Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Forward (+)

43314941 .. 43318553

Gene Structure 3613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG393000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTTGATGCCTGCTGCAGCTAATGGTCCTCCCCCAAAGCCGTGGGAGAGAGCAGGCTCCTCATCTGGTCCTGCACCTTTTAAACCCTCATCAGCTGGAAGCACAAGTGATGTAGTGGAGGCTTCAGGAACTGCTAGACCTGGAGAAATAGTATCAACTGCTGATAAAAGTGCCCCGAATAACAGAAATACTCTTGGTAGGCCTGTTCCCTCTAGGCCTTGGGAGCAGAACTATGGAAGTAGCAACACGTATGGAGTAAACTCAGGTTATGGCTCTGGAATGTCTGGAATGACCGGAATGTCTGGAACATACGGTTCATATGGTGGAAGTGGAGGATTATATGGTGGAACTGGAGGGATGTATGGTGGAGGGTATGGTGGGTCTTCTGGGATGTATGGCAACAGCATGTATAGGGGAGGGTATGGTGGGCTTTATGGTGGGTCTTCTGGGATGTATGGAGCTGGGTCTTCTGGGATGTACGGAGGTGGAATGTACAATAGTGGTATGGGAGGCCCAATGGGTGGTTATGGAATGGGCATGGGTGGTCCTTATGGAGGTCAAGATCCAAATGATCCATACGGTGCTCCTCCATCTGCGCCAGGGTTTTGGGTTTCAGCACTCCATGTGCTGCAAGGTGTGGTCAGCTTTTTCGGTCGGATTGCAATTCTGATAGACCAAAACACCCAGGCATTCCATTTGTTCATGACCGCTCTACTTCAGGTTTTTATCTGTCATTGTATCTTTTCATTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

25.28

Weight (kDa)

