Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Forward (+)

24815720 .. 24816859

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0263700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGATTTGAATGAAAACAGGAGTTATGATTCTGACCAGACTACATACTACTCCGCTGACTCCGGCATGAGTGATCATGAGATAGGGTCTGACATGGGATTTGAGGATCATGAAGCTTACGAGGTAGGTTCTGACATGAGTATTACTGATGGGGATGGTGAGATAGAGCACTCTGAGCCCAGTTATGGCGGCCATGAATATGATGATTTTGTTGGCACGACACCGTTTTGGCATAGGTATCATTGTTATCCTGCATCTAAAACTGAAAAGCATGCATACACTGAGAGTAGTGATAAAATCATAATGCCTCCCTCAGCCCTCGACGTCCTTGCTTCTCTAAACATTGATTATCCAATGTTGTTCGAGTTCCGGCCATATTCTTTTGATGCTGCCGAGAATAATGAGACTGAGAAATTTCGTGTCTCTCATTGTGGGGTTTGGGAGTTCACTGCAGAAGAAGGCTTTGTCTACATGCCTAATTGGATGATGGAAAATATGAACTTGAAAGAGGGAGACCTTGTGCTGTTTCAAAACCAGACTCTTCCGAAAGGCAGTCATGTCAAATTGCAGCCTCATACAAAGGACTTCTTGGACATCCCTGACCCAAAAGCTATGTTGGAGGCGGCTCTCGGGACGTTTTCTTGTTTAACAACTGGGGATACTATTGTGCTACCTTATGAGAACAAGAAGTATTATATGGATATCATTGAAACAAAGCCTTCTGATGCCATAGGCATTATCGACACAGACTGTGAGGTTGACTTTGCACCTCCTCTTGACTATAAGGAACCTGAGAAACCTGTTGCTTCATCAATTCCTCTGAACAAGGATGCAGATGGCCAAGTTGACATACCTAAATTCAGCCCTTTTAAGGGAACTGGGAGGCGTTTGGATGGCAAGGCTTTGCAGTATGAGTCAGCATTAGATTCTTCCTCATTTGTTGCCGCGAATGGTAATCCACAACCTTGTACAGAATCTAGTTCACGAGCTACTAGACGCCGGGCTCAGGGGAAGCTTGTTTTTGGCGCAGATACTGCTCCAAAGGTAGCCTCAAAAGAGGTCAAACAACAGCAGCAGCTCCAAGAGAAAGAAGAGCCAAAGTTCCTGGCTTTTACTGGGAAAATTTACTCCCTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

379

Amino Acids

42.49

Weight (kDa)

