACACTTACGGAGGTTATGGCTCTGGAATGTCTGGAATGAGCGGAATGTCTGGAACGTATGGTTCATATGGTGGAACTGGAGGATTATATGGTGGAACTGGAGGGATGTATGGTGGAGGGATGTATGGCAACAGCATGTATAGGGGAGGGTATGGTGGGCTTTATGGTGGGTCTTCTGGGATGTATGGAGCTGGGTCTTCTGGAATGTACGGAGGTGGAATGTACAATAGTGGTATGGGAGGCCCAATGGGTGGTTATGGAATGGGCATGGGTGGTCCTTATGGTGGTCAAGATCCAAATGATCCATACGGTGCTCCTCCATCTGCGCCAGGGTTTTGGGTTTCAGCACTCCATGTGCTGCAAGGTGTGGTCAGCTTTTTTGGTCGGATTGCAATTCTGATAGACCAAAACACCCAAGCATTCCATTTGTTCATGACCGCACTACTTCAGCTTTTTGATCGCTCTGGTCTATTGTATGGAGAGCTAGCTAGGTTTGTATTGAGGATATTGGGAGTCAGAACAAAACCCAAGATGGGACCTCCAGCAGGTCCCAATGGGCTTCCATTCTCTGGGCCCGGCGGTGCACCTGAGAACCGAAACTACATTGAGGGACCAAAGGCCGCTCCTAGTGGTTCCTGGGATAATGTTTGGGGAAATGATACCAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

31.18

Weight (kDa)

9.1

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	785
AccB7I	CCANNNNNTGG	2 cut(s)	500, 818
AccBSI	CCGCTC	2 cut(s)	291, 872
AciI	CCGC	4 cut(s)	291, 687, 828, 870
AclWI	GGATC	2 cut(s)	536, 545
AcuI	CTGAAG	3 cut(s)	6, 114, 680
AfaI	GTAC	2 cut(s)	458, 473
AfiI	CCNNNNNNNGG	5 cut(s)	500, 533, 782, 794, 818
AjnI	CCWGG	3 cut(s)	145, 577, 884
AluBI	AGCT	6 cut(s)	26, 440, 624, 700, 733, 737
AluI	AGCT	6 cut(s)	26, 440, 624, 700, 733, 737
Alw21I	GWGCWC	2 cut(s)	565, 835
Alw44I	GTGCAC	1 cut(s)	831
AlwI	GGATC	2 cut(s)	536, 545
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	5 cut(s)	206, 221, 490, 821, 867
ApaI	GGGCCC	1 cut(s)	825
ApaLI	GTGCAC	1 cut(s)	831
ApeKI	GCWGC	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	9 cut(s)	32, 74, 491, 524, 785, 797, 821, 822, 860
AsuC2I	CCSGG	1 cut(s)	825
AsuNHI	GCTAGC	1 cut(s)	733
AvaII	GGWCC	6 cut(s)	32, 74, 524, 785, 797, 860
BaeGI	GKGCMC	2 cut(s)	825, 835
BanII	GRGCYC	1 cut(s)	825
BbsI	GAAGAC	2 cut(s)	414, 438
Bbv12I	GWGCWC	2 cut(s)	565, 835
BbvI	GCAGC	1 cut(s)	594
BccI	CCATC	2 cut(s)	577, 775
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	3 cut(s)	147, 579, 886
BcnI	CCSGG	1 cut(s)	825
BfaI	CTAG	5 cut(s)	141, 219, 734, 738, 876
BfuAI	ACCTGC	1 cut(s)	785
BisI	GCNGC	2 cut(s)	608, 870
BlsI	GCNGC	2 cut(s)	609, 871
Bme1390I	CCNGG	4 cut(s)	147, 579, 825, 886
Bme18I	GGWCC	6 cut(s)	32, 74, 524, 785, 797, 860
BmgT120I	GGNCC	9 cut(s)	32, 74, 491, 524, 785, 797, 821, 822, 860
BmiI	GGNNCC	6 cut(s)	64, 786, 799, 823, 861, 883
BmrFI	CCNGG	4 cut(s)	147, 579, 825, 886
BmtI	GCTAGC	1 cut(s)	737
BpiI	GAAGAC	2 cut(s)	414, 438
BpmI	CTGGAG	4 cut(s)	168, 348, 369, 774
BpuMI	CCSGG	1 cut(s)	825
BsaJI	CCNNGG	4 cut(s)	47, 224, 578, 885
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	5 cut(s)	500, 533, 782, 794, 818
Bse1I	ACTGG	3 cut(s)	331, 352, 912
BseBI	CCWGG	3 cut(s)	147, 579, 886
BseDI	CCNNGG	4 cut(s)	47, 224, 578, 885
BseGI	GGATG	3 cut(s)	360, 375, 435
BseLI	CCNNNNNNNGG	5 cut(s)	500, 533, 782, 794, 818
BseMII	CTCAG	1 cut(s)	828
BseNI	ACTGG	3 cut(s)	331, 352, 912
BseRI	GAGGAG	2 cut(s)	55, 555
BseSI	GKGCMC	2 cut(s)	825, 835
BseXI	GCAGC	1 cut(s)	594
BseYI	CCCAGC	1 cut(s)	440
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	5 cut(s)	208, 223, 492, 823, 869
BsiHKAI	GWGCWC	2 cut(s)	565, 835
BsiSI	CCGG	1 cut(s)	825
BslFI	GGGAC	3 cut(s)	783, 798, 873
BslI	CCNNNNNNNGG	5 cut(s)	500, 533, 782, 794, 818
BsmFI	GGGAC	3 cut(s)	783, 798, 873
