Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Reverse (-)

32834123 .. 32838044

Gene Structure 3922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCCGGTAATGGTCCTCCGCCAAAGCCGTGGGAGCAAGCAGGCTCCTCCTCCTCTGGGCCTGCACCTTTTAAACCATCATCAGCTGGAAGCACAAGTGATGTAGTGGAGGCTTCAGGAACTGCTAGACCTGGAGAAATAGTATCAAGTACTGATAGAACCGCCATAATTAATCGAAATACTCTTGGTAGGCCTGTTCCCTCTAGGCCTTGGGTGCAGAACTATGGAAGTAACACATATGGAGGCTATGGTTCTACTACGAACTATAACTCAGGTTATGGCTCTGGAATGACTGGCATATCTGGAATGTATGGCGGTACATATGGTGGCAATGGTGGAGGGATGTATGGCAACAGCATGTATACCGGAGGATATGGTGGGCTTTATGGTGGATCTTCTGGGATGTACGGGGCTGGGTCTTCTGGGATGTATGGTGGTGGAATGTACAATAGTGGCATGGGAGGCCCAATGGGTGGCTATGGAATGGGCATGGGTGGTCCTTATGGAGGTCAAGATCCAAATGATCCATATGGTGGTCCTCCATCTCCACCAGGGTTTTGGGTTTCAGTACTTCGGGTGATGCAAGGTGTGGTTAACTTTTTCGGTCGGATTGCAATTCTAATAGACCAGAATACACAGGCATTGCATTTGTTCATGACTGCTCTTCTTCAGCTTTTTGATCGCTCTGGTATTTTGTATGGGGAGCTAGCTAGGTTTGTATTCAGAATATTGGGAATCAGAACAAAACCCAAGATGGGGCCTCCACAAGGACCCAATGGTCTTCCGTCTCCTGGACCCGGCAGTGCTACTGAAAACCGTAATTACATTGAGGGGCCAAAGGCTGCTCCTAGTGGTTCCTGGGAGAATGTTTGGGGAAATGATACCAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

30.48

Weight (kDa)

9.13

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	777
AccB7I	CCANNNNNTGG	2 cut(s)	473, 533
AccI	GTMKAC	1 cut(s)	362
AciI	CCGC	3 cut(s)	20, 162, 315
AclWI	GGATC	3 cut(s)	400, 509, 518
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	99, 653
AfaI	GTAC	5 cut(s)	151, 319, 407, 446, 570
AfiI	CCNNNNNNNGG	9 cut(s)	57, 473, 506, 533, 755, 756, 767, 791, 797
AjnI	CCWGG	4 cut(s)	130, 550, 790, 857
AluBI	AGCT	4 cut(s)	86, 673, 706, 710
AluI	AGCT	4 cut(s)	86, 673, 706, 710
Alw26I	GTCTC	1 cut(s)	792
AlwI	GGATC	3 cut(s)	400, 509, 518
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	7 cut(s)	3, 59, 191, 206, 463, 758, 833
ApeKI	GCWGC	1 cut(s)	842
AseI	ATTAAT	1 cut(s)	171
AspS9I	GGNCC	9 cut(s)	14, 59, 464, 497, 536, 758, 770, 794, 833
AsuC2I	CCSGG	1 cut(s)	798
AsuHPI	GGTGA	1 cut(s)	589
AsuNHI	GCTAGC	1 cut(s)	706
AvaII	GGWCC	5 cut(s)	14, 497, 536, 770, 794
BbsI	GAAGAC	2 cut(s)	411, 773
BbvI	GCAGC	1 cut(s)	829
BccI	CCATC	3 cut(s)	85, 550, 748
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	4 cut(s)	132, 552, 792, 859
BcnI	CCSGG	1 cut(s)	798
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	5 cut(s)	126, 204, 707, 711, 849
BisI	GCNGC	1 cut(s)	843
BlsI	GCNGC	1 cut(s)	844
BmcAI	AGTACT	2 cut(s)	151, 570
Bme1390I	CCNGG	5 cut(s)	132, 552, 792, 798, 859
Bme18I	GGWCC	5 cut(s)	14, 497, 536, 770, 794
BmgT120I	GGNCC	9 cut(s)	14, 59, 464, 497, 536, 758, 770, 794, 833
BmiI	GGNNCC	6 cut(s)	46, 759, 772, 796, 834, 856
