Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Reverse (-)

34175693 .. 34178376

Gene Structure 2684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGATGCCTTTTGCAGGTAATGGTCCTCCGCCAAAGCCATGGGAGCAAGCAGGCTCCTCCTCTGGGCCTGCACCTTTTAAACCATCATCAGCTGGAAGCACAAGTGATGTAGTGGAGGCTTCAGGAACTGCTAGACCTGGAGAAATAGTATCAAGTACTGATAAAACCGCCATAATTAATCGAAATACTCTTGGTAGGCCTGTTCCCTCTAGGCCTTGGGTGCAGAACTATGGAAGTAACACATATGGAGGCTATGGTTCTACTAGGAACTATAACTCAGGTTATGGCTCTGGAATGACTGGCATATCTGGAATGTATGGTGGTACATATGGTGGCAATGGAGGATTATATGGTGGAGGGATGTTTGGCAACAGCATGTATACCGGAGGATATGGTGGGCTTTATGGTGGATCTTCTGGGATGTACGGGGCTGGGTCTTCTGGGATGTATGGTGGTGGAATGTACAATAGTGGCATGGGAGGCCCAATGGGTGGCTATGGAATGGGCATGGGTGGTCCTTATGGAGGTCAAGATCCAAATGATCCATATGGTGGTCCTCCCTCTCCACCAGGGTTTTGGGTTTCAGTACTTCGGGTGATGCAAGGTGTGGTTAACTTTTTCGGTCGGTTTGCAATTCTAATAGACCAGAATACACAGGCATTGCATTTGTTCATGACTGCTCTTCTTCAGCTTTTTGATCGCTCTGGTATTTTGTATGGGGAGCTAGCTAGGTTTGTATTGAGAATATTGGGAATCAGAACAAAACCCAAGATGGGGCCTCCACAAGGACCTAATGGTCTTCCGGCTCCTGGACCCGGCAGTGCCCCTGAAAACCGTAATTACATTGAGGGACTAAAGGCTGCTCCTAGTGGTTCCTGGGAGAATGTTTGGGGAAATGATACCACTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

31.18

Weight (kDa)

9.26

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	795
Acc36I	ACCTGC	1 cut(s)	5
AccB7I	CCANNNNNTGG	2 cut(s)	491, 551
AccI	GTMKAC	1 cut(s)	380
AciI	CCGC	2 cut(s)	29, 168
AclWI	GGATC	3 cut(s)	418, 527, 536
AcuI	CTGAAG	2 cut(s)	105, 671
AfaI	GTAC	5 cut(s)	157, 325, 425, 464, 588
AjnI	CCWGG	4 cut(s)	136, 568, 808, 875
AluBI	AGCT	4 cut(s)	92, 691, 724, 728
AluI	AGCT	4 cut(s)	92, 691, 724, 728
AlwI	GGATC	3 cut(s)	418, 527, 536
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	5 cut(s)	65, 197, 212, 481, 776
ApeKI	GCWGC	1 cut(s)	860
AseI	ATTAAT	1 cut(s)	177
AspS9I	GGNCC	8 cut(s)	23, 65, 482, 515, 554, 776, 788, 812
AsuC2I	CCSGG	1 cut(s)	816
AsuHPI	GGTGA	1 cut(s)	607
AsuNHI	GCTAGC	1 cut(s)	724
AvaII	GGWCC	5 cut(s)	23, 515, 554, 788, 812
BaeGI	GKGCMC	1 cut(s)	826
BbsI	GAAGAC	2 cut(s)	429, 791
BbvI	GCAGC	1 cut(s)	847
BccI	CCATC	2 cut(s)	91, 766
BciT130I	CCWGG	4 cut(s)	138, 570, 810, 877
BcnI	CCSGG	1 cut(s)	816
BfaI	CTAG	6 cut(s)	132, 210, 264, 725, 729, 867
BfuAI	ACCTGC	1 cut(s)	5
BisI	GCNGC	1 cut(s)	861
BlsI	GCNGC	1 cut(s)	862
BmcAI	AGTACT	2 cut(s)	157, 588
Bme1390I	CCNGG	5 cut(s)	138, 570, 810, 816, 877
Bme18I	GGWCC	5 cut(s)	23, 515, 554, 788, 812
BmgT120I	GGNCC	8 cut(s)	23, 65, 482, 515, 554, 776, 788, 812
BmiI	GGNNCC	5 cut(s)	55, 777, 807, 814, 874
BmrFI	CCNGG	5 cut(s)	138, 570, 810, 816, 877
BmsI	GCATC	1 cut(s)	588
BmtI	GCTAGC	1 cut(s)	728
