Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Forward (+)

23801193 .. 23804746

Gene Structure 3554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGACTCCTCCAACGCCCCACCTTCAGCTAATGGTCCTCCCCCAAAACCGTGGGAGAGAGCAGGCTCATCATCGGGTCCTGCACCTTTCAAACCCCCATCAGCTGGAAGCACAAGTGATGTAGTGGAGGCTTCAGGAACTGCTAGACCTGGAGAAATAGTATCAAGTGCTGACAGAAGTACCCCTAATAATAGAAATACTCTCGGTAGGCCTGTTCCCTCTAGGCCTTGGGAGCAGAACTATGGAAGTAGCAACACTTATGGAGGTTATGGAACTGGAATGTCCGGAGTGACTGGAATGTCTGGGACGTATGGTTCTTATGGTGGAACTGGAGGATTATATGGTGGAACTGGAGGACTATATGGAGGAGGGATGTATGGCAACAGCATGTATAGGGGAGGGTATGGTGGGGCAGGTGGGCTTTATGGTGGGTCATCTGGGATGTATGGAGCTGGGTCGATGTATGGAGGTGGAATGTACAATAGTGGTATGGGAGGCCCAATGGGTGGTTATGGAATGGGCATGGGTGGTCCTTATGGAGGTCAAGATCCAAATGATCCATACGGTGCTCCTCCATCTGCGCCAGGGTTTTGGGTTTCCGCACTCCATGTGCTGCAAGGTGTGGTAAGCTTTTTCGGTCGGATTGCAATTCTGATAGACCAAAACACCCAGGCTTTCCACTTGTTCATGACCGCTCTACTTCAGCTTTTTGATCGCTCTGGTCTATTATACGGTGAGCTAGCTAGGTTTGTATTGAGGATATTGGGAGTCAGAACAAAACCCAAGATGGGCCCTCCATCAGGTCCCAATGGGCTCCCGTTCCATGGGCCAAACGGTGCACCTGAGAACCGAAACTATATCGAGGGACCAAAGGCCGCTCCTAGTGGCTCCTGGGATAATGTTTGGGGAAATGATACCAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

31.38

Weight (kDa)

8.94

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	404
AasI	GACNNNNNNGTC	1 cut(s)	298
Acc36I	ACCTGC	1 cut(s)	404
AccB7I	CCANNNNNTGG	2 cut(s)	104, 506
AccBSI	CCGCTC	2 cut(s)	695, 878
AccIII	TCCGGA	1 cut(s)	284
AciI	CCGC	3 cut(s)	600, 693, 876
AclWI	GGATC	2 cut(s)	542, 551
AcuI	CTGAAG	3 cut(s)	9, 117, 686
AfaI	GTAC	2 cut(s)	181, 479
AfiI	CCNNNNNNNGG	6 cut(s)	104, 506, 539, 788, 800, 824
AgsI	TTSAA	1 cut(s)	91
AjnI	CCWGG	4 cut(s)	148, 583, 669, 890
AloI	GAACNNNNNNTCC	2 cut(s)	298, 330
AluBI	AGCT	7 cut(s)	29, 104, 452, 630, 706, 739, 743
AluI	AGCT	7 cut(s)	29, 104, 452, 630, 706, 739, 743
Alw21I	GWGCWC	2 cut(s)	571, 841
Alw44I	GTGCAC	1 cut(s)	837
AlwI	GGATC	2 cut(s)	542, 551
AlwNI	CAGNNNCTG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	284
AoxI	GGCC	6 cut(s)	209, 224, 496, 790, 827, 873
ApaI	GGGCCC	1 cut(s)	794
ApaLI	GTGCAC	1 cut(s)	837
ApeKI	GCWGC	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	9 cut(s)	35, 77, 497, 530, 790, 791, 803, 827, 866
AsuHPI	GGTGA	1 cut(s)	746
AsuNHI	GCTAGC	1 cut(s)	739
AvaII	GGWCC	5 cut(s)	35, 77, 530, 803, 866
BaeGI	GKGCMC	2 cut(s)	794, 841
BaeI	ACNNNNGTAYC	2 cut(s)	163, 196
BanII	GRGCYC	2 cut(s)	794, 816
Bbv12I	GWGCWC	2 cut(s)	571, 841
BbvI	GCAGC	1 cut(s)	600
BccI	CCATC	4 cut(s)	106, 583, 781, 805
BciT130I	CCWGG	4 cut(s)	150, 585, 671, 892
BfaI	CTAG	5 cut(s)	144, 222, 740, 744, 882
BfuAI	ACCTGC	1 cut(s)	404
BisI	GCNGC	2 cut(s)	614, 876