BmrFI	CCNGG	5 cut(s)	132, 552, 792, 798, 859
BmsI	GCATC	1 cut(s)	570
BmtI	GCTAGC	1 cut(s)	710
BpiI	GAAGAC	2 cut(s)	411, 773
BpmI	CTGGAG	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	798
BsaJI	CCNNGG	4 cut(s)	29, 209, 551, 858
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	9 cut(s)	57, 473, 506, 533, 755, 756, 767, 791, 797
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	298
Bse3DI	GCAATG	2 cut(s)	337, 641
BseBI	CCWGG	4 cut(s)	132, 552, 792, 859
BseDI	CCNNGG	4 cut(s)	29, 209, 551, 858
BseGI	GGATG	3 cut(s)	348, 408, 432
BseLI	CCNNNNNNNGG	9 cut(s)	57, 473, 506, 533, 755, 756, 767, 791, 797
BseMI	GCAATG	2 cut(s)	337, 641
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	3 cut(s)	37, 40, 43
BseXI	GCAGC	1 cut(s)	829
BseYI	CCCAGC	1 cut(s)	413
BsgI	GTGCAG	2 cut(s)	48, 236
Bsh1285I	CGRYCG	1 cut(s)	607
BshFI	GGCC	7 cut(s)	5, 61, 193, 208, 465, 760, 835
BsiEI	CGRYCG	1 cut(s)	607
BsiSI	CCGG	3 cut(s)	6, 366, 798
BslI	CCNNNNNNNGG	9 cut(s)	57, 473, 506, 533, 755, 756, 767, 791, 797
BsmAI	GTCTC	1 cut(s)	792
BsmBI	CGTCTC	1 cut(s)	792
BsnI	GGCC	7 cut(s)	5, 61, 193, 208, 465, 760, 835
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	4 cut(s)	392, 514, 523, 679
BspACI	CCGC	3 cut(s)	20, 162, 315
BspANI	GGCC	7 cut(s)	5, 61, 193, 208, 465, 760, 835
BspCNI	CTCAG	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	6 cut(s)	46, 759, 772, 796, 834, 856
BspOI	GCTAGC	1 cut(s)	710
BspPI	GGATC	3 cut(s)	400, 509, 518
BspQI	GCTCTTC	1 cut(s)	669
BsrDI	GCAATG	2 cut(s)	337, 641
BsrFI	RCCGGY	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	298
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	4 cut(s)	29, 209, 551, 858
BssMI	GATC	4 cut(s)	392, 514, 523, 679
BssNAI	GTATAC	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	209
Bst1107I	GTATAC	1 cut(s)	363
Bst2UI	CCWGG	4 cut(s)	132, 552, 792, 859
Bst4CI	ACNGT	1 cut(s)	818
Bst6I	CTCTTC	1 cut(s)	669
BstAUI	TGTACA	1 cut(s)	444
BstC8I	GCNNGC	4 cut(s)	39, 43, 63, 708
BstDEI	CTNAG	1 cut(s)	271
BstDSI	CCRYGG	1 cut(s)	29
BstENI	CCTNNNNNAGG	2 cut(s)	504, 765
BstF5I	GGATG	3 cut(s)	348, 408, 432
BstKTI	GATC	4 cut(s)	395, 517, 526, 682
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	4 cut(s)	392, 514, 523, 679
BstMCI	CGRYCG	1 cut(s)	607
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 214, 462
BstNI	CCWGG	4 cut(s)	132, 552, 792, 859
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	5 cut(s)	130, 550, 790, 796, 857
BstV1I	GCAGC	1 cut(s)	829
BstV2I	GAAGAC	2 cut(s)	411, 773
BstX2I	RGATCY	2 cut(s)	392, 514
BstXI	CCANNNNNNTGG	2 cut(s)	30, 558
BstYI	RGATCY	2 cut(s)	392, 514
BstZ17I	GTATAC	1 cut(s)	363