4.61

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	78 - 182	1.8e-30	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	183 - 258	1.3e-31	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	1 cut(s)	947
AciI	CCGC	4 cut(s)	54, 189, 623, 945
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	3 cut(s)	190, 371, 838
AcsI	RAATTY	3 cut(s)	413, 857, 1122
AcyI	GRCGYC	2 cut(s)	324, 997
AfaI	GTAC	1 cut(s)	970
AfiI	CCNNNNNNNGG	4 cut(s)	185, 871, 872, 1006
AgsI	TTSAA	4 cut(s)	10, 505, 530, 710
AjnI	CCWGG	1 cut(s)	1104
AluBI	AGCT	5 cut(s)	116, 611, 989, 1015, 1078
AluI	AGCT	5 cut(s)	116, 611, 989, 1015, 1078
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	3 cut(s)	398, 427, 507
AlwI	GGATC	1 cut(s)	114
AlwNI	CAGNNNCTG	1 cut(s)	1034
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	3 cut(s)	190, 371, 838
ApeKI	GCWGC	4 cut(s)	389, 568, 1072, 1075
ApoI	RAATTY	3 cut(s)	413, 857, 1122
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspLEI	GCGC	1 cut(s)	1028
AsuC2I	CCSGG	1 cut(s)	1001
AsuHPI	GGTGA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	629
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
BalI	TGGCCA	1 cut(s)	840
BanII	GRGCYC	2 cut(s)	180, 1006
BauI	CACGAG	1 cut(s)	984
Bbv12I	GWGCWC	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	313
BbvI	GCAGC	4 cut(s)	376, 580, 1084, 1087
BccI	CCATC	5 cut(s)	143, 149, 481, 830, 887
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	1 cut(s)	1106
BciVI	GTATCC	1 cut(s)	652
BclI	TGATCA	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	1001
BcoDI	GTCTC	3 cut(s)	398, 427, 507
BfaI	CTAG	2 cut(s)	978, 993
BfmI	CTRYAG	1 cut(s)	450
BfuI	GTATCC	1 cut(s)	652
BisI	GCNGC	7 cut(s)	190, 390, 569, 624, 945, 1073, 1076
BlsI	GCNGC	7 cut(s)	191, 391, 570, 625, 946, 1074, 1077
Bme1390I	CCNGG	2 cut(s)	1001, 1106
BmeT110I	CYCGRG	1 cut(s)	629
BmiI	GGNNCC	1 cut(s)	789
BmrFI	CCNGG	2 cut(s)	1001, 1106
BmrI	ACTGGG	4 cut(s)	174, 663, 888, 1125
BmsI	GCATC	4 cut(s)	263, 376, 715, 820
BmuI	ACTGGG	4 cut(s)	174, 663, 888, 1125
Bpu10I	CCTNAGC	2 cut(s)	313, 1005
BpuMI	CCSGG	1 cut(s)	1001
BsaHI	GRCGYC	2 cut(s)	324, 997
BsaI	GGTCTC	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 871, 872, 1006
Bse1I	ACTGG	4 cut(s)	180, 658, 883, 1120
BseBI	CCWGG	1 cut(s)	1106
BseGI	GGATG	5 cut(s)	160, 489, 594, 835, 898
BseLI	CCNNNNNNNGG	4 cut(s)	185, 871, 872, 1006
BseMII	CTCAG	6 cut(s)	165, 273, 327, 399, 783, 1019
BseNI	ACTGG	4 cut(s)	180, 658, 883, 1120
BseRI	GAGGAG	1 cut(s)	762
BseXI	GCAGC	4 cut(s)	376, 580, 1084, 1087
Bsh1236I	CGCG	1 cut(s)	947
BshFI	GGCC	3 cut(s)	192, 373, 840
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	3 cut(s)	63, 370, 1000
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	4 cut(s)	185, 871, 872, 1006
BsmAI	GTCTC	3 cut(s)	398, 427, 507
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	3 cut(s)	192, 373, 840
Bso31I	GGTCTC	1 cut(s)	507
BsoBI	CYCGRG	1 cut(s)	629
Bsp1286I	GDGCHC	3 cut(s)	171, 180, 1006
Bsp1407I	TGTACA	1 cut(s)	968
Bsp143I	GATC	2 cut(s)	73, 106
BspACI	CCGC	4 cut(s)	54, 189, 623, 945
BspANI	GGCC	3 cut(s)	192, 373, 840
BspCNI	CTCAG	6 cut(s)	166, 274, 326, 400, 784, 1018
BspFNI	CGCG	1 cut(s)	947
BspHI	TCATGA	2 cut(s)	76, 109
BspLI	GGNNCC	1 cut(s)	789
