Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Forward (+)

57810125 .. 57812892

Gene Structure 2768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG411300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGACTCCAAGCCCCAACCTTCAGCTAATGGTCCTCCCCCAAAGCCGTGGGACAGAGCAGGCTCCTCATCTGGTCCTGCACCTTTTAAACCCTCATCAGCTGGTAGCACAAGTGATGTAGTGGAGGCTTCAGGAACTGCTAGACCTGGAGAAATAGTATCAAGTGCTGATAAAAGTGCCCCTAATAACAGAAATACTCTTGGTAGGCCTGTTCCCTCTAGGCCTTGGGAGCAGAACTATGGAAGTAGCAACACTTATGGAGTAAACTCAGGTTATGGCTCTGGAATGTCTGGAATGACCGGAATGTCTGGAACATATGGTTCATACGGTGGAACTGGAGGATTATACGGTGGAACTGGAGGGATGTATGGTGGAGGGATGTATGGCAACAGCATGTATAGGGGAGGGTATGGTGGGCTTTATGGTGGGTCTTCTGGGATGTATGGAGCTGGGTCTTCTGGGATGTACGGAGGTGGAATGTACAATAGTGGTATGGGAGGCCCAATGGGTGGTTATGGAATGGGCATGGGTGGTCCTTATGGAGGTCAAGATCCAAATGATCCATACGGTGCTCCTCCATCTGCACCAGGGTTTTGGGTTTCAGCACTCCATGTGCTGCAAGGTGTGGTCAGCTTTTTCGGTCGGATTGCAATTCTGATAGACCAAAACACCCAGGCATTCCATTTGTTCATGACCGCTCTACTTCAGCTTTTTGATCGCTCTGGTCTATTGTACGGAGAGCTAGCTAGGTTTGTATTGAGGATATTGGGAGTCAGAACAAAACCCAAGATGGGCCCTCCAGCAGGTCCCAATGGGATTCCGTTCCCTGGGCCTGGCGGTCCCCATGAGAACCGAAATTACATTGAGGGATCGAAGGCCGCTCCTAGTGGTTCCTGGGATAATGTTTGGGGAAATGATACCGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

31.49

Weight (kDa)

9.1

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	304
Acc36I	ACCTGC	1 cut(s)	794
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccBSI	CCGCTC	2 cut(s)	698, 881
AciI	CCGC	3 cut(s)	696, 837, 879
AclWI	GGATC	3 cut(s)	545, 554, 877
AcuI	CTGAAG	3 cut(s)	6, 114, 689
AfaI	GTAC	3 cut(s)	467, 482, 734
AfiI	CCNNNNNNNGG	6 cut(s)	509, 542, 791, 803, 827, 833
AgeI	ACCGGT	1 cut(s)	920
AjnI	CCWGG	6 cut(s)	145, 586, 672, 826, 832, 893
AluBI	AGCT	7 cut(s)	26, 101, 449, 633, 709, 742, 746
AluI	AGCT	7 cut(s)	26, 101, 449, 633, 709, 742, 746
Alw21I	GWGCWC	1 cut(s)	574
AlwI	GGATC	3 cut(s)	545, 554, 877
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	6 cut(s)	206, 221, 499, 793, 830, 876
ApaI	GGGCCC	1 cut(s)	797
ApeKI	GCWGC	1 cut(s)	616
AsiGI	ACCGGT	1 cut(s)	920
AspS9I	GGNCC	9 cut(s)	32, 74, 500, 533, 793, 794, 806, 830, 839
AsuNHI	GCTAGC	1 cut(s)	742
AvaII	GGWCC	5 cut(s)	32, 74, 533, 806, 839
BaeGI	GKGCMC	2 cut(s)	181, 797
BanII	GRGCYC	1 cut(s)	797
BbsI	GAAGAC	2 cut(s)	423, 447
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	1 cut(s)	603
BccI	CCATC	2 cut(s)	586, 784
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	6 cut(s)	147, 588, 674, 828, 834, 895
BfaI	CTAG	5 cut(s)	141, 219, 743, 747, 885
BfuAI	ACCTGC	1 cut(s)	794
BisI	GCNGC	2 cut(s)	617, 879
BlsI	GCNGC	2 cut(s)	618, 880
Bme1390I	CCNGG	6 cut(s)	147, 588, 674, 828, 834, 895