BpiI	GAAGAC	2 cut(s)	429, 791
BpmI	CTGGAG	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	816
BsaJI	CCNNGG	4 cut(s)	38, 215, 569, 876
BsaWI	WCCGGW	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bse1I	ACTGG	1 cut(s)	304
Bse3DI	GCAATG	2 cut(s)	343, 659
BseBI	CCWGG	4 cut(s)	138, 570, 810, 877
BseDI	CCNNGG	4 cut(s)	38, 215, 569, 876
BseGI	GGATG	3 cut(s)	366, 426, 450
BseMI	GCAATG	2 cut(s)	343, 659
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	2 cut(s)	46, 49
BseSI	GKGCMC	1 cut(s)	826
BseXI	GCAGC	1 cut(s)	847
BseYI	CCCAGC	1 cut(s)	431
BsgI	GTGCAG	2 cut(s)	54, 242
Bsh1285I	CGRYCG	1 cut(s)	625
BshFI	GGCC	5 cut(s)	67, 199, 214, 483, 778
BsiEI	CGRYCG	1 cut(s)	625
BsiSI	CCGG	3 cut(s)	384, 803, 816
BslFI	GGGAC	1 cut(s)	864
BsmFI	GGGAC	1 cut(s)	864
BsnI	GGCC	5 cut(s)	67, 199, 214, 483, 778
Bsp1286I	GDGCHC	1 cut(s)	826
Bsp1407I	TGTACA	1 cut(s)	462
Bsp143I	GATC	4 cut(s)	410, 532, 541, 697
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	2 cut(s)	29, 168
BspANI	GGCC	5 cut(s)	67, 199, 214, 483, 778
BspCNI	CTCAG	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	5 cut(s)	55, 777, 807, 814, 874
BspMI	ACCTGC	1 cut(s)	5
BspOI	GCTAGC	1 cut(s)	728
BspPI	GGATC	3 cut(s)	418, 527, 536
BspQI	GCTCTTC	1 cut(s)	687
BsrDI	GCAATG	2 cut(s)	343, 659
BsrGI	TGTACA	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	4 cut(s)	38, 215, 569, 876
BssMI	GATC	4 cut(s)	410, 532, 541, 697
BssNAI	GTATAC	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	38, 215
Bst1107I	GTATAC	1 cut(s)	381
Bst2UI	CCWGG	4 cut(s)	138, 570, 810, 877
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	1 cut(s)	687
BstAUI	TGTACA	1 cut(s)	462
BstC8I	GCNNGC	4 cut(s)	48, 52, 69, 726
BstDEI	CTNAG	1 cut(s)	277
BstDSI	CCRYGG	1 cut(s)	38
BstENI	CCTNNNNNAGG	3 cut(s)	12, 522, 783
BstF5I	GGATG	3 cut(s)	366, 426, 450
BstKTI	GATC	4 cut(s)	413, 535, 544, 700
BstMBI	GATC	4 cut(s)	410, 532, 541, 697
BstMCI	CGRYCG	1 cut(s)	625
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 220, 480
BstNI	CCWGG	4 cut(s)	138, 570, 810, 877
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	5 cut(s)	136, 568, 808, 814, 875
BstSLI	GKGCMC	1 cut(s)	826
BstV1I	GCAGC	1 cut(s)	847
BstV2I	GAAGAC	2 cut(s)	429, 791
BstX2I	RGATCY	2 cut(s)	410, 532
BstXI	CCANNNNNNTGG	2 cut(s)	39, 576
BstYI	RGATCY	2 cut(s)	410, 532
BstZ17I	GTATAC	1 cut(s)	381
BsuRI	GGCC	5 cut(s)	67, 199, 214, 483, 778
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	366, 426, 450
BtsI	GCAGTG	1 cut(s)	826
BtsIMutI	CAGTG	1 cut(s)	826