BsuRI	GGCC	7 cut(s)	5, 61, 193, 208, 465, 760, 835
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	3 cut(s)	348, 408, 432
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	1 cut(s)	808
Cac8I	GCNNGC	4 cut(s)	39, 43, 63, 708
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	654
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	9 cut(s)	14, 59, 464, 497, 536, 758, 770, 794, 833
Csp6I	GTAC	5 cut(s)	150, 318, 406, 445, 569
CviAII	CATG	4 cut(s)	358, 457, 490, 655
CviQI	GTAC	5 cut(s)	150, 318, 406, 445, 569
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	4 cut(s)	394, 516, 525, 681
DpnII	GATC	4 cut(s)	392, 514, 523, 679
DraI	TTTAAA	1 cut(s)	73
DrdI	GACNNNNNNGTC	1 cut(s)	777
DseDI	GACNNNNNNGTC	1 cut(s)	777
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	209
Eco147I	AGGCCT	2 cut(s)	193, 208
Eco47I	GGWCC	5 cut(s)	14, 497, 536, 770, 794
Eco57I	CTGAAG	2 cut(s)	99, 653
EcoNI	CCTNNNNNAGG	2 cut(s)	504, 765
EcoO109I	RGGNCCY	2 cut(s)	758, 770
EcoRII	CCWGG	4 cut(s)	130, 550, 790, 857
EcoT14I	CCWWGG	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	209
Esp3I	CGTCTC	1 cut(s)	792
FaeI	CATG	4 cut(s)	361, 460, 493, 658
FatI	CATG	4 cut(s)	357, 456, 489, 654
FauNDI	CATATG	3 cut(s)	238, 322, 529
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	1 cut(s)	843
FokI	GGATG	3 cut(s)	355, 415, 439
Fsp4HI	GCNGC	1 cut(s)	843
FspBI	CTAG	5 cut(s)	126, 204, 707, 711, 849
GluI	GCNGC	1 cut(s)	843
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	7 cut(s)	5, 61, 193, 208, 465, 760, 835
HapII	CCGG	3 cut(s)	6, 366, 798
Hin1II	CATG	4 cut(s)	361, 460, 493, 658
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	1 cut(s)	735
HpaI	GTTAAC	1 cut(s)	595
HpaII	CCGG	3 cut(s)	6, 366, 798
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	2 cut(s)	363, 595
Hpy188I	TCNGA	3 cut(s)	609, 725, 740
Hpy188III	TCNNGA	5 cut(s)	117, 285, 303, 512, 655
Hpy8I	GTNNAC	2 cut(s)	363, 595
HpyCH4III	ACNGT	1 cut(s)	818
HpyCH4V	TGCA	5 cut(s)	65, 217, 583, 614, 646
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 214, 462
HpyF3I	CTNAG	1 cut(s)	271
Hsp92II	CATG	4 cut(s)	361, 460, 493, 658
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	392, 514, 523, 679
LguI	GCTCTTC	1 cut(s)	669
LmnI	GCTCC	4 cut(s)	34, 50, 703, 850
Lsp1109I	GCAGC	1 cut(s)	829
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	5 cut(s)	126, 204, 707, 711, 849
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	4 cut(s)	394, 516, 525, 681
MboI	GATC	4 cut(s)	392, 514, 523, 679
MboII	GAAGA	5 cut(s)	387, 411, 656, 659, 773
MflI	RGATCY	2 cut(s)	392, 514
MluCI	AATT	3 cut(s)	168, 615, 820