Bme18I	GGWCC	5 cut(s)	32, 74, 533, 806, 839
BmgT120I	GGNCC	9 cut(s)	32, 74, 500, 533, 793, 794, 806, 830, 839
BmiI	GGNNCC	5 cut(s)	64, 795, 808, 841, 892
BmrFI	CCNGG	6 cut(s)	147, 588, 674, 828, 834, 895
BmtI	GCTAGC	1 cut(s)	746
BpiI	GAAGAC	2 cut(s)	423, 447
BpmI	CTGGAG	4 cut(s)	168, 357, 378, 783
BsaJI	CCNNGG	7 cut(s)	47, 224, 587, 672, 826, 827, 894
BsaWI	WCCGGW	2 cut(s)	299, 920
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	6 cut(s)	509, 542, 791, 803, 827, 833
Bse118I	RCCGGY	1 cut(s)	920
Bse1I	ACTGG	2 cut(s)	340, 361
BseBI	CCWGG	6 cut(s)	147, 588, 674, 828, 834, 895
BseDI	CCNNGG	7 cut(s)	47, 224, 587, 672, 826, 827, 894
BseGI	GGATG	4 cut(s)	369, 384, 444, 468
BseLI	CCNNNNNNNGG	6 cut(s)	509, 542, 791, 803, 827, 833
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	340, 361
BseRI	GAGGAG	2 cut(s)	55, 564
BseSI	GKGCMC	2 cut(s)	181, 797
BseXI	GCAGC	1 cut(s)	603
BseYI	CCCAGC	1 cut(s)	449
BsgI	GTGCAG	2 cut(s)	63, 567
Bsh1285I	CGRYCG	1 cut(s)	643
BshFI	GGCC	6 cut(s)	208, 223, 501, 795, 832, 878
BshTI	ACCGGT	1 cut(s)	920
BsiEI	CGRYCG	1 cut(s)	643
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	2 cut(s)	300, 921
BslFI	GGGAC	3 cut(s)	65, 792, 825
BslI	CCNNNNNNNGG	6 cut(s)	509, 542, 791, 803, 827, 833
BsmFI	GGGAC	3 cut(s)	65, 792, 825
BsmI	GAATGC	1 cut(s)	677
BsnI	GGCC	6 cut(s)	208, 223, 501, 795, 832, 878
Bsp120I	GGGCCC	1 cut(s)	793
Bsp1286I	GDGCHC	3 cut(s)	181, 574, 797
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	4 cut(s)	550, 559, 715, 869
BspACI	CCGC	3 cut(s)	696, 837, 879
BspANI	GGCC	6 cut(s)	208, 223, 501, 795, 832, 878
BspCNI	CTCAG	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	690
BspLI	GGNNCC	5 cut(s)	64, 795, 808, 841, 892
BspMI	ACCTGC	1 cut(s)	794
BspOI	GCTAGC	1 cut(s)	746
BspPI	GGATC	3 cut(s)	545, 554, 877
BsrBI	CCGCTC	2 cut(s)	698, 881
BsrFI	RCCGGY	1 cut(s)	920
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	2 cut(s)	340, 361
BssAI	RCCGGY	1 cut(s)	920
BssECI	CCNNGG	7 cut(s)	47, 224, 587, 672, 826, 827, 894
BssMI	GATC	4 cut(s)	550, 559, 715, 869
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	6 cut(s)	147, 588, 674, 828, 834, 895
Bst4CI	ACNGT	3 cut(s)	329, 350, 569
BstAUI	TGTACA	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	61, 744
BstDEI	CTNAG	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	47
BstENI	CCTNNNNNAGG	2 cut(s)	540, 801
BstF5I	GGATG	4 cut(s)	369, 384, 444, 468
BstKTI	GATC	4 cut(s)	553, 562, 718, 872
BstMBI	GATC	4 cut(s)	550, 559, 715, 869
BstMCI	CGRYCG	1 cut(s)	643
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNI	CCWGG	6 cut(s)	147, 588, 674, 828, 834, 895
