Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Forward (+)

36041665 .. 36045609

Gene Structure 3945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG163000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCCGGTAATGGTCCTCCGCCAAAGCCGTGGGAGCAAGCAGGCTCCTCCTCTGGGCCTGCACCTTTTAAACCATCATCAGCTGGAAGCACAAGTGATGTAGTGGAGGCTTCAGGAACTGCTAGACCTGGAGAAATAGTATCAAGTACTGATAGAACCGCCATAATTAATCGAAATACTCTTGGTAGGCCTGTTCCCTCTAGGCCTTGGGTGCAGAACTATGGAAGTAACACATATGGAGGCTATGGTTCTACTACGAACTATAACTCAGGTTATGGCTCTGGAATGACTGGCATATCTGGAATGTATGGCGGTACATATGGTGGCAATGGAGGATTATATGGTGGAGGGATGTATGGCAACAGCATGTATACCGGAGGATATGGTGGGCTTTATGGTGGATCTTCTGGGATGTACGGGGCTGGGTCTTCTGGGATGTATGGTGGTGGAATGTACAATAGTGGCATGGGAGGCCCACTGGGTGGCTATGGAATGGGCATGGGTGGTCCTTATGGAGGTCAAGATCCAAATGATCCATATGGTGGTCCTCCATCTCCACCAGGCTTTTGGGTTTCAGTACTTCGGGTGATGCAAGGTGTGGTTAACTTTTTCGGTCGGATTGCAATTCTAATAGACCAGAATACACAGGCATTGCATTTGTTCATGACTGCTCTTCTTCAGCTTTTTGATCGCTCTGGTATTTTGTACGGGGAGCTAGCTAGGTTTGTATTCAGAATATTGGGAATCAGAACAAAACCCAAGATGGGGCCTCCACAAGGACCCAATGGTCTTCCGTCTCCTGGACCCGGCAGTGCTTCTGAAAACCGTAATTACATTGAGGGGCCAAAGGCTGCTCCTAGTGGTTCCTGGGAGAATGTTTGGGGAAATGATACCAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

30.75

Weight (kDa)

9.11

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	786
AccB7I	CCANNNNNTGG	2 cut(s)	482, 542
AccI	GTMKAC	1 cut(s)	371
AciI	CCGC	3 cut(s)	20, 159, 312
AclWI	GGATC	3 cut(s)	409, 518, 527
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	96, 662
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	6 cut(s)	148, 316, 416, 455, 579, 707
AfiI	CCNNNNNNNGG	9 cut(s)	54, 482, 515, 542, 764, 765, 776, 800, 806
AjnI	CCWGG	4 cut(s)	127, 559, 799, 866
AluBI	AGCT	4 cut(s)	83, 682, 715, 719
AluI	AGCT	4 cut(s)	83, 682, 715, 719
Alw26I	GTCTC	1 cut(s)	801
AlwI	GGATC	3 cut(s)	409, 518, 527
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	7 cut(s)	3, 56, 188, 203, 472, 767, 842
ApeKI	GCWGC	1 cut(s)	851
AseI	ATTAAT	1 cut(s)	168
AspS9I	GGNCC	9 cut(s)	14, 56, 473, 506, 545, 767, 779, 803, 842
AsuC2I	CCSGG	1 cut(s)	807
AsuHPI	GGTGA	1 cut(s)	598
AsuNHI	GCTAGC	1 cut(s)	715
AvaII	GGWCC	5 cut(s)	14, 506, 545, 779, 803
BbsI	GAAGAC	2 cut(s)	420, 782
BbvI	GCAGC	1 cut(s)	838
BccI	CCATC	3 cut(s)	82, 559, 757
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	4 cut(s)	129, 561, 801, 868
BcnI	CCSGG	1 cut(s)	807
BcoDI	GTCTC	1 cut(s)	801
BfaI	CTAG	5 cut(s)	123, 201, 716, 720, 858
BisI	GCNGC	1 cut(s)	852
BlsI	GCNGC	1 cut(s)	853
BmcAI	AGTACT	2 cut(s)	148, 579
Bme1390I	CCNGG	5 cut(s)	129, 561, 801, 807, 868
Bme18I	GGWCC	5 cut(s)	14, 506, 545, 779, 803
BmgT120I	GGNCC	9 cut(s)	14, 56, 473, 506, 545, 767, 779, 803, 842
