Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Forward (+)

27133515 .. 27135725

Gene Structure 2211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1127600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTTTTTGATTTGGAAATTGAGTTACATTGTGTCCAATATTGCAGCTAACGGTCCTCCCCCAAAACCGTGGGAGAGAGCAAGTTCATCATCTGGTCCTACACCTTTCAAACCTCCATCAGCTGGAAGCACAAGTGATGTGGTTGAGGCTTCAGGAACTGCTAAACCTGGAGAAATAGTTCCAAGTTCTGATAGAAATACCGCTGTTAATAGAAATGCTCTTGCTAGGCCGGTTCCCTTTCCCTCAAGGCCTTGGGAGCAAAACTATGGAAGCAACACCAACTATGGAGGTTATGGAGGATTATACGGTGGGGAGATGTATGGCAACAACAGTATGTATAGGGGTGGGTATGGAAGTGGTGGGCTTTATGGATCTTCTGGGATGTATGGAGGTGGAATGTACAACAGTAGTTTAGGAGCCCCGGTGGGTGGTTATGGAAGGGGCATGGGTGGTCCTTATGGAGGTCAAGATCCAAATGATCAATATGGTCCTCCTCCATCTCCACCGGGGTTTTGGATTTCAGTACTTCGGGTGATGCAAGGTGTGGTTAACTTTTTTGGTCGAATTGCAATTCTCATAGACCAGGCATTCCATGTGTTCATGTCTGCACTTCTTCAGCTCTTTGATCGTTCCGGATTATTGTACGGAGGGCTAGCTAGATTTGTATTGAGTATACTGGGAGTTAAAACAAAACTCAAGGTTCGTCCTCCAGGTCTGAATGGGTTTAACGGACCCCATGGACCCTGCGGAGGAAACCAGAACTTCATTGAGGGTCCGAGACCTGCTCCTGGTGGTGGTTGGGACAATGTTTGGGAAAATGATACTGGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0010941 GO:0010942 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0042981 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 ko04510 ko04520 ko04530 ko04670 ko04810 ko05146 ko05203 ko05322 map04146 map04510 map04520 map04530 map04670 map04810 map05146 map05203 map05322

Pfam Domains

Protein Families

CSN8_PSD8_EIF3K

Protein Analysis

278

Amino Acids

29.15

Weight (kDa)