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	5 cut(s)	208, 223, 492, 823, 869
Bsp120I	GGGCCC	1 cut(s)	821
Bsp1286I	GDGCHC	3 cut(s)	565, 825, 835
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	3 cut(s)	541, 550, 706
BspACI	CCGC	4 cut(s)	291, 687, 828, 870
BspANI	GGCC	5 cut(s)	208, 223, 492, 823, 869
BspCNI	CTCAG	1 cut(s)	829
BspHI	TCATGA	1 cut(s)	681
BspLI	GGNNCC	6 cut(s)	64, 786, 799, 823, 861, 883
BspMI	ACCTGC	1 cut(s)	785
BspOI	GCTAGC	1 cut(s)	737
BspPI	GGATC	2 cut(s)	536, 545
BsrBI	CCGCTC	2 cut(s)	291, 872
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	3 cut(s)	331, 352, 912
BssECI	CCNNGG	4 cut(s)	47, 224, 578, 885
BssMI	GATC	3 cut(s)	541, 550, 706
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	3 cut(s)	147, 579, 886
Bst4CI	ACNGT	1 cut(s)	560
BstAUI	TGTACA	1 cut(s)	471
BstC8I	GCNNGC	3 cut(s)	61, 206, 735
BstDEI	CTNAG	1 cut(s)	837
BstDSI	CCRYGG	1 cut(s)	47
BstENI	CCTNNNNNAGG	1 cut(s)	792
BstF5I	GGATG	3 cut(s)	360, 375, 435
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	3 cut(s)	544, 553, 709
BstMBI	GATC	3 cut(s)	541, 550, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNI	CCWGG	3 cut(s)	147, 579, 886
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	4 cut(s)	145, 577, 823, 884
BstSLI	GKGCMC	2 cut(s)	825, 835
BstV1I	GCAGC	1 cut(s)	594
BstV2I	GAAGAC	2 cut(s)	414, 438
BstX2I	RGATCY	1 cut(s)	541
BstXI	CCANNNNNNTGG	2 cut(s)	48, 585
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	5 cut(s)	208, 223, 492, 823, 869
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	360, 375, 435
BveI	ACCTGC	1 cut(s)	785
Cac8I	GCNNGC	3 cut(s)	61, 206, 735
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	1 cut(s)	681
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	9 cut(s)	32, 74, 491, 524, 785, 797, 821, 822, 860
Csp6I	GTAC	2 cut(s)	457, 472
CviAII	CATG	4 cut(s)	385, 517, 602, 682
CviQI	GTAC	2 cut(s)	457, 472
DdeI	CTNAG	1 cut(s)	837
DpnI	GATC	3 cut(s)	543, 552, 708
DpnII	GATC	3 cut(s)	541, 550, 706
DraI	TTTAAA	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	224
Eco147I	AGGCCT	2 cut(s)	208, 223
Eco24I	GRGCYC	1 cut(s)	825
Eco47I	GGWCC	6 cut(s)	32, 74, 524, 785, 797, 860
Eco57I	CTGAAG	3 cut(s)	6, 114, 680
EcoNI	CCTNNNNNAGG	1 cut(s)	792
EcoO109I	RGGNCCY	2 cut(s)	785, 797
EcoRII	CCWGG	3 cut(s)	145, 577, 884
EcoT14I	CCWWGG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	825
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	4 cut(s)	388, 520, 605, 685
FaqI	GGGAC	3 cut(s)	783, 798, 873
FatI	CATG	4 cut(s)	384, 516, 601, 681
FauNDI	CATATG	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	608, 870
FokI	GGATG	3 cut(s)	367, 382, 442
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	2 cut(s)	608, 870
FspBI	CTAG	5 cut(s)	141, 219, 734, 738, 876
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	2 cut(s)	608, 870
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	4 cut(s)	168, 348, 369, 774
HaeIII	GGCC	5 cut(s)	208, 223, 492, 823, 869
HapII	CCGG	1 cut(s)	825
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	4 cut(s)	388, 520, 605, 685
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HinfI	GANTC	2 cut(s)	5, 762
HpaII	CCGG	1 cut(s)	825
Hpy166II	GTNNAC	1 cut(s)	833
