Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004393

Physical Location & Seq

Genomic Coordinates Forward (+)

43333166 .. 43333848

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG393300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGACCGCTCTACTTCAGCTTTTTGATCGCTCTGGTCCATTCTATGGAGAGCTAGGTAGGTTTGTATTGAGGACATTGGGAGTCAGAACAAAACCCAAGATGGGACCTCCAGCAGGTCCCAATGGGCTTCCATTCTCTGGGCCCGGCGGTGCACCTGAGAACCGAAACTACATTGAGGGACCAAAGGCCGCTCCTAGTGGTTCCTGGGATAATGTTTGGGGAAATGATACCAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

8.4

Weight (kDa)

9.69

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07560
fragaria_vesca	FvH4_5g32960 FvH4_5g32960 FvH4_5g32960
malus_domestica	MD00G1127600.v1.1 MD04G1046700.v1.1
prunus_persica	Prupe.1G200400_v2.0.a1
pyrus_communis	pycom04g04050
rosa_chinensis	RchiOBHm_Chr1g0340971 RchiOBHm_Chr7g0230961
rosa_laevigata	RLG00000001437 RLG00000029056
rosa_multiflora	Rmu_sc0000483.1_g000038 Rmu_sc0001211.1_g000082 Rmu_sc0002200.1_g000045
rosa_roxburghii	Rroxscaffold_3G00229620 Rroxscaffold_4G00311630
rosa_rugosa	Rorug01G0160400.1 Rorug07G0263700 Rorug07G0263800
rosa_samantha	Rh1AG175000 Rh1BG143400 Rh1CG163000 Rh1DG175000 Rh7AG417100 Rh7BG393000 Rh7BG393300 Rh7CG436500 Rh7DG411300 Rh7DG411400
rosa_wichuraiana	Rw1G014710 Rw7G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	104
AccB7I	CCANNNNNTGG	2 cut(s)	44, 137
AccBSI	CCGCTC	2 cut(s)	8, 191
AciI	CCGC	3 cut(s)	6, 147, 189
AfiI	CCNNNNNNNGG	4 cut(s)	44, 101, 113, 137
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	2 cut(s)	19, 52
AluI	AGCT	2 cut(s)	19, 52
Alw21I	GWGCWC	1 cut(s)	154
Alw44I	GTGCAC	1 cut(s)	150
AoxI	GGCC	2 cut(s)	140, 186
ApaI	GGGCCC	1 cut(s)	144
ApaLI	GTGCAC	1 cut(s)	150
AspS9I	GGNCC	6 cut(s)	35, 104, 116, 140, 141, 179
AsuC2I	CCSGG	1 cut(s)	144
AvaII	GGWCC	4 cut(s)	35, 104, 116, 179
BaeGI	GKGCMC	2 cut(s)	144, 154
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	154
BccI	CCATC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	144
BfaI	CTAG	2 cut(s)	53, 195
BfuAI	ACCTGC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	144, 205
Bme18I	GGWCC	4 cut(s)	35, 104, 116, 179
BmgT120I	GGNCC	6 cut(s)	35, 104, 116, 140, 141, 179
BmiI	GGNNCC	5 cut(s)	105, 118, 142, 180, 202
BmrFI	CCNGG	2 cut(s)	144, 205
BpmI	CTGGAG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 101, 113, 137
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	4 cut(s)	44, 101, 113, 137
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	2 cut(s)	144, 154
BshFI	GGCC	2 cut(s)	142, 188
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	3 cut(s)	102, 117, 192
BslI	CCNNNNNNNGG	4 cut(s)	44, 101, 113, 137
BsmFI	GGGAC	3 cut(s)	102, 117, 192
BsnI	GGCC	2 cut(s)	142, 188
Bsp120I	GGGCCC	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	144, 154
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	3 cut(s)	6, 147, 189
BspANI	GGCC	2 cut(s)	142, 188
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	5 cut(s)	105, 118, 142, 180, 202
BspMI	ACCTGC	1 cut(s)	104
BsrBI	CCGCTC	2 cut(s)	8, 191
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	156
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	142, 203
BstSLI	GKGCMC	2 cut(s)	144, 154
BsuRI	GGCC	2 cut(s)	142, 188
BveI	ACCTGC	1 cut(s)	104
Cfr13I	GGNCC	6 cut(s)	35, 104, 116, 140, 141, 179
CviJI	RGCY	5 cut(s)	19, 52, 127, 142, 188
CviKI_1	RGCY	5 cut(s)	19, 52, 127, 142, 188
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	144
Eco47I	GGWCC	4 cut(s)	35, 104, 116, 179
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoO109I	RGGNCCY	2 cut(s)	104, 116
EcoRII	CCWGG	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	144
FaiI	YATR	1 cut(s)	45
FaqI	GGGAC	3 cut(s)	102, 117, 192
Fnu4HI	GCNGC	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	53, 195
GluI	GCNGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	142, 188
HapII	CCGG	1 cut(s)	144
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	152
HpyCH4V	TGCA	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	8 cut(s)	18, 99, 123, 123, 157, 168, 190, 217
MaeI	CTAG	2 cut(s)	53, 195
MalI	GATC	1 cut(s)	27
MbiI	CCGCTC	2 cut(s)	8, 191
MboI	GATC	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	144, 154
MlyI	GAGTC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	63, 117, 169
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	144, 205
MvaI	CCWGG	1 cut(s)	205
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	1 cut(s)	25
NlaIV	GGNNCC	5 cut(s)	105, 118, 142, 180, 202
PflMI	CCANNNNNTGG	2 cut(s)	44, 137
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PpuMI	RGGWCCY	2 cut(s)	104, 116
Psp5II	RGGWCCY	2 cut(s)	104, 116
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	5 cut(s)	105, 118, 142, 180, 202
PspOMI	GGGCCC	1 cut(s)	140
PspPI	GGNCC	6 cut(s)	35, 104, 116, 140, 141, 179
PspPPI	RGGWCCY	2 cut(s)	104, 116
PsrI	GAACNNNNNNTAC	2 cut(s)	152, 184
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	6 cut(s)	35, 104, 116, 140, 141, 179
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	2 cut(s)	144, 205
SduI	GDGCHC	2 cut(s)	144, 154
SetI	ASST	7 cut(s)	21, 54, 58, 62, 109, 118, 157
SinI	GGWCC	4 cut(s)	35, 104, 116, 179
SsiI	CCGC	3 cut(s)	6, 147, 189
SspMI	CTAG	2 cut(s)	53, 195
StyD4I	CCNGG	2 cut(s)	142, 203
TauI	GCSGC	1 cut(s)	191
Van91I	CCANNNNNTGG	2 cut(s)	44, 137
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	4 cut(s)	35, 104, 116, 179
XagI	CCTNNNNNAGG	1 cut(s)	111
XspI	CTAG	2 cut(s)	53, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.