BlsI	GCNGC	2 cut(s)	615, 877
Bme1390I	CCNGG	4 cut(s)	150, 585, 671, 892
Bme18I	GGWCC	5 cut(s)	35, 77, 530, 803, 866
BmgT120I	GGNCC	9 cut(s)	35, 77, 497, 530, 790, 791, 803, 827, 866
BmiI	GGNNCC	6 cut(s)	78, 792, 805, 815, 867, 889
BmrFI	CCNGG	4 cut(s)	150, 585, 671, 892
BmtI	GCTAGC	1 cut(s)	743
BpmI	CTGGAG	3 cut(s)	171, 351, 372
BsaJI	CCNNGG	6 cut(s)	50, 227, 584, 669, 823, 891
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	6 cut(s)	104, 506, 539, 788, 800, 824
Bse1I	ACTGG	5 cut(s)	280, 298, 334, 355, 918
BseAI	TCCGGA	1 cut(s)	284
BseBI	CCWGG	4 cut(s)	150, 585, 671, 892
BseDI	CCNNGG	6 cut(s)	50, 227, 584, 669, 823, 891
BseGI	GGATG	2 cut(s)	378, 447
BseLI	CCNNNNNNNGG	6 cut(s)	104, 506, 539, 788, 800, 824
BseMII	CTCAG	1 cut(s)	834
BseNI	ACTGG	5 cut(s)	280, 298, 334, 355, 918
BseRI	GAGGAG	2 cut(s)	381, 561
BseSI	GKGCMC	2 cut(s)	794, 841
BseXI	GCAGC	1 cut(s)	600
BseYI	CCCAGC	1 cut(s)	452
BsgI	GTGCAG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	640
BshFI	GGCC	6 cut(s)	211, 226, 498, 792, 829, 875
BsiEI	CGRYCG	1 cut(s)	640
BsiHKAI	GWGCWC	2 cut(s)	571, 841
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	3 cut(s)	319, 789, 879
BslI	CCNNNNNNNGG	6 cut(s)	104, 506, 539, 788, 800, 824
BsmFI	GGGAC	3 cut(s)	319, 789, 879
BsnI	GGCC	6 cut(s)	211, 226, 498, 792, 829, 875
Bsp120I	GGGCCC	1 cut(s)	790
Bsp1286I	GDGCHC	4 cut(s)	571, 794, 816, 841
Bsp13I	TCCGGA	1 cut(s)	284
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	547, 556, 712
Bsp19I	CCATGG	1 cut(s)	823
BspACI	CCGC	3 cut(s)	600, 693, 876
BspANI	GGCC	6 cut(s)	211, 226, 498, 792, 829, 875
BspCNI	CTCAG	1 cut(s)	835
BspEI	TCCGGA	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	687
BspLI	GGNNCC	6 cut(s)	78, 792, 805, 815, 867, 889
BspMI	ACCTGC	1 cut(s)	404
BspOI	GCTAGC	1 cut(s)	743
BspPI	GGATC	2 cut(s)	542, 551
BsrBI	CCGCTC	2 cut(s)	695, 878
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	5 cut(s)	280, 298, 334, 355, 918
BssECI	CCNNGG	6 cut(s)	50, 227, 584, 669, 823, 891
BssMI	GATC	3 cut(s)	547, 556, 712
BssT1I	CCWWGG	2 cut(s)	227, 823
Bst2UI	CCWGG	4 cut(s)	150, 585, 671, 892
Bst4CI	ACNGT	4 cut(s)	51, 566, 734, 836
BstAUI	TGTACA	1 cut(s)	477
BstC8I	GCNNGC	2 cut(s)	64, 741
BstDEI	CTNAG	1 cut(s)	843
BstDSI	CCRYGG	2 cut(s)	50, 823
BstENI	CCTNNNNNAGG	2 cut(s)	537, 798
BstF5I	GGATG	2 cut(s)	378, 447
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	3 cut(s)	550, 559, 715
BstMBI	GATC	3 cut(s)	547, 556, 712
BstMCI	CGRYCG	1 cut(s)	640
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstNI	CCWGG	4 cut(s)	150, 585, 671, 892
