Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001211.1

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Forward (+)

336347 .. 340412

Gene Structure 4066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001211.1_g000082.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atggccggtaatggtcctccgccaaagccgtgggagcaagcaggctcctcctctgggcctgcaccttttaaaccatcatcagctggaagcacaagtgatgtagtggaggcttcaggaactgctagacctggagaaatagtatcaagtactgataaaaccgccataattaatcaaaatactcttggtaggcctgttccctctaggccttgggtgcagaactatggaagtaacacatatggaggttatggctctggaatgactggcatatctggaatgtatggcggtacatatggtggcaatggaggattatatggtggagggatgtatggcaacagcatgtataccggaggatatggtgggctttatggtggatcttctgggatgtacggggctgggtcttctgggatgtatggtggtggaatgtacaatagtggcatgggaggcccaatgggtggctatggaatgggcatgggtggtccttatggaggtcaagatccaaatgatccatatggtggtcctccatctccaccagggttttgggtttcagtacttcgggtgatgcaaggtgtggttaactttttcggtcggattgcaattctaatagaccagaatacacaggcattgcatttgttcatgactgctcttcttcagctttttgatcgctctggtattttgtacggggagctagctaggtttgtattgagaatattgggaatcagaacaaaacccaagatggggcctccacaaggacccaatggtcttccgtctcctggacccggcagtgcttctgaaaaccctaattacattgaggggccaaaggctgctcctagtgttaaacagaagaaagaagaagacatctgccgactcctcattcttaatgaaaacctgtgcaaatatgattgtagcatcgaagtcctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

31.55

Weight (kDa)