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	1086
BspTNI	GGTCTC	1 cut(s)	507
BsrGI	TGTACA	1 cut(s)	968
BsrI	ACTGG	4 cut(s)	180, 658, 883, 1120
BssMI	GATC	2 cut(s)	73, 106
BssNI	GRCGYC	2 cut(s)	324, 997
BssSI	CACGAG	1 cut(s)	984
Bst2BI	CACGAG	1 cut(s)	984
Bst2UI	CCWGG	1 cut(s)	1106
Bst4CI	ACNGT	2 cut(s)	225, 752
Bst6I	CTCTTC	2 cut(s)	546, 1086
BstACI	GRCGYC	2 cut(s)	324, 997
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstAUI	TGTACA	1 cut(s)	968
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	6 cut(s)	174, 282, 313, 408, 792, 1005
BstF5I	GGATG	5 cut(s)	160, 489, 594, 835, 898
BstFNI	CGCG	1 cut(s)	947
BstHHI	GCGC	1 cut(s)	1028
BstKTI	GATC	2 cut(s)	76, 109
BstMAI	GTCTC	3 cut(s)	398, 427, 507
BstMBI	GATC	2 cut(s)	73, 106
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 1034
BstNI	CCWGG	1 cut(s)	1106
BstNSI	RCATGY	2 cut(s)	275, 475
BstSCI	CCNGG	2 cut(s)	999, 1104
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	1 cut(s)	947
BstV1I	GCAGC	4 cut(s)	376, 580, 1084, 1087
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	3 cut(s)	192, 373, 840
BtsCI	GGATG	5 cut(s)	160, 489, 594, 835, 898
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	279, 447
Cac8I	GCNNGC	1 cut(s)	273
CaiI	CAGNNNCTG	1 cut(s)	1034
CciI	TCATGA	2 cut(s)	76, 109
CfoI	GCGC	1 cut(s)	1028
CseI	GACGC	1 cut(s)	1005
Csp6I	GTAC	1 cut(s)	969
CviAII	CATG	9 cut(s)	67, 77, 94, 110, 136, 194, 272, 472, 557
CviQI	GTAC	1 cut(s)	969
DdeI	CTNAG	6 cut(s)	174, 282, 313, 408, 792, 1005
DpnI	GATC	2 cut(s)	75, 108
DpnII	GATC	2 cut(s)	73, 106
EaeI	YGGCCR	3 cut(s)	190, 371, 838
Eam1104I	CTCTTC	2 cut(s)	546, 1086
EarI	CTCTTC	2 cut(s)	546, 1086
Eco24I	GRGCYC	2 cut(s)	180, 1006
Eco31I	GGTCTC	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	703
Eco88I	CYCGRG	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	1104
EcoRV	GATATC	1 cut(s)	703
EcoT22I	ATGCAT	1 cut(s)	277
EcoT38I	GRGCYC	2 cut(s)	180, 1006
FaeI	CATG	9 cut(s)	70, 80, 97, 113, 139, 197, 275, 475, 560
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	9 cut(s)	66, 76, 93, 109, 135, 193, 271, 471, 556
FbaI	TGATCA	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	7 cut(s)	190, 390, 569, 624, 945, 1073, 1076
FokI	GGATG	5 cut(s)	167, 496, 581, 842, 905
FriOI	GRGCYC	2 cut(s)	180, 1006
Fsp4HI	GCNGC	7 cut(s)	190, 390, 569, 624, 945, 1073, 1076
FspBI	CTAG	2 cut(s)	978, 993
GlaI	GCGC	1 cut(s)	1027
GluI	GCNGC	7 cut(s)	190, 390, 569, 624, 945, 1073, 1076
HaeIII	GGCC	3 cut(s)	192, 373, 840
HapII	CCGG	3 cut(s)	63, 370, 1000
HgaI	GACGC	1 cut(s)	1005
HhaI	GCGC	1 cut(s)	1028
Hin1I	GRCGYC	2 cut(s)	324, 997
Hin1II	CATG	9 cut(s)	70, 80, 97, 113, 139, 197, 275, 475, 560
Hin6I	GCGC	1 cut(s)	1026
HinP1I	GCGC	1 cut(s)	1026
HincII	GTYRAC	2 cut(s)	760, 847
HindII	GTYRAC	2 cut(s)	760, 847
HindIII	AAGCTT	2 cut(s)	114, 1013
HinfI	GANTC	6 cut(s)	29, 59, 538, 914, 926, 974
HpaII	CCGG	3 cut(s)	63, 370, 1000
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	5 cut(s)	447, 469, 760, 847, 983
Hpy188I	TCNGA	7 cut(s)	34, 91, 133, 175, 546, 724, 822
Hpy188III	TCNNGA	5 cut(s)	77, 110, 631, 776, 984
Hpy8I	GTNNAC	5 cut(s)	447, 469, 760, 847, 983
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	2 cut(s)	452, 729
HpyCH4III	ACNGT	2 cut(s)	225, 752
