Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Forward (+)

57820326 .. 57838658

Gene Structure 18333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG411400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGTCAATTTGGAAAGAAGTTATGTCCAAGTGTGCCAAAATTTGGAGAGCAGATCTCCCTCTGAAGAATGGGACTTTGCTTCGGAGCTTTTTGATCACTCTGGTCCATTCTATGGAGAGATAGGTAGGTTTGTATTGAGGACATTGGGAGTCAGAACAAAACCCAAGATGGGACCTCCAGCAGGTCCCGATGGGCTTCCATTCTCTGGGCCTGGCGGTGCACCTGAGAACCGAAACTACATTGAGGGACCAAAGGCCGCTCCAAGTGGTTCCTGGGATAATATTTGGGGAAATGATACCAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.16

Weight (kDa)

5.04

Isoelectric Point (pI)

63.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	173
AccB7I	CCANNNNNTGG	3 cut(s)	43, 113, 206
AccBSI	CCGCTC	1 cut(s)	260
AciI	CCGC	2 cut(s)	216, 258
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	84
AfiI	CCNNNNNNNGG	5 cut(s)	43, 113, 170, 182, 206
AjnI	CCWGG	2 cut(s)	211, 272
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw21I	GWGCWC	1 cut(s)	223
Alw44I	GTGCAC	1 cut(s)	219
AoxI	GGCC	2 cut(s)	209, 255
ApaLI	GTGCAC	1 cut(s)	219
ApoI	RAATTY	1 cut(s)	40
AspS9I	GGNCC	5 cut(s)	104, 173, 185, 209, 248
AvaII	GGWCC	4 cut(s)	104, 173, 185, 248
BaeGI	GKGCMC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	223
BccI	CCATC	2 cut(s)	163, 185
BciT130I	CCWGG	2 cut(s)	213, 274
BclI	TGATCA	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	173
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	213, 274
Bme18I	GGWCC	4 cut(s)	104, 173, 185, 248
BmgT120I	GGNCC	5 cut(s)	104, 173, 185, 209, 248
BmiI	GGNNCC	4 cut(s)	174, 187, 249, 271
BmrFI	CCNGG	2 cut(s)	213, 274
BplI	GAGNNNNNCTC	2 cut(s)	40, 72
BpmI	CTGGAG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 113, 170, 182, 206
Bse1I	ACTGG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	213, 274
BseDI	CCNNGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	5 cut(s)	43, 113, 170, 182, 206
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	300
BseSI	GKGCMC	1 cut(s)	223
BshFI	GGCC	2 cut(s)	211, 257
BsiHKAI	GWGCWC	1 cut(s)	223
BslFI	GGGAC	4 cut(s)	86, 171, 186, 261
BslI	CCNNNNNNNGG	5 cut(s)	43, 113, 170, 182, 206
BsmFI	GGGAC	4 cut(s)	86, 171, 186, 261
BsnI	GGCC	2 cut(s)	211, 257
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	53, 94
BspACI	CCGC	2 cut(s)	216, 258
BspANI	GGCC	2 cut(s)	211, 257
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	4 cut(s)	174, 187, 249, 271
BspMI	ACCTGC	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	53, 94
Bst2UI	CCWGG	2 cut(s)	213, 274
BstDEI	CTNAG	1 cut(s)	225
BstENI	CCTNNNNNAGG	1 cut(s)	180
BstKTI	GATC	2 cut(s)	56, 97
BstMBI	GATC	2 cut(s)	53, 94
BstNI	CCWGG	2 cut(s)	213, 274
BstSCI	CCNGG	2 cut(s)	211, 272
BstSLI	GKGCMC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	211, 257
BveI	ACCTGC	1 cut(s)	173
Cfr13I	GGNCC	5 cut(s)	104, 173, 185, 209, 248
CviJI	RGCY	4 cut(s)	88, 196, 211, 257
CviKI_1	RGCY	4 cut(s)	88, 196, 211, 257
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	2 cut(s)	55, 96
DpnII	GATC	2 cut(s)	53, 94
Eco47I	GGWCC	4 cut(s)	104, 173, 185, 248
Eco57I	CTGAAG	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	180
EcoO109I	RGGNCCY	2 cut(s)	173, 185
EcoRII	CCWGG	2 cut(s)	211, 272
FaiI	YATR	2 cut(s)	24, 114
FaqI	GGGAC	4 cut(s)	86, 171, 186, 261
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	211, 257
HinfI	GANTC	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	3 cut(s)	64, 85, 155
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	225
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	53, 94
LmnI	GCTCC	2 cut(s)	85, 265
LpnPI	CCDG	9 cut(s)	87, 168, 192, 192, 198, 225, 237, 259, 286
MalI	GATC	2 cut(s)	55, 96
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	2 cut(s)	53, 94
MboII	GAAGA	1 cut(s)	77
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	2 cut(s)	7, 40
MlyI	GAGTC	1 cut(s)	159
MnlI	CCTC	4 cut(s)	70, 132, 186, 238
MspR9I	CCNGG	2 cut(s)	213, 274
MvaI	CCWGG	2 cut(s)	213, 274
NdeII	GATC	2 cut(s)	53, 94
NlaIV	GGNNCC	4 cut(s)	174, 187, 249, 271
PflMI	CCANNNNNTGG	3 cut(s)	43, 113, 206
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PpuMI	RGGWCCY	2 cut(s)	173, 185
Psp5II	RGGWCCY	2 cut(s)	173, 185
Psp6I	CCWGG	2 cut(s)	211, 272
PspGI	CCWGG	2 cut(s)	211, 272
PspN4I	GGNNCC	4 cut(s)	174, 187, 249, 271
PspPI	GGNCC	5 cut(s)	104, 173, 185, 209, 248
PspPPI	RGGWCCY	2 cut(s)	173, 185
PsrI	GAACNNNNNNTAC	2 cut(s)	221, 253
PsuI	RGATCY	1 cut(s)	53
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	53, 94
Sau96I	GGNCC	5 cut(s)	104, 173, 185, 209, 248
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	213, 274
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	6 cut(s)	90, 127, 131, 178, 187, 226
SinI	GGWCC	4 cut(s)	104, 173, 185, 248
Sse9I	AATT	2 cut(s)	7, 40
SsiI	CCGC	2 cut(s)	216, 258
SspI	AATATT	1 cut(s)	283
StyD4I	CCNGG	2 cut(s)	211, 272
TasI	AATT	2 cut(s)	7, 40
TauI	GCSGC	1 cut(s)	260
Van91I	CCANNNNNTGG	3 cut(s)	43, 113, 206
VneI	GTGCAC	1 cut(s)	219
VpaK11BI	GGWCC	4 cut(s)	104, 173, 185, 248
XagI	CCTNNNNNAGG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.