Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Forward (+)

3644823 .. 3646048

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTATGGTTCATATGGTGGAAGTGGAGGATTATACGGTGGGGGGATGTATGGCAACAACAGCATGTATAGGGGAGGGTATGGTGGTGGTGGTGGGCTTTATGGTTCTTCTGGAATGTATGGAGGTGGGATGTACAATAGTAGTTTAGGAGCCCCAATGGGTGGTTATGGAATGGGCATGGGTGGTCCTTATGGAGGTCAAGATCCAAATGATCCATATGGTCCTCCTCCATCTCATCCAGGGTTTTGGATTTCAGTACTTCGGGTGACGCAAGGTGTGGTTAACTTTTTTGGTCGAATTGCAATTCTCATAGACCAGAACACCCAGGCATTCCATTTGTTCATGTCTGCACTTCTACAGCTTTTTGATCGTTCTGGATTATTGTACGGAGAGCTAGCTAGATTTGTATTCAGGATGCTGGGAGTTAAAACAAAATCCAAGGTTCATCCTCCAGGTCCGAACGGGTTTAACGGACCGCATGGACCCAACGGACCCCATGGACCCTACGGAGGAAACCAGAACTTCATTGAGGGTCCGAGACCTGCTCCTAGTGGTGGTTGGGACAATGTTTGGGAAAATGATGCCGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

20.57

Weight (kDa)