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	4 cut(s)	148, 583, 669, 890
BstSLI	GKGCMC	2 cut(s)	794, 841
BstV1I	GCAGC	1 cut(s)	600
BstX2I	RGATCY	1 cut(s)	547
BstXI	CCANNNNNNTGG	2 cut(s)	51, 591
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	6 cut(s)	211, 226, 498, 792, 829, 875
BtgI	CCRYGG	2 cut(s)	50, 823
BtsCI	GGATG	2 cut(s)	378, 447
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	64, 741
CaiI	CAGNNNCTG	1 cut(s)	140
CciI	TCATGA	1 cut(s)	687
CfoI	GCGC	1 cut(s)	583
Cfr13I	GGNCC	9 cut(s)	35, 77, 497, 530, 790, 791, 803, 827, 866
Csp6I	GTAC	2 cut(s)	180, 478
CviAII	CATG	5 cut(s)	388, 523, 608, 688, 824
CviQI	GTAC	2 cut(s)	180, 478
DdeI	CTNAG	1 cut(s)	843
DpnI	GATC	3 cut(s)	549, 558, 714
DpnII	GATC	3 cut(s)	547, 556, 712
DrdI	GACNNNNNNGTC	1 cut(s)	298
DseDI	GACNNNNNNGTC	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	227, 823
Eco147I	AGGCCT	2 cut(s)	211, 226
Eco24I	GRGCYC	2 cut(s)	794, 816
Eco47I	GGWCC	5 cut(s)	35, 77, 530, 803, 866
Eco57I	CTGAAG	3 cut(s)	9, 117, 686
EcoNI	CCTNNNNNAGG	2 cut(s)	537, 798
EcoO109I	RGGNCCY	3 cut(s)	77, 791, 803
EcoRII	CCWGG	4 cut(s)	148, 583, 669, 890
EcoT14I	CCWWGG	2 cut(s)	227, 823
EcoT38I	GRGCYC	2 cut(s)	794, 816
ErhI	CCWWGG	2 cut(s)	227, 823
FaeI	CATG	5 cut(s)	391, 526, 611, 691, 827
FaqI	GGGAC	3 cut(s)	319, 789, 879
FatI	CATG	5 cut(s)	387, 522, 607, 687, 823
Fnu4HI	GCNGC	2 cut(s)	614, 876
FokI	GGATG	2 cut(s)	385, 454
FriOI	GRGCYC	2 cut(s)	794, 816
Fsp4HI	GCNGC	2 cut(s)	614, 876
FspBI	CTAG	5 cut(s)	144, 222, 740, 744, 882
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	2 cut(s)	614, 876
GsaI	CCCAGC	1 cut(s)	456
GsuI	CTGGAG	3 cut(s)	171, 351, 372
HaeIII	GGCC	6 cut(s)	211, 226, 498, 792, 829, 875
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	5 cut(s)	391, 526, 611, 691, 827
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HindIII	AAGCTT	1 cut(s)	628
HinfI	GANTC	2 cut(s)	5, 768
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	746
Hpy166II	GTNNAC	1 cut(s)	839
Hpy188I	TCNGA	3 cut(s)	642, 654, 773
Hpy188III	TCNNGA	4 cut(s)	135, 285, 545, 688
Hpy8I	GTNNAC	1 cut(s)	839
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	4 cut(s)	51, 566, 734, 836
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	4 cut(s)	83, 616, 647, 839
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	1 cut(s)	843
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	5 cut(s)	391, 526, 611, 691, 827
HspAI	GCGC	1 cut(s)	581
Kpn2I	TCCGGA	1 cut(s)	284
Kzo9I	GATC	3 cut(s)	547, 556, 712
LmnI	GCTCC	6 cut(s)	232, 449, 574, 819, 883, 893
Lsp1109I	GCAGC	1 cut(s)	600
