Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Forward (+)

5437176 .. 5440320

Gene Structure 3145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1046700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGACTCGAATCCCCAGCCCTCAGCTAATGGTCCTCCCCCAAAACCGTGGGAGAGAGCAGGTTCCTCATCTGGTCCTGCACCTTTTAAACCCCCATCAGCTGGAAGCACAAGTGATGTAGTTGAGGCGTCGGGAACTGCTAAACCTGGAGAAATTGTTCCAAGTTCTGATAGAAATACCGCTGCTAATAGAAATGCTCTGGCTAGGCCGGTTCCCTCAAGGCCTTGGGAGCAGAACTATGGAAGCAGCACCAACTATGGAGGATATGGTTCCACTATGAACTATAACTCAGGTTACGGTTCTGGAATATCTGGAACGTCTGGAATGTATGGTTCATATGGTGGAAGTGGAGGATTATACGGTGGGGGGATGTATGGCAACAACAGCATGTATAGGGGAGGGTATGGTGGTGGTGGTGGGCTTTATGGTTCTTCTGGAATGTATGGAGGTGGGATGTACAATAGTAGTTTAGGAGCCCCAATGGGTGGTTATGGAATGGGCATGGGTGGTCCTTATGGAGGTCAAGATCCAAATGATCCATATGGTCCTCCTCCATCTCATCCTGGGTTTTGGATTTCAGTACTTCGGGTGACGCAAGGTGTGGTTAACTTTTTTGGTCGAATTGCAATTCTCATAGACCAGAACACCCAGGCATTCCATTTGTTCATGTCTGCACTTCTTCAGCTTTTTGATCGTTCTGGATTATTGTACGGAGAGCTAGCTAGATTTGTATTGAGGATACTGGGTGTTAAAACAAAATCCAAGGTTCATCCTCCAGGTCCGAACGGGTTTAATGGACCGCATGGACCCAACGGACCCCATGGACCCTACGGAGGAAACCAGAACTTCATTGAGGGTCCGAGACCTGCTCCTAGTGGTGGTTGGGACAATGTTTGGGAAAATGATGCTGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

31.45

Weight (kDa)