9.25

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	790
AccB7I	CCANNNNNTGG	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	673
AccIII	TCCGGA	1 cut(s)	632
AciI	CCGC	2 cut(s)	201, 747
AclWI	GGATC	2 cut(s)	379, 464
AcuI	CTGAAG	2 cut(s)	135, 599
AfaI	GTAC	3 cut(s)	401, 525, 644
AfiI	CCNNNNNNNGG	6 cut(s)	122, 428, 461, 749, 788, 794
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	4 cut(s)	166, 582, 709, 787
AloI	GAACNNNNNNTCC	2 cut(s)	162, 194
AluBI	AGCT	4 cut(s)	47, 122, 619, 656
AluI	AGCT	4 cut(s)	47, 122, 619, 656
Alw26I	GTCTC	1 cut(s)	772
AlwI	GGATC	2 cut(s)	379, 464
AlwNI	CAGNNNCTG	1 cut(s)	158
Aor13HI	TCCGGA	1 cut(s)	632
AoxI	GGCC	2 cut(s)	227, 248
ApeKI	GCWGC	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	177
AspS9I	GGNCC	7 cut(s)	53, 95, 452, 488, 731, 740, 773
AsuC2I	CCSGG	2 cut(s)	422, 507
AsuHPI	GGTGA	1 cut(s)	544
AsuNHI	GCTAGC	1 cut(s)	652
AvaII	GGWCC	7 cut(s)	53, 95, 452, 488, 731, 740, 773
BanII	GRGCYC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	2 cut(s)	124, 505
BciT130I	CCWGG	4 cut(s)	168, 584, 711, 789
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	2 cut(s)	422, 507
BcoDI	GTCTC	1 cut(s)	772
BfaI	CTAG	3 cut(s)	225, 653, 657
BfuAI	ACCTGC	1 cut(s)	790
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmcAI	AGTACT	1 cut(s)	525
Bme1390I	CCNGG	6 cut(s)	168, 422, 507, 584, 711, 789
Bme18I	GGWCC	7 cut(s)	53, 95, 452, 488, 731, 740, 773
BmgT120I	GGNCC	7 cut(s)	53, 95, 452, 488, 731, 740, 773
BmiI	GGNNCC	5 cut(s)	234, 418, 733, 742, 774
BmrFI	CCNGG	6 cut(s)	168, 422, 507, 584, 711, 789
BmrI	ACTGGG	1 cut(s)	686
BmsI	GCATC	1 cut(s)	525
BmtI	GCTAGC	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	686
BplI	GAGNNNNNCTC	2 cut(s)	769, 801
BpmI	CTGGAG	2 cut(s)	189, 693
BpuEI	CTTGAG	2 cut(s)	229, 680
BpuMI	CCSGG	2 cut(s)	422, 507
BsaI	GGTCTC	1 cut(s)	772
BsaJI	CCNNGG	5 cut(s)	68, 251, 420, 506, 736
BsaWI	WCCGGW	1 cut(s)	632
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 408, 438
Bsc4I	CCNNNNNNNGG	6 cut(s)	122, 428, 461, 749, 788, 794
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	681, 829
BseAI	TCCGGA	1 cut(s)	632
BseBI	CCWGG	4 cut(s)	168, 584, 711, 789
BseDI	CCNNGG	5 cut(s)	68, 251, 420, 506, 736
BseGI	GGATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	6 cut(s)	122, 428, 461, 749, 788, 794
BseNI	ACTGG	2 cut(s)	681, 829
BseRI	GAGGAG	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	591
BshFI	GGCC	2 cut(s)	229, 250
BsiSI	CCGG	4 cut(s)	230, 422, 506, 633
BslFI	GGGAC	1 cut(s)	815
BslI	CCNNNNNNNGG	6 cut(s)	122, 428, 461, 749, 788, 794
BsmAI	GTCTC	1 cut(s)	772
BsmFI	GGGAC	1 cut(s)	815
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	2 cut(s)	229, 250
Bso31I	GGTCTC	1 cut(s)	772
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp13I	TCCGGA	1 cut(s)	632
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	4 cut(s)	371, 469, 478, 625
Bsp19I	CCATGG	1 cut(s)	736
BspACI	CCGC	2 cut(s)	201, 747
BspANI	GGCC	2 cut(s)	229, 250
BspEI	TCCGGA	1 cut(s)	632
BspLI	GGNNCC	5 cut(s)	234, 418, 733, 742, 774
BspMI	ACCTGC	1 cut(s)	790
BspOI	GCTAGC	1 cut(s)	656
BspPI	GGATC	2 cut(s)	379, 464
BspTNI	GGTCTC	1 cut(s)	772
BsrFI	RCCGGY	1 cut(s)	229
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	681, 829
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	5 cut(s)	68, 251, 420, 506, 736
BssMI	GATC	4 cut(s)	371, 469, 478, 625
BssNAI	GTATAC	1 cut(s)	674
BssT1I	CCWWGG	2 cut(s)	251, 736
Bst1107I	GTATAC	1 cut(s)	674
Bst2UI	CCWGG	4 cut(s)	168, 584, 711, 789
Bst4CI	ACNGT	5 cut(s)	53, 69, 308, 332, 407
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	654
BstDSI	CCRYGG	2 cut(s)	68, 736
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	387
BstKTI	GATC	4 cut(s)	374, 472, 481, 628
BstMAI	GTCTC	1 cut(s)	772
BstMBI	GATC	4 cut(s)	371, 469, 478, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	4 cut(s)	168, 584, 711, 789
BstSCI	CCNGG	6 cut(s)	166, 420, 505, 582, 709, 787
BstV1I	GCAGC	1 cut(s)	56
BstX2I	RGATCY	2 cut(s)	371, 469
BstXI	CCANNNNNNTGG	1 cut(s)	69
BstYI	RGATCY	2 cut(s)	371, 469
BstZ17I	GTATAC	1 cut(s)	674
BsuRI	GGCC	2 cut(s)	229, 250
BtgI	CCRYGG	2 cut(s)	68, 736
BtsCI	GGATG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	790
Cac8I	GCNNGC	1 cut(s)	654
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	7 cut(s)	53, 95, 452, 488, 731, 740, 773
Csp6I	GTAC	3 cut(s)	400, 524, 643
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviAII	CATG	4 cut(s)	445, 593, 601, 737
