Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Reverse (-)

14167354 .. 14169488

Gene Structure 2135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCCTGCTGCAGCTAACGGCCCTCCCCCAAAGCCGTGGGAGAGAGCAGGCTCCTCATCTGGTCCTGCACCTTTTAAACCTTCATCAGCTGGTAGCACAAGTGATGTAGTGGAGGCTTCAGGAACTGCTAGACCTGGAGAAATAGTATCAAGTGCTGATAAAAGTGCCCCTAATAACAGAAATACTCTTGGTAGGCCTGTTCCCTCTAGGCCTTGGGAGCAGAACTATGGAAGTAGCAACACTTATGGAGGTTATGGCTCTGGAATGTCTGGAATGACCGGAATGTCTGGAACATATGGTTCATATGGTGGAACTGGAGGATTATATGGTGGAACTGGAGGGATGTATGGTGGAGGGATGTACGGCAACAGCATGTATAGGGGAGGGTATGGTGGGCTTTATGGTGGGTCTTCTGGGATGTATGGAGCTGGGTCTTCTGGGATGTATGGAGGTGGAATGTACAATAGTGGTATGGGAGGCCCAATGGGTGGTTATGGAATGGGCATGGGTGGTCCTTATGGAGGTCAAGATCCAAATGATCCATACGGTGCTCCTCCATCTGCGCCAGGGTTTTGGGTTTCAGCACTCCATGTGCTGCAAGGTGTGGTCAGCTTTTTCGGTCGGATTGCAATTCTGATAGACCAAAACACGCAGGCATTCCATTTGTTCATGACTGCTCTACTACAGCTTTTTGATCGCTCTGGTCTATTGTACGGAGAGCTAGCCAGGTTTGTATTGAGAATATTGGGAGTCAGAACAAAACCCAAGATGGGCCCTCCAGCAGGTCCCAATGGGATTCCGTTCCCTGGGCCTGGCGGTCCCCATGAGAACCGAAATTACATTGAGGGATCGAAGGCCGCTCCTAGTGGTTCCTGGGATAATGTTTGGGGAAATGATACCAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

30.73

Weight (kDa)