8.92

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	50, 874
AccB7I	CCANNNNNTGG	2 cut(s)	101, 485
AciI	CCGC	2 cut(s)	180, 800
AclWI	GGATC	2 cut(s)	521, 530
AcuI	CTGAAG	1 cut(s)	665
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	3 cut(s)	458, 582, 710
AfiI	CCNNNNNNNGG	5 cut(s)	101, 485, 518, 833, 878
AjnI	CCWGG	4 cut(s)	145, 562, 648, 775
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	5 cut(s)	26, 101, 685, 718, 722
AluI	AGCT	5 cut(s)	26, 101, 685, 718, 722
Alw26I	GTCTC	1 cut(s)	856
AlwI	GGATC	2 cut(s)	521, 530
AoxI	GGCC	2 cut(s)	206, 221
ApeKI	GCWGC	2 cut(s)	182, 246
Asp700I	GAANNNNTTC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	601
AsuNHI	GCTAGC	1 cut(s)	718
BanII	GRGCYC	1 cut(s)	478
BbvCI	CCTCAGC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	169, 258
BccI	CCATC	2 cut(s)	103, 562
BciT130I	CCWGG	4 cut(s)	147, 564, 650, 777
BciVI	GTATCC	1 cut(s)	732
BcoDI	GTCTC	1 cut(s)	856
BfaI	CTAG	4 cut(s)	204, 719, 723, 873
BfuAI	ACCTGC	2 cut(s)	50, 874
BfuI	GTATCC	1 cut(s)	732
BisI	GCNGC	2 cut(s)	183, 247
BlsI	GCNGC	2 cut(s)	184, 248
BmcAI	AGTACT	1 cut(s)	582
Bme1390I	CCNGG	4 cut(s)	147, 564, 650, 777
BmiI	GGNNCC	8 cut(s)	64, 213, 271, 475, 808, 817, 826, 858
BmrFI	CCNGG	4 cut(s)	147, 564, 650, 777
BmrI	ACTGGG	1 cut(s)	752
BmsI	GCATC	1 cut(s)	895
BmtI	GCTAGC	1 cut(s)	722
BmuI	ACTGGG	1 cut(s)	752
BplI	GAGNNNNNCTC	2 cut(s)	853, 885
BpmI	CTGGAG	2 cut(s)	168, 759
Bpu10I	CCTNAGC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	856
BsaJI	CCNNGG	6 cut(s)	47, 224, 563, 648, 762, 820
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 485, 518, 833, 878
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	747
BseBI	CCWGG	4 cut(s)	147, 564, 650, 777
BseDI	CCNNGG	6 cut(s)	47, 224, 563, 648, 762, 820
BseGI	GGATG	4 cut(s)	375, 459, 559, 769
BseLI	CCNNNNNNNGG	5 cut(s)	101, 485, 518, 833, 878
BseMII	CTCAG	2 cut(s)	36, 303
BseNI	ACTGG	1 cut(s)	747
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	2 cut(s)	169, 258
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	2 cut(s)	63, 657
BshFI	GGCC	2 cut(s)	208, 223
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	899
BslI	CCNNNNNNNGG	5 cut(s)	101, 485, 518, 833, 878
BsmAI	GTCTC	1 cut(s)	856
BsmFI	GGGAC	1 cut(s)	899
BsmI	GAATGC	1 cut(s)	653
BsnI	GGCC	2 cut(s)	208, 223
Bso31I	GGTCTC	1 cut(s)	856
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp1407I	TGTACA	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	526, 535, 691
Bsp19I	CCATGG	1 cut(s)	820
BspACI	CCGC	2 cut(s)	180, 800
BspANI	GGCC	2 cut(s)	208, 223
BspCNI	CTCAG	2 cut(s)	35, 302
BspLI	GGNNCC	8 cut(s)	64, 213, 271, 475, 808, 817, 826, 858
BspMI	ACCTGC	2 cut(s)	50, 874
BspOI	GCTAGC	1 cut(s)	722
BspPI	GGATC	2 cut(s)	521, 530
BspTNI	GGTCTC	1 cut(s)	856
BsrFI	RCCGGY	1 cut(s)	208
BsrGI	TGTACA	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	747
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	6 cut(s)	47, 224, 563, 648, 762, 820
BssMI	GATC	3 cut(s)	526, 535, 691
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	3 cut(s)	224, 762, 820
Bst2UI	CCWGG	4 cut(s)	147, 564, 650, 777
Bst4CI	ACNGT	3 cut(s)	48, 299, 362
BstACI	GRCGYC	1 cut(s)	128
BstAUI	TGTACA	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	720
BstDEI	CTNAG	2 cut(s)	22, 289
BstDSI	CCRYGG	2 cut(s)	47, 820
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstF5I	GGATG	4 cut(s)	375, 459, 559, 769
BstKTI	GATC	3 cut(s)	529, 538, 694
BstMAI	GTCTC	1 cut(s)	856
BstMBI	GATC	3 cut(s)	526, 535, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 384
BstNI	CCWGG	4 cut(s)	147, 564, 650, 777
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	4 cut(s)	145, 562, 648, 775
BstV1I	GCAGC	2 cut(s)	169, 258
BstX2I	RGATCY	1 cut(s)	526
BstXI	CCANNNNNNTGG	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	526
BsuI	GTATCC	1 cut(s)	732
BsuRI	GGCC	2 cut(s)	208, 223
BtgI	CCRYGG	2 cut(s)	47, 820
BtsCI	GGATG	4 cut(s)	375, 459, 559, 769
BveI	ACCTGC	2 cut(s)	50, 874
Cac8I	GCNNGC	1 cut(s)	720
Cfr10I	RCCGGY	1 cut(s)	208
CseI	GACGC	2 cut(s)	117, 601
Csp6I	GTAC	3 cut(s)	457, 581, 709
CviAII	CATG	5 cut(s)	388, 502, 667, 803, 821
CviQI	GTAC	3 cut(s)	457, 581, 709
DdeI	CTNAG	2 cut(s)	22, 289
DpnI	GATC	3 cut(s)	528, 537, 693
DpnII	GATC	3 cut(s)	526, 535, 691
DraI	TTTAAA	1 cut(s)	88