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	6 cut(s)	145, 586, 672, 826, 832, 893
BstSLI	GKGCMC	2 cut(s)	181, 797
BstV1I	GCAGC	1 cut(s)	603
BstV2I	GAAGAC	2 cut(s)	423, 447
BstX2I	RGATCY	1 cut(s)	550
BstXI	CCANNNNNNTGG	2 cut(s)	48, 594
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	6 cut(s)	208, 223, 501, 795, 832, 878
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	369, 384, 444, 468
BveI	ACCTGC	1 cut(s)	794
Cac8I	GCNNGC	2 cut(s)	61, 744
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	1 cut(s)	690
Cfr10I	RCCGGY	1 cut(s)	920
Cfr13I	GGNCC	9 cut(s)	32, 74, 500, 533, 793, 794, 806, 830, 839
Csp6I	GTAC	3 cut(s)	466, 481, 733
CspAI	ACCGGT	1 cut(s)	920
CviAII	CATG	5 cut(s)	394, 526, 611, 691, 845
CviQI	GTAC	3 cut(s)	466, 481, 733
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	4 cut(s)	552, 561, 717, 871
DpnII	GATC	4 cut(s)	550, 559, 715, 869
DraI	TTTAAA	1 cut(s)	88
DrdI	GACNNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	224
Eco147I	AGGCCT	2 cut(s)	208, 223
Eco24I	GRGCYC	1 cut(s)	797
Eco47I	GGWCC	5 cut(s)	32, 74, 533, 806, 839
Eco57I	CTGAAG	3 cut(s)	6, 114, 689
EcoNI	CCTNNNNNAGG	2 cut(s)	540, 801
EcoO109I	RGGNCCY	2 cut(s)	794, 806
EcoRII	CCWGG	6 cut(s)	145, 586, 672, 826, 832, 893
EcoT14I	CCWWGG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	797
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	5 cut(s)	397, 529, 614, 694, 848
FaqI	GGGAC	3 cut(s)	65, 792, 825
FatI	CATG	5 cut(s)	393, 525, 610, 690, 844
FauNDI	CATATG	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	617, 879
FokI	GGATG	4 cut(s)	376, 391, 451, 475
FriOI	GRGCYC	1 cut(s)	797
Fsp4HI	GCNGC	2 cut(s)	617, 879
FspBI	CTAG	5 cut(s)	141, 219, 743, 747, 885
GluI	GCNGC	2 cut(s)	617, 879
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	4 cut(s)	168, 357, 378, 783
HaeIII	GGCC	6 cut(s)	208, 223, 501, 795, 832, 878
HapII	CCGG	2 cut(s)	300, 921
Hin1II	CATG	5 cut(s)	397, 529, 614, 694, 848
HinfI	GANTC	3 cut(s)	5, 771, 817
HpaII	CCGG	2 cut(s)	300, 921
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	3 cut(s)	645, 657, 776
Hpy188III	TCNNGA	6 cut(s)	132, 282, 291, 309, 548, 691
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	30, 868
HpyCH4III	ACNGT	3 cut(s)	329, 350, 569
HpyCH4V	TGCA	4 cut(s)	80, 584, 619, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	1 cut(s)	268
Hsp92II	CATG	5 cut(s)	397, 529, 614, 694, 848
Kzo9I	GATC	4 cut(s)	550, 559, 715, 869
LmnI	GCTCC	5 cut(s)	68, 229, 446, 577, 886
Lsp1109I	GCAGC	1 cut(s)	603
MaeI	CTAG	5 cut(s)	141, 219, 743, 747, 885
MalI	GATC	4 cut(s)	552, 561, 717, 871
MbiI	CCGCTC	2 cut(s)	698, 881
MboI	GATC	4 cut(s)	550, 559, 715, 869