7.73

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	521
AccBSI	CCGCTC	1 cut(s)	710
AciI	CCGC	1 cut(s)	708
AclWI	GGATC	2 cut(s)	557, 566
AcuI	CTGAAG	2 cut(s)	108, 701
AfaI	GTAC	2 cut(s)	479, 494
AfiI	CCNNNNNNNGG	2 cut(s)	521, 554
AflIII	ACRYGT	1 cut(s)	246
AjnI	CCWGG	3 cut(s)	139, 598, 684
AluBI	AGCT	4 cut(s)	20, 95, 461, 645
AluI	AGCT	4 cut(s)	20, 95, 461, 645
Alw21I	GWGCWC	1 cut(s)	586
AlwI	GGATC	2 cut(s)	557, 566
AlwNI	CAGNNNCTG	1 cut(s)	131
AoxI	GGCC	3 cut(s)	200, 215, 511
ApeKI	GCWGC	3 cut(s)	14, 17, 628
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	4 cut(s)	26, 68, 512, 545
AvaII	GGWCC	3 cut(s)	26, 68, 545
BaeGI	GKGCMC	1 cut(s)	175
BbsI	GAAGAC	3 cut(s)	375, 435, 459
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	2 cut(s)	29, 615
BccI	CCATC	1 cut(s)	598
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	3 cut(s)	141, 600, 686
BfaI	CTAG	2 cut(s)	135, 213
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	3 cut(s)	15, 18, 629
BlsI	GCNGC	3 cut(s)	16, 19, 630
Bme1390I	CCNGG	3 cut(s)	141, 600, 686
Bme18I	GGWCC	3 cut(s)	26, 68, 545
BmgT120I	GGNCC	4 cut(s)	26, 68, 512, 545
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	3 cut(s)	141, 600, 686
BpiI	GAAGAC	3 cut(s)	375, 435, 459
BpmI	CTGGAG	2 cut(s)	162, 372
BsaAI	YACGTR	1 cut(s)	249
BsaJI	CCNNGG	4 cut(s)	41, 218, 599, 684
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	2 cut(s)	521, 554
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	3 cut(s)	141, 600, 686
BseDI	CCNNGG	4 cut(s)	41, 218, 599, 684
BseGI	GGATG	4 cut(s)	363, 396, 456, 480
BseLI	CCNNNNNNNGG	2 cut(s)	521, 554
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	2 cut(s)	49, 576
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	29, 615
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	655
BshFI	GGCC	3 cut(s)	202, 217, 513
BsiEI	CGRYCG	1 cut(s)	655
BsiHKAI	GWGCWC	1 cut(s)	586
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	2 cut(s)	521, 554
BsmI	GAATGC	1 cut(s)	689
BsnI	GGCC	3 cut(s)	202, 217, 513
Bsp1286I	GDGCHC	2 cut(s)	175, 586
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	562, 571
BspACI	CCGC	1 cut(s)	708
BspANI	GGCC	3 cut(s)	202, 217, 513
BspCNI	CTCAG	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	1 cut(s)	58
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	2 cut(s)	557, 566
BsrBI	CCGCTC	1 cut(s)	710
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	4 cut(s)	41, 218, 599, 684
BssMI	GATC	2 cut(s)	562, 571
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	3 cut(s)	141, 600, 686
Bst4CI	ACNGT	2 cut(s)	314, 581
BstAUI	TGTACA	1 cut(s)	492
BstBAI	YACGTR	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	12, 55
BstDEI	CTNAG	1 cut(s)	262
BstDSI	CCRYGG	1 cut(s)	41
BstENI	CCTNNNNNAGG	1 cut(s)	552
BstF5I	GGATG	4 cut(s)	363, 396, 456, 480
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	2 cut(s)	565, 574
BstMBI	GATC	2 cut(s)	562, 571
BstMCI	CGRYCG	1 cut(s)	655
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	3 cut(s)	141, 600, 686
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	3 cut(s)	139, 598, 684
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	29, 615
BstV2I	GAAGAC	3 cut(s)	375, 435, 459
BstX2I	RGATCY	1 cut(s)	562
BstXI	CCANNNNNNTGG	2 cut(s)	42, 606
BstYI	RGATCY	1 cut(s)	562
BsuRI	GGCC	3 cut(s)	202, 217, 513
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	4 cut(s)	363, 396, 456, 480
Cac8I	GCNNGC	2 cut(s)	12, 55
CaiI	CAGNNNCTG	1 cut(s)	131
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	1 cut(s)	598
Cfr13I	GGNCC	4 cut(s)	26, 68, 512, 545
Csp6I	GTAC	2 cut(s)	478, 493
CviAII	CATG	4 cut(s)	406, 538, 623, 703
CviQI	GTAC	2 cut(s)	478, 493
DdeI	CTNAG	1 cut(s)	262
DpnI	GATC	2 cut(s)	564, 573
DpnII	GATC	2 cut(s)	562, 571
DraI	TTTAAA	1 cut(s)	82
DrdI	GACNNNNNNGTC	1 cut(s)	298
DseDI	GACNNNNNNGTC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	218
Eco147I	AGGCCT	2 cut(s)	202, 217
Eco47I	GGWCC	3 cut(s)	26, 68, 545
Eco57I	CTGAAG	2 cut(s)	108, 701
EcoNI	CCTNNNNNAGG	1 cut(s)	552
EcoRII	CCWGG	3 cut(s)	139, 598, 684
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	4 cut(s)	409, 541, 626, 706
FatI	CATG	4 cut(s)	405, 537, 622, 702
FauNDI	CATATG	1 cut(s)	319
Fnu4HI	GCNGC	3 cut(s)	15, 18, 629
FokI	GGATG	4 cut(s)	370, 403, 463, 487
Fsp4HI	GCNGC	3 cut(s)	15, 18, 629
FspBI	CTAG	2 cut(s)	135, 213
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	3 cut(s)	15, 18, 629
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	2 cut(s)	162, 372
HaeIII	GGCC	3 cut(s)	202, 217, 513
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	1 cut(s)	598
Hin1II	CATG	4 cut(s)	409, 541, 626, 706
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HpaII	CCGG	1 cut(s)	294
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	657, 669, 755
Hpy188III	TCNNGA	6 cut(s)	126, 276, 285, 303, 560, 703
Hpy8I	GTNNAC	1 cut(s)	259
HpyCH4III	ACNGT	2 cut(s)	314, 581
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	4 cut(s)	17, 74, 631, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	262
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	4 cut(s)	409, 541, 626, 706
HspAI	GCGC	1 cut(s)	596
Kzo9I	GATC	2 cut(s)	562, 571
LmnI	GCTCC	4 cut(s)	62, 223, 458, 589
Lsp1109I	GCAGC	2 cut(s)	29, 615
MaeI	CTAG	2 cut(s)	135, 213
MaeII	ACGT	1 cut(s)	248
MalI	GATC	2 cut(s)	564, 573
MbiI	CCGCTC	1 cut(s)	710
MboI	GATC	2 cut(s)	562, 571
MboII	GAAGA	3 cut(s)	375, 435, 459
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	2 cut(s)	175, 586
MluCI	AATT	1 cut(s)	663
MmeI	TCCRAC	1 cut(s)	635
MseI	TTAA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	3 cut(s)	141, 600, 686
Mva1269I	GAATGC	1 cut(s)	689
MvaI	CCWGG	3 cut(s)	141, 600, 686
MwoI	GCNNNNNNNGC	1 cut(s)	223
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	2 cut(s)	562, 571
NlaIII	CATG	4 cut(s)	409, 541, 626, 706
NlaIV	GGNNCC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	409
PagI	TCATGA	1 cut(s)	702
PceI	AGGCCT	2 cut(s)	202, 217
PctI	GAATGC	1 cut(s)	689
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	3 cut(s)	16, 19, 630
Ppu21I	YACGTR	1 cut(s)	249
Psp6I	CCWGG	3 cut(s)	139, 598, 684
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	3 cut(s)	139, 598, 684
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	4 cut(s)	26, 68, 512, 545
PstI	CTGCAG	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	562
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	479, 494
RsaNI	GTAC	2 cut(s)	478, 493
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	15, 18, 629
Sau3AI	GATC	2 cut(s)	562, 571
Sau96I	GGNCC	4 cut(s)	26, 68, 512, 545
ScrFI	CCNGG	3 cut(s)	141, 600, 686
SduI	GDGCHC	2 cut(s)	175, 586
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	3 cut(s)	26, 68, 545
Sse9I	AATT	1 cut(s)	663
SseBI	AGGCCT	2 cut(s)	202, 217
SsiI	CCGC	1 cut(s)	708
SspMI	CTAG	2 cut(s)	135, 213
StuI	AGGCCT	2 cut(s)	202, 217
StyD4I	CCNGG	3 cut(s)	139, 598, 684
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	2 cut(s)	314, 581
TaiI	ACGT	1 cut(s)	251
TaqII	GACCGA	1 cut(s)	641
TasI	AATT	1 cut(s)	663
TatI	WGTACW	1 cut(s)	492
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseI	GCWGC	3 cut(s)	14, 17, 628
TspDTI	ATGAA	3 cut(s)	306, 691, 735
TspGWI	ACGGA	1 cut(s)	495
Van91I	CCANNNNNTGG	1 cut(s)	521
VpaK11BI	GGWCC	3 cut(s)	26, 68, 545
XagI	CCTNNNNNAGG	1 cut(s)	552
XceI	RCATGY	1 cut(s)	409
XspI	CTAG	2 cut(s)	135, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.