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	4 cut(s)	48, 52, 69, 726
CaiI	CAGNNNCTG	1 cut(s)	128
CciI	TCATGA	1 cut(s)	672
Cfr13I	GGNCC	8 cut(s)	23, 65, 482, 515, 554, 776, 788, 812
Csp6I	GTAC	5 cut(s)	156, 324, 424, 463, 587
CviAII	CATG	5 cut(s)	39, 376, 475, 508, 673
CviQI	GTAC	5 cut(s)	156, 324, 424, 463, 587
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	4 cut(s)	412, 534, 543, 699
DpnII	GATC	4 cut(s)	410, 532, 541, 697
DraI	TTTAAA	1 cut(s)	79
DrdI	GACNNNNNNGTC	1 cut(s)	795
DseDI	GACNNNNNNGTC	1 cut(s)	795
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
EciI	GGCGGA	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	38, 215
Eco147I	AGGCCT	2 cut(s)	199, 214
Eco47I	GGWCC	5 cut(s)	23, 515, 554, 788, 812
Eco57I	CTGAAG	2 cut(s)	105, 671
EcoNI	CCTNNNNNAGG	3 cut(s)	12, 522, 783
EcoO109I	RGGNCCY	2 cut(s)	776, 788
EcoRII	CCWGG	4 cut(s)	136, 568, 808, 875
EcoT14I	CCWWGG	2 cut(s)	38, 215
ErhI	CCWWGG	2 cut(s)	38, 215
FaeI	CATG	5 cut(s)	42, 379, 478, 511, 676
FaqI	GGGAC	1 cut(s)	864
FatI	CATG	5 cut(s)	38, 375, 474, 507, 672
FauNDI	CATATG	3 cut(s)	244, 328, 547
FblI	GTMKAC	1 cut(s)	380
Fnu4HI	GCNGC	1 cut(s)	861
FokI	GGATG	3 cut(s)	373, 433, 457
Fsp4HI	GCNGC	1 cut(s)	861
FspBI	CTAG	6 cut(s)	132, 210, 264, 725, 729, 867
GluI	GCNGC	1 cut(s)	861
GsaI	CCCAGC	1 cut(s)	435
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	5 cut(s)	67, 199, 214, 483, 778
HapII	CCGG	3 cut(s)	384, 803, 816
Hin1II	CATG	5 cut(s)	42, 379, 478, 511, 676
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	1 cut(s)	753
HpaI	GTTAAC	1 cut(s)	613
HpaII	CCGG	3 cut(s)	384, 803, 816
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	2 cut(s)	381, 613
Hpy188I	TCNGA	1 cut(s)	758
Hpy188III	TCNNGA	5 cut(s)	123, 291, 309, 530, 673
Hpy8I	GTNNAC	2 cut(s)	381, 613
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4V	TGCA	6 cut(s)	14, 71, 223, 601, 632, 664
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 220, 480
HpyF3I	CTNAG	1 cut(s)	277
Hsp92II	CATG	5 cut(s)	42, 379, 478, 511, 676
KspAI	GTTAAC	1 cut(s)	613
Kzo9I	GATC	4 cut(s)	410, 532, 541, 697
LguI	GCTCTTC	1 cut(s)	687
LmnI	GCTCC	5 cut(s)	43, 59, 721, 811, 868
Lsp1109I	GCAGC	1 cut(s)	847
LweI	GCATC	1 cut(s)	588
MaeI	CTAG	6 cut(s)	132, 210, 264, 725, 729, 867
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	4 cut(s)	412, 534, 543, 699
MboI	GATC	4 cut(s)	410, 532, 541, 697
MboII	GAAGA	5 cut(s)	405, 429, 674, 677, 791
MflI	RGATCY	2 cut(s)	410, 532
MhlI	GDGCHC	1 cut(s)	826
MluCI	AATT	3 cut(s)	174, 633, 838
MseI	TTAA	3 cut(s)	78, 177, 612