MboII	GAAGA	2 cut(s)	423, 447
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	3 cut(s)	181, 574, 797
MluCI	AATT	2 cut(s)	651, 856
MlyI	GAGTC	1 cut(s)	780
MmeI	TCCRAC	1 cut(s)	623
MseI	TTAA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	2 cut(s)	300, 921
MspR9I	CCNGG	6 cut(s)	147, 588, 674, 828, 834, 895
Mva1269I	GAATGC	1 cut(s)	677
MvaI	CCWGG	6 cut(s)	147, 588, 674, 828, 834, 895
MwoI	GCNNNNNNNGC	1 cut(s)	229
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	4 cut(s)	550, 559, 715, 869
NheI	GCTAGC	1 cut(s)	742
NlaIII	CATG	5 cut(s)	397, 529, 614, 694, 848
NlaIV	GGNNCC	5 cut(s)	64, 795, 808, 841, 892
NspI	RCATGY	1 cut(s)	397
PagI	TCATGA	1 cut(s)	690
PasI	CCCWGGG	1 cut(s)	827
PceI	AGGCCT	2 cut(s)	208, 223
PctI	GAATGC	1 cut(s)	677
PfeI	GAWTC	1 cut(s)	817
PflMI	CCANNNNNTGG	1 cut(s)	509
PinAI	ACCGGT	1 cut(s)	920
PkrI	GCNGC	2 cut(s)	618, 880
PleI	GAGTC	1 cut(s)	779
PpsI	GAGTC	1 cut(s)	779
PpuMI	RGGWCCY	1 cut(s)	806
Psp5II	RGGWCCY	1 cut(s)	806
Psp6I	CCWGG	6 cut(s)	145, 586, 672, 826, 832, 893
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	6 cut(s)	145, 586, 672, 826, 832, 893
PspN4I	GGNNCC	5 cut(s)	64, 795, 808, 841, 892
PspOMI	GGGCCC	1 cut(s)	793
PspPI	GGNCC	9 cut(s)	32, 74, 500, 533, 793, 794, 806, 830, 839
PspPPI	RGGWCCY	1 cut(s)	806
PsrI	GAACNNNNNNTAC	2 cut(s)	842, 874
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	3 cut(s)	467, 482, 734
RsaNI	GTAC	3 cut(s)	466, 481, 733
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	617, 879
Sau3AI	GATC	4 cut(s)	550, 559, 715, 869
Sau96I	GGNCC	9 cut(s)	32, 74, 500, 533, 793, 794, 806, 830, 839
SchI	GAGTC	1 cut(s)	780
ScrFI	CCNGG	6 cut(s)	147, 588, 674, 828, 834, 895
SduI	GDGCHC	3 cut(s)	181, 574, 797
SinI	GGWCC	5 cut(s)	32, 74, 533, 806, 839
Sse9I	AATT	2 cut(s)	651, 856
SseBI	AGGCCT	2 cut(s)	208, 223
SsiI	CCGC	3 cut(s)	696, 837, 879
SspMI	CTAG	5 cut(s)	141, 219, 743, 747, 885
StuI	AGGCCT	2 cut(s)	208, 223
StyD4I	CCNGG	6 cut(s)	145, 586, 672, 826, 832, 893
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	3 cut(s)	329, 350, 569
TaqI	TCGA	1 cut(s)	872
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	2 cut(s)	651, 856
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	881
TfiI	GAWTC	1 cut(s)	817
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseI	GCWGC	1 cut(s)	616
TspDTI	ATGAA	2 cut(s)	312, 679
TspGWI	ACGGA	3 cut(s)	483, 750, 810
Van91I	CCANNNNNTGG	1 cut(s)	509
VpaK11BI	GGWCC	5 cut(s)	32, 74, 533, 806, 839
XagI	CCTNNNNNAGG	2 cut(s)	540, 801
XceI	RCATGY	1 cut(s)	397
XspI	CTAG	5 cut(s)	141, 219, 743, 747, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.