Eco130I	CCWWGG	3 cut(s)	224, 762, 820
Eco147I	AGGCCT	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	856
Eco57I	CTGAAG	1 cut(s)	665
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoRII	CCWGG	4 cut(s)	145, 562, 648, 775
EcoT14I	CCWWGG	3 cut(s)	224, 762, 820
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	3 cut(s)	224, 762, 820
FaeI	CATG	5 cut(s)	391, 505, 670, 806, 824
FaqI	GGGAC	1 cut(s)	899
FatI	CATG	5 cut(s)	387, 501, 666, 802, 820
FauNDI	CATATG	2 cut(s)	337, 541
Fnu4HI	GCNGC	2 cut(s)	183, 247
FokI	GGATG	4 cut(s)	382, 466, 546, 756
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	2 cut(s)	183, 247
FspBI	CTAG	4 cut(s)	204, 719, 723, 873
GluI	GCNGC	2 cut(s)	183, 247
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	168, 759
HaeIII	GGCC	2 cut(s)	208, 223
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	2 cut(s)	117, 601
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	5 cut(s)	391, 505, 670, 806, 824
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	2 cut(s)	5, 10
HpaI	GTTAAC	1 cut(s)	607
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	3 cut(s)	169, 783, 861
Hpy188III	TCNNGA	7 cut(s)	132, 303, 312, 321, 435, 524, 699
Hpy8I	GTNNAC	1 cut(s)	607
Hpy99I	CGWCG	1 cut(s)	133
HpyCH4III	ACNGT	3 cut(s)	48, 299, 362
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	3 cut(s)	80, 626, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 384
HpyF3I	CTNAG	2 cut(s)	22, 289
HpySE526I	ACGT	1 cut(s)	317
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	5 cut(s)	391, 505, 670, 806, 824
KspAI	GTTAAC	1 cut(s)	607
Kzo9I	GATC	3 cut(s)	526, 535, 691
LmnI	GCTCC	3 cut(s)	229, 473, 874
Lsp1109I	GCAGC	2 cut(s)	169, 258
LweI	GCATC	1 cut(s)	895
MaeI	CTAG	4 cut(s)	204, 719, 723, 873
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	2 cut(s)	293, 589
MalI	GATC	3 cut(s)	528, 537, 693
MboI	GATC	3 cut(s)	526, 535, 691
MboII	GAAGA	2 cut(s)	423, 671
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	3 cut(s)	153, 621, 627
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	4 cut(s)	87, 606, 750, 792
MspA1I	CMGCKG	2 cut(s)	101, 182
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	4 cut(s)	147, 564, 650, 777
Mva1269I	GAATGC	1 cut(s)	653
MvaI	CCWGG	4 cut(s)	147, 564, 650, 777
MwoI	GCNNNNNNNGC	2 cut(s)	229, 384
NcoI	CCATGG	1 cut(s)	820
NdeI	CATATG	2 cut(s)	337, 541
NdeII	GATC	3 cut(s)	526, 535, 691
NheI	GCTAGC	1 cut(s)	718
NlaIII	CATG	5 cut(s)	391, 505, 670, 806, 824
NlaIV	GGNNCC	8 cut(s)	64, 213, 271, 475, 808, 817, 826, 858
NmuCI	GTSAC	1 cut(s)	589
NspI	RCATGY	1 cut(s)	391
PceI	AGGCCT	1 cut(s)	223
PctI	GAATGC	1 cut(s)	653
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	10
PflMI	CCANNNNNTGG	2 cut(s)	101, 485
PkrI	GCNGC	2 cut(s)	184, 248
Psp6I	CCWGG	4 cut(s)	145, 562, 648, 775
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	4 cut(s)	145, 562, 648, 775
PspN4I	GGNNCC	8 cut(s)	64, 213, 271, 475, 808, 817, 826, 858
PsuI	RGATCY	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	3 cut(s)	458, 582, 710
RsaNI	GTAC	3 cut(s)	457, 581, 709
SaqAI	TTAA	4 cut(s)	87, 606, 750, 792
SatI	GCNGC	2 cut(s)	183, 247
Sau3AI	GATC	3 cut(s)	526, 535, 691
ScaI	AGTACT	1 cut(s)	582
ScrFI	CCNGG	4 cut(s)	147, 564, 650, 777
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	1 cut(s)	895
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	3 cut(s)	153, 621, 627
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	2 cut(s)	180, 800
SspMI	CTAG	4 cut(s)	204, 719, 723, 873
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	4 cut(s)	145, 562, 648, 775
StyI	CCWWGG	3 cut(s)	224, 762, 820
TaaI	ACNGT	3 cut(s)	48, 299, 362
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	2 cut(s)	8, 619
TasI	AATT	3 cut(s)	153, 621, 627
TatI	WGTACW	2 cut(s)	456, 580
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	4 cut(s)	87, 606, 750, 792
Tru9I	TTAA	4 cut(s)	87, 606, 750, 792
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	2 cut(s)	182, 246
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	5 cut(s)	293, 324, 655, 758, 838
TspGWI	ACGGA	3 cut(s)	726, 828, 846
Van91I	CCANNNNNTGG	2 cut(s)	101, 485
XagI	CCTNNNNNAGG	1 cut(s)	516
XceI	RCATGY	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	4 cut(s)	204, 719, 723, 873
ZrmI	AGTACT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.