MmeI	TCCRAC	1 cut(s)	587
MseI	TTAA	3 cut(s)	72, 171, 594
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	3 cut(s)	6, 366, 798
MspR9I	CCNGG	5 cut(s)	132, 552, 792, 798, 859
MvaI	CCWGG	4 cut(s)	132, 552, 792, 859
MwoI	GCNNNNNNNGC	3 cut(s)	34, 214, 462
NciI	CCSGG	1 cut(s)	798
NdeI	CATATG	3 cut(s)	238, 322, 529
NdeII	GATC	4 cut(s)	392, 514, 523, 679
NheI	GCTAGC	1 cut(s)	706
NlaIII	CATG	4 cut(s)	361, 460, 493, 658
NlaIV	GGNNCC	6 cut(s)	46, 759, 772, 796, 834, 856
NspI	RCATGY	1 cut(s)	361
PagI	TCATGA	1 cut(s)	654
PceI	AGGCCT	2 cut(s)	193, 208
PciSI	GCTCTTC	1 cut(s)	669
PfeI	GAWTC	1 cut(s)	735
PflMI	CCANNNNNTGG	2 cut(s)	473, 533
PfoI	TCCNGGA	1 cut(s)	790
PkrI	GCNGC	1 cut(s)	844
PpuMI	RGGWCCY	1 cut(s)	770
PshBI	ATTAAT	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	770
Psp6I	CCWGG	4 cut(s)	130, 550, 790, 857
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	4 cut(s)	130, 550, 790, 857
PspN4I	GGNNCC	6 cut(s)	46, 759, 772, 796, 834, 856
PspPI	GGNCC	9 cut(s)	14, 59, 464, 497, 536, 758, 770, 794, 833
PspPPI	RGGWCCY	1 cut(s)	770
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	2 cut(s)	392, 514
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	5 cut(s)	151, 319, 407, 446, 570
RsaNI	GTAC	5 cut(s)	150, 318, 406, 445, 569
SapI	GCTCTTC	1 cut(s)	669
SaqAI	TTAA	3 cut(s)	72, 171, 594
SatI	GCNGC	1 cut(s)	843
Sau3AI	GATC	4 cut(s)	392, 514, 523, 679
Sau96I	GGNCC	9 cut(s)	14, 59, 464, 497, 536, 758, 770, 794, 833
ScaI	AGTACT	2 cut(s)	151, 570
ScrFI	CCNGG	5 cut(s)	132, 552, 792, 798, 859
SfaNI	GCATC	1 cut(s)	570
SinI	GGWCC	5 cut(s)	14, 497, 536, 770, 794
Sse9I	AATT	3 cut(s)	168, 615, 820
SseBI	AGGCCT	2 cut(s)	193, 208
SsiI	CCGC	3 cut(s)	20, 162, 315
SspI	AATATT	1 cut(s)	729
SspMI	CTAG	5 cut(s)	126, 204, 707, 711, 849
StuI	AGGCCT	2 cut(s)	193, 208
StyD4I	CCNGG	5 cut(s)	130, 550, 790, 796, 857
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	818
TaqI	TCGA	1 cut(s)	175
TaqII	GACCGA	1 cut(s)	593
TasI	AATT	3 cut(s)	168, 615, 820
TatI	WGTACW	3 cut(s)	149, 444, 568
TfiI	GAWTC	1 cut(s)	735
Tru1I	TTAA	3 cut(s)	72, 171, 594
Tru9I	TTAA	3 cut(s)	72, 171, 594
TscAI	CASTG	1 cut(s)	808
TseI	GCWGC	1 cut(s)	842
TspDTI	ATGAA	1 cut(s)	643
TspGWI	ACGGA	1 cut(s)	774
TspRI	CASTG	1 cut(s)	808
Van91I	CCANNNNNTGG	2 cut(s)	473, 533
VpaK11BI	GGWCC	5 cut(s)	14, 497, 536, 770, 794
VspI	ATTAAT	1 cut(s)	171
XagI	CCTNNNNNAGG	2 cut(s)	504, 765
XceI	RCATGY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	555
XmiI	GTMKAC	1 cut(s)	362
XspI	CTAG	5 cut(s)	126, 204, 707, 711, 849
ZrmI	AGTACT	2 cut(s)	151, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.