MaeI	CTAG	5 cut(s)	144, 222, 740, 744, 882
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	3 cut(s)	549, 558, 714
MbiI	CCGCTC	2 cut(s)	695, 878
MboI	GATC	3 cut(s)	547, 556, 712
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	4 cut(s)	571, 794, 816, 841
MluCI	AATT	1 cut(s)	648
MlyI	GAGTC	1 cut(s)	777
MmeI	TCCRAC	2 cut(s)	36, 620
MroI	TCCGGA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	4 cut(s)	150, 585, 671, 892
MvaI	CCWGG	4 cut(s)	150, 585, 671, 892
MwoI	GCNNNNNNNGC	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	823
NdeII	GATC	3 cut(s)	547, 556, 712
NheI	GCTAGC	1 cut(s)	739
NlaIII	CATG	5 cut(s)	391, 526, 611, 691, 827
NlaIV	GGNNCC	6 cut(s)	78, 792, 805, 815, 867, 889
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	391
PagI	TCATGA	1 cut(s)	687
PaqCI	CACCTGC	1 cut(s)	404
PceI	AGGCCT	2 cut(s)	211, 226
PflMI	CCANNNNNTGG	2 cut(s)	104, 506
PkrI	GCNGC	2 cut(s)	615, 877
PleI	GAGTC	1 cut(s)	776
PpsI	GAGTC	1 cut(s)	776
PpuMI	RGGWCCY	2 cut(s)	77, 803
Psp5II	RGGWCCY	2 cut(s)	77, 803
Psp6I	CCWGG	4 cut(s)	148, 583, 669, 890
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	4 cut(s)	148, 583, 669, 890
PspN4I	GGNNCC	6 cut(s)	78, 792, 805, 815, 867, 889
PspOMI	GGGCCC	1 cut(s)	790
PspPI	GGNCC	9 cut(s)	35, 77, 497, 530, 790, 791, 803, 827, 866
PspPPI	RGGWCCY	2 cut(s)	77, 803
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	547
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	181, 479
RsaNI	GTAC	2 cut(s)	180, 478
SatI	GCNGC	2 cut(s)	614, 876
Sau3AI	GATC	3 cut(s)	547, 556, 712
Sau96I	GGNCC	9 cut(s)	35, 77, 497, 530, 790, 791, 803, 827, 866
SchI	GAGTC	1 cut(s)	777
ScrFI	CCNGG	4 cut(s)	150, 585, 671, 892
SduI	GDGCHC	4 cut(s)	571, 794, 816, 841
SinI	GGWCC	5 cut(s)	35, 77, 530, 803, 866
Sse9I	AATT	1 cut(s)	648
SseBI	AGGCCT	2 cut(s)	211, 226
SsiI	CCGC	3 cut(s)	600, 693, 876
SspMI	CTAG	5 cut(s)	144, 222, 740, 744, 882
StuI	AGGCCT	2 cut(s)	211, 226
StyD4I	CCNGG	4 cut(s)	148, 583, 669, 890
StyI	CCWWGG	2 cut(s)	227, 823
TaaI	ACNGT	4 cut(s)	51, 566, 734, 836
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	2 cut(s)	458, 861
TaqII	GACCGA	1 cut(s)	626
TasI	AATT	1 cut(s)	648
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	1 cut(s)	878
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	613
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	676
Van91I	CCANNNNNTGG	2 cut(s)	104, 506
VneI	GTGCAC	1 cut(s)	837
VpaK11BI	GGWCC	5 cut(s)	35, 77, 530, 803, 866
XagI	CCTNNNNNAGG	2 cut(s)	537, 798
XceI	RCATGY	1 cut(s)	391
XspI	CTAG	5 cut(s)	144, 222, 740, 744, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.