9.11

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	283
Acc36I	ACCTGC	1 cut(s)	773
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	860
AciI	CCGC	2 cut(s)	816, 858
AclWI	GGATC	3 cut(s)	524, 533, 856
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	3 cut(s)	362, 461, 713
AfiI	CCNNNNNNNGG	6 cut(s)	488, 521, 770, 782, 806, 812
AjnI	CCWGG	6 cut(s)	133, 565, 725, 805, 811, 872
AluBI	AGCT	6 cut(s)	14, 89, 428, 612, 688, 721
AluI	AGCT	6 cut(s)	14, 89, 428, 612, 688, 721
Alw21I	GWGCWC	1 cut(s)	553
AlwI	GGATC	3 cut(s)	524, 533, 856
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	7 cut(s)	19, 194, 209, 478, 772, 809, 855
ApaI	GGGCCC	1 cut(s)	776
ApeKI	GCWGC	3 cut(s)	8, 11, 595
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	9 cut(s)	20, 62, 479, 512, 772, 773, 785, 809, 818
AsuNHI	GCTAGC	1 cut(s)	721
AvaII	GGWCC	4 cut(s)	62, 512, 785, 818
BaeGI	GKGCMC	2 cut(s)	169, 776
BanII	GRGCYC	1 cut(s)	776
BbsI	GAAGAC	2 cut(s)	402, 426
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	2 cut(s)	23, 582
BccI	CCATC	2 cut(s)	565, 763
BceAI	ACGGC	3 cut(s)	19, 34, 379
BciT130I	CCWGG	6 cut(s)	135, 567, 727, 807, 813, 874
BfaI	CTAG	4 cut(s)	129, 207, 722, 864
BfmI	CTRYAG	2 cut(s)	9, 683
BfuAI	ACCTGC	1 cut(s)	773
BisI	GCNGC	4 cut(s)	9, 12, 596, 858
BlsI	GCNGC	4 cut(s)	10, 13, 597, 859
Bme1390I	CCNGG	6 cut(s)	135, 567, 727, 807, 813, 874
Bme18I	GGWCC	4 cut(s)	62, 512, 785, 818
BmgT120I	GGNCC	9 cut(s)	20, 62, 479, 512, 772, 773, 785, 809, 818
BmiI	GGNNCC	5 cut(s)	52, 774, 787, 820, 871
BmrFI	CCNGG	6 cut(s)	135, 567, 727, 807, 813, 874
BmtI	GCTAGC	1 cut(s)	725
BpiI	GAAGAC	2 cut(s)	402, 426
BpmI	CTGGAG	4 cut(s)	156, 336, 357, 762
BsaJI	CCNNGG	6 cut(s)	35, 212, 566, 805, 806, 873
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	6 cut(s)	488, 521, 770, 782, 806, 812
Bse1I	ACTGG	3 cut(s)	319, 340, 900
BseBI	CCWGG	6 cut(s)	135, 567, 727, 807, 813, 874
BseDI	CCNNGG	6 cut(s)	35, 212, 566, 805, 806, 873
BseGI	GGATG	4 cut(s)	348, 363, 423, 447
BseLI	CCNNNNNNNGG	6 cut(s)	488, 521, 770, 782, 806, 812
BseNI	ACTGG	3 cut(s)	319, 340, 900
BseRI	GAGGAG	2 cut(s)	43, 543
BseSI	GKGCMC	2 cut(s)	169, 776
BseXI	GCAGC	2 cut(s)	23, 582
BseYI	CCCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	51
Bsh1285I	CGRYCG	1 cut(s)	622
BshFI	GGCC	7 cut(s)	21, 196, 211, 480, 774, 811, 857
BsiEI	CGRYCG	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	553
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	2 cut(s)	771, 804
BslI	CCNNNNNNNGG	6 cut(s)	488, 521, 770, 782, 806, 812
BsmFI	GGGAC	2 cut(s)	771, 804
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	7 cut(s)	21, 196, 211, 480, 774, 811, 857
Bsp120I	GGGCCC	1 cut(s)	772
Bsp1286I	GDGCHC	3 cut(s)	169, 553, 776
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	4 cut(s)	529, 538, 694, 848
BspACI	CCGC	2 cut(s)	816, 858
BspANI	GGCC	7 cut(s)	21, 196, 211, 480, 774, 811, 857
BspHI	TCATGA	1 cut(s)	669
BspLI	GGNNCC	5 cut(s)	52, 774, 787, 820, 871
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	773
BspOI	GCTAGC	1 cut(s)	725
BspPI	GGATC	3 cut(s)	524, 533, 856
BsrBI	CCGCTC	1 cut(s)	860
BsrGI	TGTACA	1 cut(s)	459
BsrI	ACTGG	3 cut(s)	319, 340, 900
BssECI	CCNNGG	6 cut(s)	35, 212, 566, 805, 806, 873
BssMI	GATC	4 cut(s)	529, 538, 694, 848
BssT1I	CCWWGG	1 cut(s)	212
Bst2UI	CCWGG	6 cut(s)	135, 567, 727, 807, 813, 874
Bst4CI	ACNGT	1 cut(s)	548
BstAUI	TGTACA	1 cut(s)	459
BstC8I	GCNNGC	4 cut(s)	6, 49, 654, 723
BstDSI	CCRYGG	1 cut(s)	35
BstENI	CCTNNNNNAGG	2 cut(s)	519, 780
BstF5I	GGATG	4 cut(s)	348, 363, 423, 447
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	4 cut(s)	532, 541, 697, 851
BstMBI	GATC	4 cut(s)	529, 538, 694, 848
BstMCI	CGRYCG	1 cut(s)	622
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	6 cut(s)	135, 567, 727, 807, 813, 874
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	6 cut(s)	133, 565, 725, 805, 811, 872
BstSFI	CTRYAG	2 cut(s)	9, 683
BstSLI	GKGCMC	2 cut(s)	169, 776
BstV1I	GCAGC	2 cut(s)	23, 582
BstV2I	GAAGAC	2 cut(s)	402, 426
BstX2I	RGATCY	1 cut(s)	529
BstXI	CCANNNNNNTGG	2 cut(s)	36, 573
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	7 cut(s)	21, 196, 211, 480, 774, 811, 857
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	4 cut(s)	348, 363, 423, 447
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	4 cut(s)	6, 49, 654, 723
CaiI	CAGNNNCTG	1 cut(s)	125
CciI	TCATGA	1 cut(s)	669
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	9 cut(s)	20, 62, 479, 512, 772, 773, 785, 809, 818
Csp6I	GTAC	3 cut(s)	361, 460, 712
CviAII	CATG	5 cut(s)	373, 505, 590, 670, 824
CviQI	GTAC	3 cut(s)	361, 460, 712
