Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Forward (+)

55967534 .. 55971092

Gene Structure 3559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG417100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTTGATGCCTGCTGCAGCTAATGGTCCTCCCCCAAAGCCGTGGGAAAGAGCAGGCTCCTCATCTGGTCCTGCACCTTTTAAACCCTCATCAGCTGGTAGCACAAGTGATGTAGTGGAGGCTTCAGGAACTGCTAGACCTGGAGAAATAGTATCAAGTGCTGATAAAAGTGCCCCTAATAACAGAAATACTCTTGGTAGGCCTGTTCCCTCTAGGCCTTGGGAGCAGAACTATGGAAGTAGCAACACTTATGGAGTAAACTCAGGTTATGGCTCGGGAATGTCTGGAATGACCGGAATGTCTGGAACATATGGTTCATATGGTGGAAGTGGAGGATTATACGGTGGAACTGGAGGGATGTATGGTGGAGGGATGTATGGCAACAGCATGTATAGGGGAGGGTATGGTGGGCTTTATGGTGGGTCTTCTGGGATGTATGGAGCTGGGTCTTCTGGGATGTACGGAGGTGGAATGTACAATAGTGGTATGGGAGGCCCAATGGGTGGTTATGGAATGGGCATGGGTGGTCCTTATGGAGGTCAAGATCCAAATGATCCATACGGTGCTCCTCCATCTGCGCCAGGGTTTTGGGTTTCAGCACTCCATGTGCTGCAAGGTGTGGTCAGCTTTTTCGGTCGGATTGCAATTCTGATAGACCAAAACACCCAGGCATTCCATTTGTTCATGACCGCTCTACTTCAGGTTTTTATCTGTCATTGTATCTTTTCATTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

24.75

Weight (kDa)