8.29

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	756
AccB7I	CCANNNNNTGG	2 cut(s)	452, 512
AccI	GTMKAC	1 cut(s)	341
AciI	CCGC	3 cut(s)	20, 159, 282
AclWI	GGATC	3 cut(s)	379, 488, 497
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	96, 632
AfaI	GTAC	6 cut(s)	148, 286, 386, 425, 549, 677
AfiI	CCNNNNNNNGG	9 cut(s)	54, 452, 485, 512, 734, 735, 746, 770, 776
AjnI	CCWGG	3 cut(s)	127, 529, 769
AluBI	AGCT	4 cut(s)	83, 652, 685, 689
AluI	AGCT	4 cut(s)	83, 652, 685, 689
Alw26I	GTCTC	1 cut(s)	771
AlwI	GGATC	3 cut(s)	379, 488, 497
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	7 cut(s)	3, 56, 188, 203, 442, 737, 812
ApeKI	GCWGC	1 cut(s)	821
AseI	ATTAAT	1 cut(s)	168
AspS9I	GGNCC	9 cut(s)	14, 56, 443, 476, 515, 737, 749, 773, 812
AsuC2I	CCSGG	1 cut(s)	777
AsuHPI	GGTGA	1 cut(s)	568
AsuNHI	GCTAGC	1 cut(s)	685
AvaII	GGWCC	5 cut(s)	14, 476, 515, 749, 773
BbsI	GAAGAC	3 cut(s)	390, 752, 858
BbvI	GCAGC	1 cut(s)	808
BccI	CCATC	3 cut(s)	82, 529, 727
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	3 cut(s)	129, 531, 771
BcnI	CCSGG	1 cut(s)	777
BcoDI	GTCTC	1 cut(s)	771
BfaI	CTAG	5 cut(s)	123, 201, 686, 690, 828
BfmI	CTRYAG	1 cut(s)	917
BisI	GCNGC	1 cut(s)	822
BlsI	GCNGC	1 cut(s)	823
BmcAI	AGTACT	2 cut(s)	148, 549
Bme1390I	CCNGG	4 cut(s)	129, 531, 771, 777
Bme18I	GGWCC	5 cut(s)	14, 476, 515, 749, 773
BmgT120I	GGNCC	9 cut(s)	14, 56, 443, 476, 515, 737, 749, 773, 812
BmiI	GGNNCC	5 cut(s)	46, 738, 751, 775, 813
BmrFI	CCNGG	4 cut(s)	129, 531, 771, 777
BmsI	GCATC	2 cut(s)	549, 915
BmtI	GCTAGC	1 cut(s)	689
BpiI	GAAGAC	3 cut(s)	390, 752, 858
BpmI	CTGGAG	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	777
BsaJI	CCNNGG	3 cut(s)	29, 206, 530
BsaWI	WCCGGW	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	9 cut(s)	54, 452, 485, 512, 734, 735, 746, 770, 776
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	2 cut(s)	304, 620
BseBI	CCWGG	3 cut(s)	129, 531, 771
BseDI	CCNNGG	3 cut(s)	29, 206, 530
BseGI	GGATG	3 cut(s)	327, 387, 411
BseLI	CCNNNNNNNGG	9 cut(s)	54, 452, 485, 512, 734, 735, 746, 770, 776
BseMI	GCAATG	2 cut(s)	304, 620
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	3 cut(s)	37, 40, 857
BseXI	GCAGC	1 cut(s)	808
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	2 cut(s)	45, 233
Bsh1285I	CGRYCG	1 cut(s)	586
BshFI	GGCC	7 cut(s)	5, 58, 190, 205, 444, 739, 814
BsiEI	CGRYCG	1 cut(s)	586
BsiSI	CCGG	3 cut(s)	6, 345, 777
BslI	CCNNNNNNNGG	9 cut(s)	54, 452, 485, 512, 734, 735, 746, 770, 776
BsmAI	GTCTC	1 cut(s)	771
BsmBI	CGTCTC	1 cut(s)	771
BsnI	GGCC	7 cut(s)	5, 58, 190, 205, 444, 739, 814
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	4 cut(s)	371, 493, 502, 658
BspACI	CCGC	3 cut(s)	20, 159, 282
BspANI	GGCC	7 cut(s)	5, 58, 190, 205, 444, 739, 814
BspHI	TCATGA	1 cut(s)	633
BspLI	GGNNCC	5 cut(s)	46, 738, 751, 775, 813
BspOI	GCTAGC	1 cut(s)	689
BspPI	GGATC	3 cut(s)	379, 488, 497
BspQI	GCTCTTC	1 cut(s)	648
BsrDI	GCAATG	2 cut(s)	304, 620
BsrFI	RCCGGY	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	29, 206, 530
BssMI	GATC	4 cut(s)	371, 493, 502, 658