DpnI	GATC	4 cut(s)	531, 540, 696, 850
DpnII	GATC	4 cut(s)	529, 538, 694, 848
DraI	TTTAAA	1 cut(s)	76
DrdI	GACNNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	212
Eco147I	AGGCCT	2 cut(s)	196, 211
Eco24I	GRGCYC	1 cut(s)	776
Eco47I	GGWCC	4 cut(s)	62, 512, 785, 818
Eco57I	CTGAAG	1 cut(s)	102
EcoNI	CCTNNNNNAGG	2 cut(s)	519, 780
EcoO109I	RGGNCCY	2 cut(s)	773, 785
EcoRII	CCWGG	6 cut(s)	133, 565, 725, 805, 811, 872
EcoT14I	CCWWGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	776
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	5 cut(s)	376, 508, 593, 673, 827
FaqI	GGGAC	2 cut(s)	771, 804
FatI	CATG	5 cut(s)	372, 504, 589, 669, 823
FauNDI	CATATG	2 cut(s)	295, 304
Fnu4HI	GCNGC	4 cut(s)	9, 12, 596, 858
FokI	GGATG	4 cut(s)	355, 370, 430, 454
FriOI	GRGCYC	1 cut(s)	776
Fsp4HI	GCNGC	4 cut(s)	9, 12, 596, 858
FspBI	CTAG	4 cut(s)	129, 207, 722, 864
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	4 cut(s)	9, 12, 596, 858
GsaI	CCCAGC	1 cut(s)	432
GsuI	CTGGAG	4 cut(s)	156, 336, 357, 762
HaeIII	GGCC	7 cut(s)	21, 196, 211, 480, 774, 811, 857
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	5 cut(s)	376, 508, 593, 673, 827
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	2 cut(s)	750, 796
HpaII	CCGG	1 cut(s)	279
Hpy188I	TCNGA	3 cut(s)	624, 636, 755
Hpy188III	TCNNGA	6 cut(s)	120, 261, 270, 288, 527, 670
HpyAV	CCTTC	2 cut(s)	90, 847
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4V	TGCA	4 cut(s)	11, 68, 598, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
Hsp92II	CATG	5 cut(s)	376, 508, 593, 673, 827
HspAI	GCGC	1 cut(s)	563
Kzo9I	GATC	4 cut(s)	529, 538, 694, 848
LmnI	GCTCC	5 cut(s)	56, 217, 425, 556, 865
Lsp1109I	GCAGC	2 cut(s)	23, 582
MaeI	CTAG	4 cut(s)	129, 207, 722, 864
MalI	GATC	4 cut(s)	531, 540, 696, 850
MbiI	CCGCTC	1 cut(s)	860
MboI	GATC	4 cut(s)	529, 538, 694, 848
MboII	GAAGA	2 cut(s)	402, 426
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	3 cut(s)	169, 553, 776
MluCI	AATT	2 cut(s)	630, 835
MlyI	GAGTC	1 cut(s)	759
MmeI	TCCRAC	1 cut(s)	602
MseI	TTAA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	6 cut(s)	135, 567, 727, 807, 813, 874
Mva1269I	GAATGC	1 cut(s)	656
MvaI	CCWGG	6 cut(s)	135, 567, 727, 807, 813, 874
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeI	CATATG	2 cut(s)	295, 304
NdeII	GATC	4 cut(s)	529, 538, 694, 848
NheI	GCTAGC	1 cut(s)	721
NlaIII	CATG	5 cut(s)	376, 508, 593, 673, 827
NlaIV	GGNNCC	5 cut(s)	52, 774, 787, 820, 871
NspI	RCATGY	1 cut(s)	376
PagI	TCATGA	1 cut(s)	669
PasI	CCCWGGG	1 cut(s)	806
PceI	AGGCCT	2 cut(s)	196, 211
PctI	GAATGC	1 cut(s)	656
PfeI	GAWTC	1 cut(s)	796
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	4 cut(s)	10, 13, 597, 859
PleI	GAGTC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	758
PpuMI	RGGWCCY	1 cut(s)	785
Psp5II	RGGWCCY	1 cut(s)	785
Psp6I	CCWGG	6 cut(s)	133, 565, 725, 805, 811, 872
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	6 cut(s)	133, 565, 725, 805, 811, 872
PspN4I	GGNNCC	5 cut(s)	52, 774, 787, 820, 871
PspOMI	GGGCCC	1 cut(s)	772
PspPI	GGNCC	9 cut(s)	20, 62, 479, 512, 772, 773, 785, 809, 818
PspPPI	RGGWCCY	1 cut(s)	785
PsrI	GAACNNNNNNTAC	2 cut(s)	821, 853
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	529
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	3 cut(s)	362, 461, 713
RsaNI	GTAC	3 cut(s)	361, 460, 712
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	4 cut(s)	9, 12, 596, 858
Sau3AI	GATC	4 cut(s)	529, 538, 694, 848
Sau96I	GGNCC	9 cut(s)	20, 62, 479, 512, 772, 773, 785, 809, 818
SchI	GAGTC	1 cut(s)	759
ScrFI	CCNGG	6 cut(s)	135, 567, 727, 807, 813, 874
SduI	GDGCHC	3 cut(s)	169, 553, 776
SfcI	CTRYAG	2 cut(s)	9, 683
SinI	GGWCC	4 cut(s)	62, 512, 785, 818
Sse9I	AATT	2 cut(s)	630, 835
SseBI	AGGCCT	2 cut(s)	196, 211
SsiI	CCGC	2 cut(s)	816, 858
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	4 cut(s)	129, 207, 722, 864
StuI	AGGCCT	2 cut(s)	196, 211
StyD4I	CCNGG	6 cut(s)	133, 565, 725, 805, 811, 872
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	548
TaqI	TCGA	1 cut(s)	851
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	2 cut(s)	630, 835
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	1 cut(s)	860
TfiI	GAWTC	1 cut(s)	796
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseI	GCWGC	3 cut(s)	8, 11, 595
TspDTI	ATGAA	3 cut(s)	72, 291, 658
TspGWI	ACGGA	2 cut(s)	729, 789
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	4 cut(s)	62, 512, 785, 818
XagI	CCTNNNNNAGG	2 cut(s)	519, 780
XceI	RCATGY	1 cut(s)	376
XspI	CTAG	4 cut(s)	129, 207, 722, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.