7.73

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	503
AccBSI	CCGCTC	1 cut(s)	692
AciI	CCGC	1 cut(s)	690
AclWI	GGATC	2 cut(s)	539, 548
AcuI	CTGAAG	2 cut(s)	108, 683
AfaI	GTAC	2 cut(s)	461, 476
AfiI	CCNNNNNNNGG	2 cut(s)	503, 536
AjnI	CCWGG	3 cut(s)	139, 580, 666
AluBI	AGCT	4 cut(s)	20, 95, 443, 627
AluI	AGCT	4 cut(s)	20, 95, 443, 627
Alw21I	GWGCWC	1 cut(s)	568
AlwI	GGATC	2 cut(s)	539, 548
AlwNI	CAGNNNCTG	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	3 cut(s)	200, 215, 493
ApeKI	GCWGC	3 cut(s)	14, 17, 610
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	4 cut(s)	26, 68, 494, 527
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	3 cut(s)	26, 68, 527
BaeGI	GKGCMC	1 cut(s)	175
BbsI	GAAGAC	2 cut(s)	417, 441
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	2 cut(s)	29, 597
BccI	CCATC	1 cut(s)	580
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	3 cut(s)	141, 582, 668
BfaI	CTAG	2 cut(s)	135, 213
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	3 cut(s)	15, 18, 611
BlsI	GCNGC	3 cut(s)	16, 19, 612
Bme1390I	CCNGG	3 cut(s)	141, 582, 668
Bme18I	GGWCC	3 cut(s)	26, 68, 527
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	4 cut(s)	26, 68, 494, 527
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	3 cut(s)	141, 582, 668
BpiI	GAAGAC	2 cut(s)	417, 441
BpmI	CTGGAG	2 cut(s)	162, 372
BsaJI	CCNNGG	4 cut(s)	41, 218, 581, 666
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	2 cut(s)	503, 536
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	3 cut(s)	141, 582, 668
BseDI	CCNNGG	4 cut(s)	41, 218, 581, 666
BseGI	GGATG	4 cut(s)	363, 378, 438, 462
BseLI	CCNNNNNNNGG	2 cut(s)	503, 536
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	2 cut(s)	49, 558
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	29, 597
BseYI	CCCAGC	1 cut(s)	443
BsgI	GTGCAG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	637
BshFI	GGCC	3 cut(s)	202, 217, 495
BsiEI	CGRYCG	1 cut(s)	637
BsiHKAI	GWGCWC	1 cut(s)	568
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	2 cut(s)	503, 536
BsmI	GAATGC	1 cut(s)	671
BsnI	GGCC	3 cut(s)	202, 217, 495
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	2 cut(s)	175, 568
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	544, 553
BspACI	CCGC	1 cut(s)	690
BspANI	GGCC	3 cut(s)	202, 217, 495
BspCNI	CTCAG	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	1 cut(s)	58
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	2 cut(s)	539, 548
BsrBI	CCGCTC	1 cut(s)	692
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	4 cut(s)	41, 218, 581, 666
BssMI	GATC	2 cut(s)	544, 553
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	3 cut(s)	141, 582, 668
Bst4CI	ACNGT	2 cut(s)	344, 563
BstAUI	TGTACA	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	12, 55
BstDEI	CTNAG	1 cut(s)	262
BstDSI	CCRYGG	1 cut(s)	41
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	4 cut(s)	363, 378, 438, 462
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	2 cut(s)	547, 556
BstMBI	GATC	2 cut(s)	544, 553
BstMCI	CGRYCG	1 cut(s)	637
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	3 cut(s)	141, 582, 668
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	3 cut(s)	139, 580, 666
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	29, 597
BstV2I	GAAGAC	2 cut(s)	417, 441
BstX2I	RGATCY	1 cut(s)	544
BstXI	CCANNNNNNTGG	2 cut(s)	42, 588
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	3 cut(s)	202, 217, 495
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	4 cut(s)	363, 378, 438, 462
Cac8I	GCNNGC	2 cut(s)	12, 55
CaiI	CAGNNNCTG	1 cut(s)	131
CciI	TCATGA	1 cut(s)	684
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	4 cut(s)	26, 68, 494, 527
Csp6I	GTAC	2 cut(s)	460, 475
CviAII	CATG	4 cut(s)	388, 520, 605, 685
CviQI	GTAC	2 cut(s)	460, 475
DdeI	CTNAG	1 cut(s)	262
DpnI	GATC	2 cut(s)	546, 555
DpnII	GATC	2 cut(s)	544, 553
DraI	TTTAAA	1 cut(s)	82
DrdI	GACNNNNNNGTC	1 cut(s)	298
DseDI	GACNNNNNNGTC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	218
Eco147I	AGGCCT	2 cut(s)	202, 217
Eco47I	GGWCC	3 cut(s)	26, 68, 527
Eco57I	CTGAAG	2 cut(s)	108, 683
Eco88I	CYCGRG	1 cut(s)	274
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoRII	CCWGG	3 cut(s)	139, 580, 666
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	4 cut(s)	391, 523, 608, 688
FatI	CATG	4 cut(s)	387, 519, 604, 684
FauNDI	CATATG	2 cut(s)	310, 319
Fnu4HI	GCNGC	3 cut(s)	15, 18, 611
FokI	GGATG	4 cut(s)	370, 385, 445, 469
Fsp4HI	GCNGC	3 cut(s)	15, 18, 611
FspBI	CTAG	2 cut(s)	135, 213
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	3 cut(s)	15, 18, 611
GsaI	CCCAGC	1 cut(s)	447
GsuI	CTGGAG	2 cut(s)	162, 372
HaeIII	GGCC	3 cut(s)	202, 217, 495
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	4 cut(s)	391, 523, 608, 688
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HpaII	CCGG	1 cut(s)	294
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	639, 651, 737
Hpy188III	TCNNGA	6 cut(s)	126, 276, 285, 303, 542, 685
Hpy8I	GTNNAC	1 cut(s)	259
HpyCH4III	ACNGT	2 cut(s)	344, 563
HpyCH4V	TGCA	4 cut(s)	17, 74, 613, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	262
Hsp92II	CATG	4 cut(s)	391, 523, 608, 688
HspAI	GCGC	1 cut(s)	578
Kzo9I	GATC	2 cut(s)	544, 553
LmnI	GCTCC	4 cut(s)	62, 223, 440, 571
Lsp1109I	GCAGC	2 cut(s)	29, 597
MaeI	CTAG	2 cut(s)	135, 213
MalI	GATC	2 cut(s)	546, 555
MbiI	CCGCTC	1 cut(s)	692
MboI	GATC	2 cut(s)	544, 553
MboII	GAAGA	2 cut(s)	417, 441
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	2 cut(s)	175, 568
MluCI	AATT	1 cut(s)	645
MmeI	TCCRAC	1 cut(s)	617
MseI	TTAA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	3 cut(s)	141, 582, 668
Mva1269I	GAATGC	1 cut(s)	671
MvaI	CCWGG	3 cut(s)	141, 582, 668
MwoI	GCNNNNNNNGC	1 cut(s)	223
NdeI	CATATG	2 cut(s)	310, 319
NdeII	GATC	2 cut(s)	544, 553
NlaIII	CATG	4 cut(s)	391, 523, 608, 688
NlaIV	GGNNCC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	391
PagI	TCATGA	1 cut(s)	684
PceI	AGGCCT	2 cut(s)	202, 217
PctI	GAATGC	1 cut(s)	671
PflMI	CCANNNNNTGG	1 cut(s)	503
PkrI	GCNGC	3 cut(s)	16, 19, 612
Psp6I	CCWGG	3 cut(s)	139, 580, 666
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	3 cut(s)	139, 580, 666
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	4 cut(s)	26, 68, 494, 527
PstI	CTGCAG	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	461, 476
RsaNI	GTAC	2 cut(s)	460, 475
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	15, 18, 611
Sau3AI	GATC	2 cut(s)	544, 553
Sau96I	GGNCC	4 cut(s)	26, 68, 494, 527
ScrFI	CCNGG	3 cut(s)	141, 582, 668
SduI	GDGCHC	2 cut(s)	175, 568
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	3 cut(s)	26, 68, 527
Sse9I	AATT	1 cut(s)	645
SseBI	AGGCCT	2 cut(s)	202, 217
SsiI	CCGC	1 cut(s)	690
SspMI	CTAG	2 cut(s)	135, 213
StuI	AGGCCT	2 cut(s)	202, 217
StyD4I	CCNGG	3 cut(s)	139, 580, 666
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	2 cut(s)	344, 563
TaqII	GACCGA	1 cut(s)	623
TasI	AATT	1 cut(s)	645
TatI	WGTACW	1 cut(s)	474
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseI	GCWGC	3 cut(s)	14, 17, 610
TspDTI	ATGAA	3 cut(s)	306, 673, 717
TspGWI	ACGGA	1 cut(s)	477
Van91I	CCANNNNNTGG	1 cut(s)	503
VpaK11BI	GGWCC	3 cut(s)	26, 68, 527
XagI	CCTNNNNNAGG	1 cut(s)	534
XceI	RCATGY	1 cut(s)	391
XspI	CTAG	2 cut(s)	135, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.