Hpy188I	TCNGA	3 cut(s)	636, 648, 767
Hpy188III	TCNNGA	7 cut(s)	132, 273, 282, 300, 450, 539, 682
Hpy8I	GTNNAC	1 cut(s)	833
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4IV	ACGT	2 cut(s)	117, 305
HpyCH4V	TGCA	4 cut(s)	80, 610, 641, 833
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	1 cut(s)	837
HpySE526I	ACGT	2 cut(s)	117, 305
Hsp92II	CATG	4 cut(s)	388, 520, 605, 685
HspAI	GCGC	1 cut(s)	575
Kzo9I	GATC	3 cut(s)	541, 550, 706
LmnI	GCTCC	5 cut(s)	68, 229, 437, 568, 877
Lsp1109I	GCAGC	1 cut(s)	594
MaeI	CTAG	5 cut(s)	141, 219, 734, 738, 876
MaeII	ACGT	2 cut(s)	117, 305
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	3 cut(s)	543, 552, 708
MbiI	CCGCTC	2 cut(s)	291, 872
MboI	GATC	3 cut(s)	541, 550, 706
MboII	GAAGA	2 cut(s)	414, 438
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	3 cut(s)	565, 825, 835
MluCI	AATT	1 cut(s)	642
MlyI	GAGTC	1 cut(s)	771
MmeI	TCCRAC	1 cut(s)	614
MseI	TTAA	1 cut(s)	87
MspI	CCGG	1 cut(s)	825
MspR9I	CCNGG	4 cut(s)	147, 579, 825, 886
Mva1269I	GAATGC	1 cut(s)	668
MvaI	CCWGG	3 cut(s)	147, 579, 886
MwoI	GCNNNNNNNGC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	825
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	3 cut(s)	541, 550, 706
NheI	GCTAGC	1 cut(s)	733
NlaIII	CATG	4 cut(s)	388, 520, 605, 685
NlaIV	GGNNCC	6 cut(s)	64, 786, 799, 823, 861, 883
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	388
PagI	TCATGA	1 cut(s)	681
PceI	AGGCCT	2 cut(s)	208, 223
PctI	GAATGC	1 cut(s)	668
PflMI	CCANNNNNTGG	2 cut(s)	500, 818
PkrI	GCNGC	2 cut(s)	609, 871
PleI	GAGTC	1 cut(s)	770
PpsI	GAGTC	1 cut(s)	770
PpuMI	RGGWCCY	2 cut(s)	785, 797
Psp5II	RGGWCCY	2 cut(s)	785, 797
Psp6I	CCWGG	3 cut(s)	145, 577, 884
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	3 cut(s)	145, 577, 884
PspN4I	GGNNCC	6 cut(s)	64, 786, 799, 823, 861, 883
PspOMI	GGGCCC	1 cut(s)	821
PspPI	GGNCC	9 cut(s)	32, 74, 491, 524, 785, 797, 821, 822, 860
PspPPI	RGGWCCY	2 cut(s)	785, 797
PsrI	GAACNNNNNNTAC	2 cut(s)	833, 865
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	541
RsaI	GTAC	2 cut(s)	458, 473
RsaNI	GTAC	2 cut(s)	457, 472
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	608, 870
Sau3AI	GATC	3 cut(s)	541, 550, 706
Sau96I	GGNCC	9 cut(s)	32, 74, 491, 524, 785, 797, 821, 822, 860
SchI	GAGTC	1 cut(s)	771
ScrFI	CCNGG	4 cut(s)	147, 579, 825, 886
SduI	GDGCHC	3 cut(s)	565, 825, 835
SinI	GGWCC	6 cut(s)	32, 74, 524, 785, 797, 860
Sse9I	AATT	1 cut(s)	642
SseBI	AGGCCT	2 cut(s)	208, 223
SsiI	CCGC	4 cut(s)	291, 687, 828, 870
SspMI	CTAG	5 cut(s)	141, 219, 734, 738, 876
StuI	AGGCCT	2 cut(s)	208, 223
StyD4I	CCNGG	4 cut(s)	145, 577, 823, 884
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	560
TaiI	ACGT	2 cut(s)	120, 308
TasI	AATT	1 cut(s)	642
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	872
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	607
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	303, 670
TspGWI	ACGGA	2 cut(s)	273, 474
Van91I	CCANNNNNTGG	2 cut(s)	500, 818
VneI	GTGCAC	1 cut(s)	831
VpaK11BI	GGWCC	6 cut(s)	32, 74, 524, 785, 797, 860
XagI	CCTNNNNNAGG	1 cut(s)	792
XceI	RCATGY	1 cut(s)	388
XspI	CTAG	5 cut(s)	141, 219, 734, 738, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.