BssNAI	GTATAC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	206
Bst1107I	GTATAC	1 cut(s)	342
Bst2UI	CCWGG	3 cut(s)	129, 531, 771
Bst6I	CTCTTC	1 cut(s)	648
BstAUI	TGTACA	1 cut(s)	423
BstC8I	GCNNGC	4 cut(s)	39, 43, 60, 687
BstDSI	CCRYGG	1 cut(s)	29
BstENI	CCTNNNNNAGG	2 cut(s)	483, 744
BstF5I	GGATG	3 cut(s)	327, 387, 411
BstKTI	GATC	4 cut(s)	374, 496, 505, 661
BstMAI	GTCTC	1 cut(s)	771
BstMBI	GATC	4 cut(s)	371, 493, 502, 658
BstMCI	CGRYCG	1 cut(s)	586
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 211, 441
BstNI	CCWGG	3 cut(s)	129, 531, 771
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	4 cut(s)	127, 529, 769, 775
BstSFI	CTRYAG	1 cut(s)	917
BstV1I	GCAGC	1 cut(s)	808
BstV2I	GAAGAC	3 cut(s)	390, 752, 858
BstX2I	RGATCY	2 cut(s)	371, 493
BstXI	CCANNNNNNTGG	2 cut(s)	30, 537
BstYI	RGATCY	2 cut(s)	371, 493
BstZ17I	GTATAC	1 cut(s)	342
BsuRI	GGCC	7 cut(s)	5, 58, 190, 205, 444, 739, 814
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	3 cut(s)	327, 387, 411
BtsI	GCAGTG	1 cut(s)	787
BtsIMutI	CAGTG	1 cut(s)	787
Cac8I	GCNNGC	4 cut(s)	39, 43, 60, 687
CaiI	CAGNNNCTG	1 cut(s)	119
CciI	TCATGA	1 cut(s)	633
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	9 cut(s)	14, 56, 443, 476, 515, 737, 749, 773, 812
Csp6I	GTAC	6 cut(s)	147, 285, 385, 424, 548, 676
CviAII	CATG	4 cut(s)	337, 436, 469, 634
CviQI	GTAC	6 cut(s)	147, 285, 385, 424, 548, 676
DpnI	GATC	4 cut(s)	373, 495, 504, 660
DpnII	GATC	4 cut(s)	371, 493, 502, 658
DraI	TTTAAA	1 cut(s)	70
DrdI	GACNNNNNNGTC	1 cut(s)	756
DseDI	GACNNNNNNGTC	1 cut(s)	756
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	206
Eco147I	AGGCCT	2 cut(s)	190, 205
Eco47I	GGWCC	5 cut(s)	14, 476, 515, 749, 773
Eco57I	CTGAAG	2 cut(s)	96, 632
EcoNI	CCTNNNNNAGG	2 cut(s)	483, 744
EcoO109I	RGGNCCY	2 cut(s)	737, 749
EcoRII	CCWGG	3 cut(s)	127, 529, 769
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	771
FaeI	CATG	4 cut(s)	340, 439, 472, 637
FatI	CATG	4 cut(s)	336, 435, 468, 633
FauNDI	CATATG	3 cut(s)	235, 289, 508
FblI	GTMKAC	1 cut(s)	341
Fnu4HI	GCNGC	1 cut(s)	822
FokI	GGATG	3 cut(s)	334, 394, 418
Fsp4HI	GCNGC	1 cut(s)	822
FspBI	CTAG	5 cut(s)	123, 201, 686, 690, 828
GluI	GCNGC	1 cut(s)	822
GsaI	CCCAGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	7 cut(s)	5, 58, 190, 205, 444, 739, 814
HapII	CCGG	3 cut(s)	6, 345, 777
Hin1II	CATG	4 cut(s)	340, 439, 472, 637
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	2 cut(s)	714, 864
HpaI	GTTAAC	1 cut(s)	574
HpaII	CCGG	3 cut(s)	6, 345, 777
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	2 cut(s)	342, 574
Hpy188I	TCNGA	3 cut(s)	588, 719, 790
Hpy188III	TCNNGA	5 cut(s)	114, 252, 270, 491, 634
Hpy8I	GTNNAC	2 cut(s)	342, 574
HpyCH4V	TGCA	6 cut(s)	62, 214, 562, 593, 625, 891
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 211, 441
Hsp92II	CATG	4 cut(s)	340, 439, 472, 637
KspAI	GTTAAC	1 cut(s)	574
Kzo9I	GATC	4 cut(s)	371, 493, 502, 658
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	4 cut(s)	34, 50, 682, 829
Lsp1109I	GCAGC	1 cut(s)	808
LweI	GCATC	2 cut(s)	549, 915