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	3 cut(s)	384, 803, 816
MspR9I	CCNGG	5 cut(s)	138, 570, 810, 816, 877
MvaI	CCWGG	4 cut(s)	138, 570, 810, 877
MwoI	GCNNNNNNNGC	3 cut(s)	43, 220, 480
NciI	CCSGG	1 cut(s)	816
NcoI	CCATGG	1 cut(s)	38
NdeI	CATATG	3 cut(s)	244, 328, 547
NdeII	GATC	4 cut(s)	410, 532, 541, 697
NheI	GCTAGC	1 cut(s)	724
NlaIII	CATG	5 cut(s)	42, 379, 478, 511, 676
NlaIV	GGNNCC	5 cut(s)	55, 777, 807, 814, 874
NspI	RCATGY	1 cut(s)	379
PagI	TCATGA	1 cut(s)	672
PceI	AGGCCT	2 cut(s)	199, 214
PciSI	GCTCTTC	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	753
PflMI	CCANNNNNTGG	2 cut(s)	491, 551
PfoI	TCCNGGA	1 cut(s)	808
PkrI	GCNGC	1 cut(s)	862
PpuMI	RGGWCCY	1 cut(s)	788
PshBI	ATTAAT	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	788
Psp6I	CCWGG	4 cut(s)	136, 568, 808, 875
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	4 cut(s)	136, 568, 808, 875
PspN4I	GGNNCC	5 cut(s)	55, 777, 807, 814, 874
PspPI	GGNCC	8 cut(s)	23, 65, 482, 515, 554, 776, 788, 812
PspPPI	RGGWCCY	1 cut(s)	788
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	410, 532
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	5 cut(s)	157, 325, 425, 464, 588
RsaNI	GTAC	5 cut(s)	156, 324, 424, 463, 587
SapI	GCTCTTC	1 cut(s)	687
SaqAI	TTAA	3 cut(s)	78, 177, 612
SatI	GCNGC	1 cut(s)	861
Sau3AI	GATC	4 cut(s)	410, 532, 541, 697
Sau96I	GGNCC	8 cut(s)	23, 65, 482, 515, 554, 776, 788, 812
ScaI	AGTACT	2 cut(s)	157, 588
ScrFI	CCNGG	5 cut(s)	138, 570, 810, 816, 877
SduI	GDGCHC	1 cut(s)	826
SfaNI	GCATC	1 cut(s)	588
SinI	GGWCC	5 cut(s)	23, 515, 554, 788, 812
Sse9I	AATT	3 cut(s)	174, 633, 838
SseBI	AGGCCT	2 cut(s)	199, 214
SsiI	CCGC	2 cut(s)	29, 168
SspI	AATATT	1 cut(s)	747
SspMI	CTAG	6 cut(s)	132, 210, 264, 725, 729, 867
StuI	AGGCCT	2 cut(s)	199, 214
StyD4I	CCNGG	5 cut(s)	136, 568, 808, 814, 875
StyI	CCWWGG	2 cut(s)	38, 215
TaaI	ACNGT	1 cut(s)	836
TaqI	TCGA	1 cut(s)	181
TaqII	GACCGA	1 cut(s)	611
TasI	AATT	3 cut(s)	174, 633, 838
TatI	WGTACW	3 cut(s)	155, 462, 586
TfiI	GAWTC	1 cut(s)	753
Tru1I	TTAA	3 cut(s)	78, 177, 612
Tru9I	TTAA	3 cut(s)	78, 177, 612
TscAI	CASTG	1 cut(s)	826
TseI	GCWGC	1 cut(s)	860
TspDTI	ATGAA	1 cut(s)	661
TspRI	CASTG	1 cut(s)	826
Van91I	CCANNNNNTGG	2 cut(s)	491, 551
VpaK11BI	GGWCC	5 cut(s)	23, 515, 554, 788, 812
VspI	ATTAAT	1 cut(s)	177
XagI	CCTNNNNNAGG	3 cut(s)	12, 522, 783
XceI	RCATGY	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	573
XmiI	GTMKAC	1 cut(s)	380
XspI	CTAG	6 cut(s)	132, 210, 264, 725, 729, 867
ZrmI	AGTACT	2 cut(s)	157, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.