8.78

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	550
AccB7I	CCANNNNNTGG	1 cut(s)	161
AciI	CCGC	1 cut(s)	476
AclWI	GGATC	2 cut(s)	197, 206
AfaI	GTAC	3 cut(s)	134, 258, 386
AfiI	CCNNNNNNNGG	4 cut(s)	161, 194, 509, 554
AjnI	CCWGG	3 cut(s)	238, 324, 451
AluBI	AGCT	3 cut(s)	361, 394, 398
AluI	AGCT	3 cut(s)	361, 394, 398
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	2 cut(s)	197, 206
AspS9I	GGNCC	8 cut(s)	185, 221, 455, 473, 482, 491, 500, 533
AsuHPI	GGTGA	1 cut(s)	277
AsuNHI	GCTAGC	1 cut(s)	394
AvaII	GGWCC	8 cut(s)	185, 221, 455, 473, 482, 491, 500, 533
BanII	GRGCYC	1 cut(s)	154
BccI	CCATC	1 cut(s)	238
BciT130I	CCWGG	3 cut(s)	240, 326, 453
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	3 cut(s)	395, 399, 549
BfmI	CTRYAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	550
BmcAI	AGTACT	1 cut(s)	258
Bme1390I	CCNGG	3 cut(s)	240, 326, 453
Bme18I	GGWCC	8 cut(s)	185, 221, 455, 473, 482, 491, 500, 533
BmgT120I	GGNCC	8 cut(s)	185, 221, 455, 473, 482, 491, 500, 533
BmiI	GGNNCC	5 cut(s)	151, 484, 493, 502, 534
BmrFI	CCNGG	3 cut(s)	240, 326, 453
BmsI	GCATC	2 cut(s)	405, 571
BmtI	GCTAGC	1 cut(s)	398
BplI	GAGNNNNNCTC	2 cut(s)	529, 561
BpmI	CTGGAG	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	532
BsaJI	CCNNGG	4 cut(s)	239, 324, 438, 496
Bsc4I	CCNNNNNNNGG	4 cut(s)	161, 194, 509, 554
Bse118I	RCCGGY	1 cut(s)	584
BseBI	CCWGG	3 cut(s)	240, 326, 453
BseDI	CCNNGG	4 cut(s)	239, 324, 438, 496
BseGI	GGATG	5 cut(s)	51, 135, 235, 420, 445
BseLI	CCNNNNNNNGG	4 cut(s)	161, 194, 509, 554
BseRI	GAGGAG	1 cut(s)	216
BseYI	CCCAGC	1 cut(s)	418
BsgI	GTGCAG	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	4 cut(s)	161, 194, 509, 554
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	575
BsmI	GAATGC	1 cut(s)	329
Bso31I	GGTCTC	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	202, 211, 367
Bsp19I	CCATGG	1 cut(s)	496
BspACI	CCGC	1 cut(s)	476
BspLI	GGNNCC	5 cut(s)	151, 484, 493, 502, 534
BspMI	ACCTGC	1 cut(s)	550
BspOI	GCTAGC	1 cut(s)	398
BspPI	GGATC	2 cut(s)	197, 206
BspTNI	GGTCTC	1 cut(s)	532
BsrFI	RCCGGY	1 cut(s)	584
BsrGI	TGTACA	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	4 cut(s)	239, 324, 438, 496
BssMI	GATC	3 cut(s)	202, 211, 367
BssT1I	CCWWGG	2 cut(s)	438, 496
Bst2UI	CCWGG	3 cut(s)	240, 326, 453
Bst4CI	ACNGT	1 cut(s)	38
BstAUI	TGTACA	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	396
BstDSI	CCRYGG	1 cut(s)	496
BstENI	CCTNNNNNAGG	1 cut(s)	192
BstF5I	GGATG	5 cut(s)	51, 135, 235, 420, 445
BstKTI	GATC	3 cut(s)	205, 214, 370
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	3 cut(s)	202, 211, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNI	CCWGG	3 cut(s)	240, 326, 453
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	3 cut(s)	238, 324, 451
BstSFI	CTRYAG	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	496
BtsCI	GGATG	5 cut(s)	51, 135, 235, 420, 445
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	8 cut(s)	185, 221, 455, 473, 482, 491, 500, 533
CpoI	CGGWCCG	1 cut(s)	473
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	3 cut(s)	133, 257, 385
CspI	CGGWCCG	1 cut(s)	473
CviAII	CATG	5 cut(s)	64, 178, 343, 479, 497
CviJI	RGCY	5 cut(s)	97, 152, 361, 394, 398
CviKI_1	RGCY	5 cut(s)	97, 152, 361, 394, 398
CviQI	GTAC	3 cut(s)	133, 257, 385
DpnI	GATC	3 cut(s)	204, 213, 369
DpnII	GATC	3 cut(s)	202, 211, 367
Eco130I	CCWWGG	2 cut(s)	438, 496
Eco24I	GRGCYC	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	532
Eco47I	GGWCC	8 cut(s)	185, 221, 455, 473, 482, 491, 500, 533
EcoNI	CCTNNNNNAGG	1 cut(s)	192
EcoRII	CCWGG	3 cut(s)	238, 324, 451
EcoT14I	CCWWGG	2 cut(s)	438, 496
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	2 cut(s)	438, 496
FaeI	CATG	5 cut(s)	67, 181, 346, 482, 500
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	5 cut(s)	63, 177, 342, 478, 496
FauNDI	CATATG	2 cut(s)	13, 217
FokI	GGATG	5 cut(s)	58, 142, 222, 427, 432
FriOI	GRGCYC	1 cut(s)	154
FspBI	CTAG	3 cut(s)	395, 399, 549
GsaI	CCCAGC	1 cut(s)	422
GsuI	CTGGAG	1 cut(s)	435
HapII	CCGG	1 cut(s)	585
HgaI	GACGC	1 cut(s)	277
Hin1II	CATG	5 cut(s)	67, 181, 346, 482, 500
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HpaI	GTTAAC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	459, 537
Hpy188III	TCNNGA	4 cut(s)	111, 200, 375, 412
Hpy8I	GTNNAC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	302, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	67, 181, 346, 482, 500
KspAI	GTTAAC	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	202, 211, 367
LmnI	GCTCC	2 cut(s)	149, 550
LweI	GCATC	2 cut(s)	405, 571
MaeI	CTAG	3 cut(s)	395, 399, 549
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	3 cut(s)	204, 213, 369
MboI	GATC	3 cut(s)	202, 211, 367
MboII	GAAGA	1 cut(s)	99
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	2 cut(s)	297, 303
MnlI	CCTC	9 cut(s)	20, 68, 116, 188, 234, 237, 459, 503, 523
MseI	TTAA	3 cut(s)	282, 426, 468
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	3 cut(s)	240, 326, 453
Mva1269I	GAATGC	1 cut(s)	329
MvaI	CCWGG	3 cut(s)	240, 326, 453
MwoI	GCNNNNNNNGC	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	496
NdeI	CATATG	2 cut(s)	13, 217
NdeII	GATC	3 cut(s)	202, 211, 367
NheI	GCTAGC	1 cut(s)	394
NlaIII	CATG	5 cut(s)	67, 181, 346, 482, 500
NlaIV	GGNNCC	5 cut(s)	151, 484, 493, 502, 534
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	67
PctI	GAATGC	1 cut(s)	329
PflMI	CCANNNNNTGG	1 cut(s)	161
Psp6I	CCWGG	3 cut(s)	238, 324, 451
PspFI	CCCAGC	1 cut(s)	418
PspGI	CCWGG	3 cut(s)	238, 324, 451
PspN4I	GGNNCC	5 cut(s)	151, 484, 493, 502, 534
PspPI	GGNCC	8 cut(s)	185, 221, 455, 473, 482, 491, 500, 533
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	3 cut(s)	134, 258, 386
RsaNI	GTAC	3 cut(s)	133, 257, 385
Rsr2I	CGGWCCG	1 cut(s)	473
RsrII	CGGWCCG	1 cut(s)	473
SaqAI	TTAA	3 cut(s)	282, 426, 468
Sau3AI	GATC	3 cut(s)	202, 211, 367
Sau96I	GGNCC	8 cut(s)	185, 221, 455, 473, 482, 491, 500, 533
ScaI	AGTACT	1 cut(s)	258
ScrFI	CCNGG	3 cut(s)	240, 326, 453
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	9 cut(s)	127, 199, 277, 363, 396, 400, 444, 457, 544
SfaNI	GCATC	2 cut(s)	405, 571
SfcI	CTRYAG	1 cut(s)	356
SinI	GGWCC	8 cut(s)	185, 221, 455, 473, 482, 491, 500, 533
Sse9I	AATT	2 cut(s)	297, 303
SsiI	CCGC	1 cut(s)	476
SspMI	CTAG	3 cut(s)	395, 399, 549
StyD4I	CCNGG	3 cut(s)	238, 324, 451
StyI	CCWWGG	2 cut(s)	438, 496
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	295
TasI	AATT	2 cut(s)	297, 303
TatI	WGTACW	2 cut(s)	132, 256
Tru1I	TTAA	3 cut(s)	282, 426, 468
Tru9I	TTAA	3 cut(s)	282, 426, 468
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	331, 434, 514
TspGWI	ACGGA	4 cut(s)	402, 486, 504, 522
Van91I	CCANNNNNTGG	1 cut(s)	161
VpaK11BI	GGWCC	8 cut(s)	185, 221, 455, 473, 482, 491, 500, 533
XagI	CCTNNNNNAGG	1 cut(s)	192
XceI	RCATGY	1 cut(s)	67
XspI	CTAG	3 cut(s)	395, 399, 549
ZrmI	AGTACT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.