MaeI	CTAG	5 cut(s)	123, 201, 686, 690, 828
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	4 cut(s)	373, 495, 504, 660
MboI	GATC	4 cut(s)	371, 493, 502, 658
MboII	GAAGA	8 cut(s)	366, 390, 635, 638, 752, 853, 860, 863
MflI	RGATCY	2 cut(s)	371, 493
MluCI	AATT	3 cut(s)	165, 594, 799
MlyI	GAGTC	1 cut(s)	858
MmeI	TCCRAC	1 cut(s)	566
MseI	TTAA	5 cut(s)	69, 168, 573, 834, 876
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	3 cut(s)	6, 345, 777
MspR9I	CCNGG	4 cut(s)	129, 531, 771, 777
MvaI	CCWGG	3 cut(s)	129, 531, 771
MwoI	GCNNNNNNNGC	3 cut(s)	34, 211, 441
NciI	CCSGG	1 cut(s)	777
NdeI	CATATG	3 cut(s)	235, 289, 508
NdeII	GATC	4 cut(s)	371, 493, 502, 658
NheI	GCTAGC	1 cut(s)	685
NlaIII	CATG	4 cut(s)	340, 439, 472, 637
NlaIV	GGNNCC	5 cut(s)	46, 738, 751, 775, 813
NspI	RCATGY	1 cut(s)	340
PagI	TCATGA	1 cut(s)	633
PceI	AGGCCT	2 cut(s)	190, 205
PciSI	GCTCTTC	1 cut(s)	648
PfeI	GAWTC	1 cut(s)	714
PflMI	CCANNNNNTGG	2 cut(s)	452, 512
PfoI	TCCNGGA	1 cut(s)	769
PkrI	GCNGC	1 cut(s)	823
PleI	GAGTC	1 cut(s)	858
PpsI	GAGTC	1 cut(s)	858
PpuMI	RGGWCCY	1 cut(s)	749
PshBI	ATTAAT	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	749
Psp6I	CCWGG	3 cut(s)	127, 529, 769
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	3 cut(s)	127, 529, 769
PspN4I	GGNNCC	5 cut(s)	46, 738, 751, 775, 813
PspPI	GGNCC	9 cut(s)	14, 56, 443, 476, 515, 737, 749, 773, 812
PspPPI	RGGWCCY	1 cut(s)	749
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	2 cut(s)	371, 493
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	6 cut(s)	148, 286, 386, 425, 549, 677
RsaNI	GTAC	6 cut(s)	147, 285, 385, 424, 548, 676
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	5 cut(s)	69, 168, 573, 834, 876
SatI	GCNGC	1 cut(s)	822
Sau3AI	GATC	4 cut(s)	371, 493, 502, 658
Sau96I	GGNCC	9 cut(s)	14, 56, 443, 476, 515, 737, 749, 773, 812
ScaI	AGTACT	2 cut(s)	148, 549
SchI	GAGTC	1 cut(s)	858
ScrFI	CCNGG	4 cut(s)	129, 531, 771, 777
SfaNI	GCATC	2 cut(s)	549, 915
SfcI	CTRYAG	1 cut(s)	917
SinI	GGWCC	5 cut(s)	14, 476, 515, 749, 773
Sse9I	AATT	3 cut(s)	165, 594, 799
SseBI	AGGCCT	2 cut(s)	190, 205
SsiI	CCGC	3 cut(s)	20, 159, 282
SspI	AATATT	1 cut(s)	708
SspMI	CTAG	5 cut(s)	123, 201, 686, 690, 828
StuI	AGGCCT	2 cut(s)	190, 205
StyD4I	CCNGG	4 cut(s)	127, 529, 769, 775
StyI	CCWWGG	1 cut(s)	206
TaqI	TCGA	1 cut(s)	909
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	3 cut(s)	165, 594, 799
TatI	WGTACW	3 cut(s)	146, 423, 547
TfiI	GAWTC	1 cut(s)	714
Tru1I	TTAA	5 cut(s)	69, 168, 573, 834, 876
Tru9I	TTAA	5 cut(s)	69, 168, 573, 834, 876
TscAI	CASTG	1 cut(s)	787
TseI	GCWGC	1 cut(s)	821
TspDTI	ATGAA	2 cut(s)	622, 894
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	1 cut(s)	787
Van91I	CCANNNNNTGG	2 cut(s)	452, 512
VpaK11BI	GGWCC	5 cut(s)	14, 476, 515, 749, 773
VspI	ATTAAT	1 cut(s)	168
XagI	CCTNNNNNAGG	2 cut(s)	483, 744
XceI	RCATGY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	341
XspI	CTAG	5 cut(s)	123, 201, 686, 690, 828
ZrmI	AGTACT	2 cut(s)	148, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.