BmiI	GGNNCC	6 cut(s)	46, 768, 781, 805, 843, 865
BmrFI	CCNGG	5 cut(s)	129, 561, 801, 807, 868
BmrI	ACTGGG	1 cut(s)	488
BmsI	GCATC	1 cut(s)	579
BmtI	GCTAGC	1 cut(s)	719
BmuI	ACTGGG	1 cut(s)	488
BpiI	GAAGAC	2 cut(s)	420, 782
BpmI	CTGGAG	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	807
BsaJI	CCNNGG	3 cut(s)	29, 206, 867
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	9 cut(s)	54, 482, 515, 542, 764, 765, 776, 800, 806
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	295, 483
Bse3DI	GCAATG	2 cut(s)	334, 650
BseBI	CCWGG	4 cut(s)	129, 561, 801, 868
BseDI	CCNNGG	3 cut(s)	29, 206, 867
BseGI	GGATG	3 cut(s)	357, 417, 441
BseLI	CCNNNNNNNGG	9 cut(s)	54, 482, 515, 542, 764, 765, 776, 800, 806
BseMI	GCAATG	2 cut(s)	334, 650
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	295, 483
BseRI	GAGGAG	2 cut(s)	37, 40
BseXI	GCAGC	1 cut(s)	838
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	2 cut(s)	45, 233
Bsh1285I	CGRYCG	1 cut(s)	616
BshFI	GGCC	7 cut(s)	5, 58, 190, 205, 474, 769, 844
BsiEI	CGRYCG	1 cut(s)	616
BsiSI	CCGG	3 cut(s)	6, 375, 807
BslI	CCNNNNNNNGG	9 cut(s)	54, 482, 515, 542, 764, 765, 776, 800, 806
BsmAI	GTCTC	1 cut(s)	801
BsmBI	CGTCTC	1 cut(s)	801
BsnI	GGCC	7 cut(s)	5, 58, 190, 205, 474, 769, 844
Bsp1407I	TGTACA	1 cut(s)	453
Bsp143I	GATC	4 cut(s)	401, 523, 532, 688
BspACI	CCGC	3 cut(s)	20, 159, 312
BspANI	GGCC	7 cut(s)	5, 58, 190, 205, 474, 769, 844
BspCNI	CTCAG	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	6 cut(s)	46, 768, 781, 805, 843, 865
BspOI	GCTAGC	1 cut(s)	719
BspPI	GGATC	3 cut(s)	409, 518, 527
BspQI	GCTCTTC	1 cut(s)	678
BsrDI	GCAATG	2 cut(s)	334, 650
BsrFI	RCCGGY	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	453
BsrI	ACTGG	2 cut(s)	295, 483
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	29, 206, 867
BssMI	GATC	4 cut(s)	401, 523, 532, 688
BssNAI	GTATAC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	206
Bst1107I	GTATAC	1 cut(s)	372
Bst2UI	CCWGG	4 cut(s)	129, 561, 801, 868
Bst4CI	ACNGT	1 cut(s)	827
Bst6I	CTCTTC	1 cut(s)	678
BstAUI	TGTACA	1 cut(s)	453
BstC8I	GCNNGC	4 cut(s)	39, 43, 60, 717
BstDEI	CTNAG	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	29
BstENI	CCTNNNNNAGG	2 cut(s)	513, 774
BstF5I	GGATG	3 cut(s)	357, 417, 441
BstKTI	GATC	4 cut(s)	404, 526, 535, 691
BstMAI	GTCTC	1 cut(s)	801
BstMBI	GATC	4 cut(s)	401, 523, 532, 688
BstMCI	CGRYCG	1 cut(s)	616
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 211, 471
BstNI	CCWGG	4 cut(s)	129, 561, 801, 868
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	5 cut(s)	127, 559, 799, 805, 866
BstV1I	GCAGC	1 cut(s)	838
BstV2I	GAAGAC	2 cut(s)	420, 782
BstX2I	RGATCY	2 cut(s)	401, 523