CviQI	GTAC	3 cut(s)	400, 524, 643
DpnI	GATC	4 cut(s)	373, 471, 480, 627
DpnII	GATC	4 cut(s)	371, 469, 478, 625
Eco130I	CCWWGG	2 cut(s)	251, 736
Eco147I	AGGCCT	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	772
Eco47I	GGWCC	7 cut(s)	53, 95, 452, 488, 731, 740, 773
Eco57I	CTGAAG	2 cut(s)	135, 599
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoRII	CCWGG	4 cut(s)	166, 582, 709, 787
EcoT14I	CCWWGG	2 cut(s)	251, 736
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	2 cut(s)	251, 736
FaeI	CATG	4 cut(s)	448, 596, 604, 740
FaqI	GGGAC	1 cut(s)	815
FatI	CATG	4 cut(s)	444, 592, 600, 736
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	673
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	394
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	3 cut(s)	225, 653, 657
GluI	GCNGC	1 cut(s)	45
GsuI	CTGGAG	2 cut(s)	189, 693
HaeIII	GGCC	2 cut(s)	229, 250
HapII	CCGG	4 cut(s)	230, 422, 506, 633
Hin1II	CATG	4 cut(s)	448, 596, 604, 740
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HpaI	GTTAAC	1 cut(s)	550
HpaII	CCGG	4 cut(s)	230, 422, 506, 633
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	2 cut(s)	550, 674
Hpy188I	TCNGA	3 cut(s)	190, 717, 777
Hpy188III	TCNNGA	3 cut(s)	153, 467, 633
Hpy8I	GTNNAC	2 cut(s)	550, 674
HpyAV	CCTTC	1 cut(s)	432
HpyCH4III	ACNGT	5 cut(s)	53, 69, 308, 332, 407
HpyCH4V	TGCA	4 cut(s)	44, 538, 569, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
Hsp92II	CATG	4 cut(s)	448, 596, 604, 740
Kpn2I	TCCGGA	1 cut(s)	632
Ksp22I	TGATCA	1 cut(s)	478
KspAI	GTTAAC	1 cut(s)	550
Kzo9I	GATC	4 cut(s)	371, 469, 478, 625
LmnI	GCTCC	3 cut(s)	256, 416, 790
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	3 cut(s)	225, 653, 657
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	4 cut(s)	373, 471, 480, 627
MboI	GATC	4 cut(s)	371, 469, 478, 625
MboII	GAAGA	2 cut(s)	366, 605
MflI	RGATCY	2 cut(s)	371, 469
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	3 cut(s)	17, 564, 570
MroI	TCCGGA	1 cut(s)	632
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	4 cut(s)	207, 549, 684, 726
MspA1I	CMGCKG	2 cut(s)	122, 203
MspI	CCGG	4 cut(s)	230, 422, 506, 633
MspR9I	CCNGG	6 cut(s)	168, 422, 507, 584, 711, 789
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	4 cut(s)	168, 584, 711, 789
MwoI	GCNNNNNNNGC	1 cut(s)	256
NciI	CCSGG	2 cut(s)	422, 507
NcoI	CCATGG	1 cut(s)	736
NdeII	GATC	4 cut(s)	371, 469, 478, 625
NheI	GCTAGC	1 cut(s)	652
NlaIII	CATG	4 cut(s)	448, 596, 604, 740
NlaIV	GGNNCC	5 cut(s)	234, 418, 733, 742, 774
PceI	AGGCCT	1 cut(s)	250
PctI	GAATGC	1 cut(s)	587
PdmI	GAANNNNTTC	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	46
Psp6I	CCWGG	4 cut(s)	166, 582, 709, 787
PspGI	CCWGG	4 cut(s)	166, 582, 709, 787
PspN4I	GGNNCC	5 cut(s)	234, 418, 733, 742, 774
PspPI	GGNCC	7 cut(s)	53, 95, 452, 488, 731, 740, 773
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	2 cut(s)	371, 469
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	3 cut(s)	401, 525, 644
RsaNI	GTAC	3 cut(s)	400, 524, 643
SaqAI	TTAA	4 cut(s)	207, 549, 684, 726
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	4 cut(s)	371, 469, 478, 625
Sau96I	GGNCC	7 cut(s)	53, 95, 452, 488, 731, 740, 773
ScaI	AGTACT	1 cut(s)	525
ScrFI	CCNGG	6 cut(s)	168, 422, 507, 584, 711, 789
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	1 cut(s)	525
SinI	GGWCC	7 cut(s)	53, 95, 452, 488, 731, 740, 773
SmlI	CTYRAG	2 cut(s)	244, 695
SmoI	CTYRAG	2 cut(s)	244, 695
Sse9I	AATT	3 cut(s)	17, 564, 570
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	2 cut(s)	201, 747
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	3 cut(s)	225, 653, 657
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	6 cut(s)	166, 420, 505, 582, 709, 787
StyI	CCWWGG	2 cut(s)	251, 736
TaaI	ACNGT	5 cut(s)	53, 69, 308, 332, 407
TaqI	TCGA	1 cut(s)	562
TasI	AATT	3 cut(s)	17, 564, 570
TatI	WGTACW	2 cut(s)	399, 523
Tru1I	TTAA	4 cut(s)	207, 549, 684, 726
Tru9I	TTAA	4 cut(s)	207, 549, 684, 726
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	75, 589, 754
TspGWI	ACGGA	2 cut(s)	660, 744
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	7 cut(s)	53, 95, 452, 488, 731, 740, 773
XagI	CCTNNNNNAGG	1 cut(s)	459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	510
XmiI	GTMKAC	1 cut(s)	673
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	3 cut(s)	225, 653, 657
ZrmI	AGTACT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.