HpyCH4IV	ACGT	2 cut(s)	324, 635
HpyCH4V	TGCA	7 cut(s)	254, 275, 452, 568, 767, 833, 907
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 1034
HpyF3I	CTNAG	6 cut(s)	174, 282, 313, 408, 792, 1005
HpySE526I	ACGT	2 cut(s)	324, 635
Hsp92I	GRCGYC	2 cut(s)	324, 997
Hsp92II	CATG	9 cut(s)	70, 80, 97, 113, 139, 197, 275, 475, 560
HspAI	GCGC	1 cut(s)	1026
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	73, 106
LguI	GCTCTTC	1 cut(s)	1086
LmnI	GCTCC	2 cut(s)	1042, 1083
Lsp1109I	GCAGC	4 cut(s)	376, 580, 1084, 1087
LweI	GCATC	4 cut(s)	263, 376, 715, 820
MaeI	CTAG	2 cut(s)	978, 993
MaeII	ACGT	2 cut(s)	324, 635
MalI	GATC	2 cut(s)	75, 108
MboI	GATC	2 cut(s)	73, 106
MboII	GAAGA	4 cut(s)	467, 533, 921, 1103
MhlI	GDGCHC	3 cut(s)	171, 180, 1006
MlsI	TGGCCA	1 cut(s)	840
MluCI	AATT	6 cut(s)	413, 478, 563, 813, 857, 1122
MluNI	TGGCCA	1 cut(s)	840
MlyI	GAGTC	3 cut(s)	53, 532, 923
MmeI	TCCRAC	1 cut(s)	597
Mox20I	TGGCCA	1 cut(s)	840
Mph1103I	ATGCAT	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	840
MseI	TTAA	2 cut(s)	647, 870
MslI	CAYNNNNRTG	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	840
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	3 cut(s)	63, 370, 1000
MspR9I	CCNGG	2 cut(s)	1001, 1106
MvaI	CCWGG	1 cut(s)	1106
MvnI	CGCG	1 cut(s)	947
MwoI	GCNNNNNNNGC	2 cut(s)	175, 1034
NciI	CCSGG	1 cut(s)	1001
NdeII	GATC	2 cut(s)	73, 106
NlaIII	CATG	9 cut(s)	70, 80, 97, 113, 139, 197, 275, 475, 560
NlaIV	GGNNCC	1 cut(s)	789
NmeAIII	GCCGAG	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	2 cut(s)	275, 475
PaeI	GCATGC	1 cut(s)	275
PagI	TCATGA	2 cut(s)	76, 109
PciSI	GCTCTTC	1 cut(s)	1086
PfeI	GAWTC	3 cut(s)	29, 926, 974
PkrI	GCNGC	7 cut(s)	191, 391, 570, 625, 946, 1074, 1077
PleI	GAGTC	3 cut(s)	53, 532, 922
PpsI	GAGTC	3 cut(s)	53, 532, 922
Psp6I	CCWGG	1 cut(s)	1104
PspGI	CCWGG	1 cut(s)	1104
PspN4I	GGNNCC	1 cut(s)	789
PstI	CTGCAG	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	1034
RsaI	GTAC	1 cut(s)	970
RsaNI	GTAC	1 cut(s)	969
RseI	CAYNNNNRTG	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	1086
SaqAI	TTAA	2 cut(s)	647, 870
SatI	GCNGC	7 cut(s)	190, 390, 569, 624, 945, 1073, 1076
Sau3AI	GATC	2 cut(s)	73, 106
SchI	GAGTC	3 cut(s)	53, 532, 923
ScrFI	CCNGG	2 cut(s)	1001, 1106
SduI	GDGCHC	3 cut(s)	171, 180, 1006
SfaNI	GCATC	4 cut(s)	263, 376, 715, 820
SfcI	CTRYAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	198
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	6 cut(s)	413, 478, 563, 813, 857, 1122
SsiI	CCGC	4 cut(s)	54, 189, 623, 945
SspMI	CTAG	2 cut(s)	978, 993
StyD4I	CCNGG	2 cut(s)	999, 1104
TaaI	ACNGT	2 cut(s)	225, 752
TaiI	ACGT	2 cut(s)	327, 638
TaqI	TCGA	3 cut(s)	321, 363, 741
TasI	AATT	6 cut(s)	413, 478, 563, 813, 857, 1122
TatI	WGTACW	1 cut(s)	968
TauI	GCSGC	3 cut(s)	192, 626, 947
TfiI	GAWTC	3 cut(s)	29, 926, 974
Tru1I	TTAA	2 cut(s)	647, 870
Tru9I	TTAA	2 cut(s)	647, 870
TscAI	CASTG	2 cut(s)	286, 454
TseI	GCWGC	4 cut(s)	389, 568, 1072, 1075
TspDTI	ATGAA	5 cut(s)	27, 126, 210, 512, 798
TspRI	CASTG	2 cut(s)	286, 454
XapI	RAATTY	3 cut(s)	413, 857, 1122
XceI	RCATGY	2 cut(s)	275, 475
XmiI	GTMKAC	1 cut(s)	468
XspI	CTAG	2 cut(s)	978, 993
ZraI	GACGTC	1 cut(s)	325
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.