BstXI	CCANNNNNNTGG	2 cut(s)	30, 567
BstYI	RGATCY	2 cut(s)	401, 523
BstZ17I	GTATAC	1 cut(s)	372
BsuRI	GGCC	7 cut(s)	5, 58, 190, 205, 474, 769, 844
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	3 cut(s)	357, 417, 441
BtsI	GCAGTG	1 cut(s)	817
BtsIMutI	CAGTG	2 cut(s)	476, 817
Cac8I	GCNNGC	4 cut(s)	39, 43, 60, 717
CaiI	CAGNNNCTG	1 cut(s)	119
CciI	TCATGA	1 cut(s)	663
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	9 cut(s)	14, 56, 473, 506, 545, 767, 779, 803, 842
Csp6I	GTAC	6 cut(s)	147, 315, 415, 454, 578, 706
CviAII	CATG	4 cut(s)	367, 466, 499, 664
CviQI	GTAC	6 cut(s)	147, 315, 415, 454, 578, 706
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	4 cut(s)	403, 525, 534, 690
DpnII	GATC	4 cut(s)	401, 523, 532, 688
DraI	TTTAAA	1 cut(s)	70
DraIII	CACNNNGTG	1 cut(s)	482
DrdI	GACNNNNNNGTC	1 cut(s)	786
DseDI	GACNNNNNNGTC	1 cut(s)	786
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	206
Eco147I	AGGCCT	2 cut(s)	190, 205
Eco47I	GGWCC	5 cut(s)	14, 506, 545, 779, 803
Eco57I	CTGAAG	2 cut(s)	96, 662
EcoNI	CCTNNNNNAGG	2 cut(s)	513, 774
EcoO109I	RGGNCCY	2 cut(s)	767, 779
EcoRII	CCWGG	4 cut(s)	127, 559, 799, 866
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	801
FaeI	CATG	4 cut(s)	370, 469, 502, 667
FatI	CATG	4 cut(s)	366, 465, 498, 663
FauNDI	CATATG	3 cut(s)	235, 319, 538
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	1 cut(s)	852
FokI	GGATG	3 cut(s)	364, 424, 448
Fsp4HI	GCNGC	1 cut(s)	852
FspBI	CTAG	5 cut(s)	123, 201, 716, 720, 858
GluI	GCNGC	1 cut(s)	852
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	7 cut(s)	5, 58, 190, 205, 474, 769, 844
HapII	CCGG	3 cut(s)	6, 375, 807
Hin1II	CATG	4 cut(s)	370, 469, 502, 667
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	1 cut(s)	744
HpaI	GTTAAC	1 cut(s)	604
HpaII	CCGG	3 cut(s)	6, 375, 807
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	2 cut(s)	372, 604
Hpy188I	TCNGA	4 cut(s)	618, 734, 749, 820
Hpy188III	TCNNGA	5 cut(s)	114, 282, 300, 521, 664
Hpy8I	GTNNAC	2 cut(s)	372, 604
HpyCH4III	ACNGT	1 cut(s)	827
HpyCH4V	TGCA	5 cut(s)	62, 214, 592, 623, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 211, 471
HpyF3I	CTNAG	1 cut(s)	268
Hsp92II	CATG	4 cut(s)	370, 469, 502, 667
KspAI	GTTAAC	1 cut(s)	604
Kzo9I	GATC	4 cut(s)	401, 523, 532, 688
LguI	GCTCTTC	1 cut(s)	678
LmnI	GCTCC	4 cut(s)	34, 50, 712, 859
Lsp1109I	GCAGC	1 cut(s)	838
LweI	GCATC	1 cut(s)	579
MaeI	CTAG	5 cut(s)	123, 201, 716, 720, 858
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	4 cut(s)	403, 525, 534, 690
MboI	GATC	4 cut(s)	401, 523, 532, 688
MboII	GAAGA	5 cut(s)	396, 420, 665, 668, 782
MflI	RGATCY	2 cut(s)	401, 523
MluCI	AATT	3 cut(s)	165, 624, 829
MmeI	TCCRAC	1 cut(s)	596
MseI	TTAA	3 cut(s)	69, 168, 603
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	3 cut(s)	6, 375, 807
MspR9I	CCNGG	5 cut(s)	129, 561, 801, 807, 868
MvaI	CCWGG	4 cut(s)	129, 561, 801, 868
MwoI	GCNNNNNNNGC	3 cut(s)	34, 211, 471
NciI	CCSGG	1 cut(s)	807
NdeI	CATATG	3 cut(s)	235, 319, 538
NdeII	GATC	4 cut(s)	401, 523, 532, 688
NheI	GCTAGC	1 cut(s)	715
NlaIII	CATG	4 cut(s)	370, 469, 502, 667
NlaIV	GGNNCC	6 cut(s)	46, 768, 781, 805, 843, 865
NspI	RCATGY	1 cut(s)	370
PagI	TCATGA	1 cut(s)	663
PceI	AGGCCT	2 cut(s)	190, 205
PciSI	GCTCTTC	1 cut(s)	678
PfeI	GAWTC	1 cut(s)	744
PflMI	CCANNNNNTGG	2 cut(s)	482, 542
PfoI	TCCNGGA	1 cut(s)	799
PkrI	GCNGC	1 cut(s)	853
PpuMI	RGGWCCY	1 cut(s)	779
PshBI	ATTAAT	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	779
Psp6I	CCWGG	4 cut(s)	127, 559, 799, 866
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	4 cut(s)	127, 559, 799, 866
PspN4I	GGNNCC	6 cut(s)	46, 768, 781, 805, 843, 865
PspPI	GGNCC	9 cut(s)	14, 56, 473, 506, 545, 767, 779, 803, 842
PspPPI	RGGWCCY	1 cut(s)	779
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	2 cut(s)	401, 523
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	6 cut(s)	148, 316, 416, 455, 579, 707
RsaNI	GTAC	6 cut(s)	147, 315, 415, 454, 578, 706
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	3 cut(s)	69, 168, 603
SatI	GCNGC	1 cut(s)	852
Sau3AI	GATC	4 cut(s)	401, 523, 532, 688
Sau96I	GGNCC	9 cut(s)	14, 56, 473, 506, 545, 767, 779, 803, 842
ScaI	AGTACT	2 cut(s)	148, 579
ScrFI	CCNGG	5 cut(s)	129, 561, 801, 807, 868
SfaNI	GCATC	1 cut(s)	579
SinI	GGWCC	5 cut(s)	14, 506, 545, 779, 803
Sse9I	AATT	3 cut(s)	165, 624, 829
SseBI	AGGCCT	2 cut(s)	190, 205
SsiI	CCGC	3 cut(s)	20, 159, 312
SspI	AATATT	1 cut(s)	738
SspMI	CTAG	5 cut(s)	123, 201, 716, 720, 858
StuI	AGGCCT	2 cut(s)	190, 205
StyD4I	CCNGG	5 cut(s)	127, 559, 799, 805, 866
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	827
TaqI	TCGA	1 cut(s)	172
TaqII	GACCGA	1 cut(s)	602
TasI	AATT	3 cut(s)	165, 624, 829
TatI	WGTACW	3 cut(s)	146, 453, 577
TfiI	GAWTC	1 cut(s)	744
Tru1I	TTAA	3 cut(s)	69, 168, 603
Tru9I	TTAA	3 cut(s)	69, 168, 603
TscAI	CASTG	2 cut(s)	483, 817
TseI	GCWGC	1 cut(s)	851
TspDTI	ATGAA	1 cut(s)	652
TspGWI	ACGGA	1 cut(s)	783
TspRI	CASTG	2 cut(s)	483, 817
Van91I	CCANNNNNTGG	2 cut(s)	482, 542
VpaK11BI	GGWCC	5 cut(s)	14, 506, 545, 779, 803
VspI	ATTAAT	1 cut(s)	168
XagI	CCTNNNNNAGG	2 cut(s)	513, 774
XceI	RCATGY	1 cut(s)	370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	564
XmiI	GTMKAC	1 cut(s)	371
XspI	CTAG	5 cut(s)	123, 201, 716, 720, 858
ZrmI	AGTACT	2 cut(s)	148, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.