Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Reverse (-)

2489387 .. 2491180

Gene Structure 1794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCGACTCTCAAAGCTTCCTTTTTGATCAAAACCCTCGACAGTGACGTCACCGGAGATTTTCTCTCCGATCTGGAACGTCGTGGGTCAGGTGCTGTTCATGTTATCATGGGTCCTATGTTTTCTGGGAAATCGACCTCTCTCCTTCGCCGAATCAAGTCAGAGATCAGCGACGGAAGAAGTGTTGCGATGCTGAAATCGAGTAAGGATACGAGATACGCAAAAGATTCGGTGGTGACACATGATGGAATTGGATTCCCTTGCTGGGCTCTTCCAGATCTCATGTCATTTCCTGAGAAATTCGGACTAGATGCTTATAACAAGCTTGATGTGATTGGTATTGATGAGGCTCAGTTCTTTGGAGATCTTTATGAGTTTTGCTGCAAAGTCGCTGATGATGATGGTAAAATTGTGATCGTTGCTGGCCTAGATGGTGACTATTTAAGGAGGAGTTTTGGGGCTGTACTTGACATTATACCAATAGCTGATTCTGTGACTAAGCTAACTGCAAGGTGTGAGGTCTGTGGACATAAAGCTTTCTTCACTTTAAGAAAGAATTGTGACACCAGAACTGAGCTTATTGGTGGAGCTGATGTCTATATGCCTGTTTGTCGCAAGCATTACATCACTAATCATATTGTTATTAAAGCCTCTAAGAAAGTCTTGGAAGATTCTGACAAGGCTAGAGCTGAATCCTGTGTTGCTGCTACAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0005488 GO:0005515 GO:0006139 GO:0006213 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0033554 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

238

Amino Acids

26.08

Weight (kDa)

6.52

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	31 - 208	1e-52	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AasI	GACNNNNNNGTC	1 cut(s)	47
AatII	GACGTC	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	472, 504
AluBI	AGCT	8 cut(s)	17, 325, 485, 502, 536, 577, 590, 689
AluI	AGCT	8 cut(s)	17, 325, 485, 502, 536, 577, 590, 689
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	381, 704
ApoI	RAATTY	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	43, 247, 446
AvaII	GGWCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	368, 691
BccI	CCATC	3 cut(s)	239, 395, 425
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciVI	GTATCC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	27
BfaI	CTAG	3 cut(s)	308, 428, 684
BfuI	GTATCC	1 cut(s)	202
BglII	AGATCT	2 cut(s)	277, 364
BisI	GCNGC	2 cut(s)	382, 705
BlsI	GCNGC	2 cut(s)	383, 706
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	2 cut(s)	180, 301
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BsaHI	GRCGYC	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	3 cut(s)	285, 365, 564
BseRI	GAGGAG	1 cut(s)	463
BseXI	GCAGC	2 cut(s)	368, 691
BseYI	CCCAGC	1 cut(s)	264
BshFI	GGCC	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	265
BsnI	GGCC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	6 cut(s)	27, 70, 165, 277, 364, 414
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	3 cut(s)	286, 364, 565
BspLI	GGNNCC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	276
BssMI	GATC	6 cut(s)	27, 70, 165, 277, 364, 414
BssNI	GRCGYC	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	424, 617
BstDEI	CTNAG	5 cut(s)	294, 351, 498, 573, 654
BstKTI	GATC	6 cut(s)	30, 73, 168, 280, 367, 417
BstMBI	GATC	6 cut(s)	27, 70, 165, 277, 364, 414
BstV1I	GCAGC	2 cut(s)	368, 691
BstX2I	RGATCY	2 cut(s)	277, 364
BstYI	RGATCY	2 cut(s)	277, 364
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	426
BtgZI	GCGATG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	2 cut(s)	424, 617
CaiI	CAGNNNCTG	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	4 cut(s)	101, 109, 242, 283
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	5 cut(s)	294, 351, 498, 573, 654
DpnI	GATC	6 cut(s)	29, 72, 167, 279, 366, 416
DpnII	GATC	6 cut(s)	27, 70, 165, 277, 364, 414
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	4 cut(s)	104, 112, 245, 286
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FatI	CATG	4 cut(s)	100, 108, 241, 282
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	382, 705
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	2 cut(s)	382, 705
FspBI	CTAG	3 cut(s)	308, 428, 684
GluI	GCNGC	2 cut(s)	382, 705
GsaI	CCCAGC	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	4 cut(s)	104, 112, 245, 286
HindIII	AAGCTT	3 cut(s)	15, 323, 534
HinfI	GANTC	7 cut(s)	7, 153, 227, 255, 488, 671, 692
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	3 cut(s)	43, 247, 446
Hpy166II	GTNNAC	1 cut(s)	527
Hpy188I	TCNGA	4 cut(s)	70, 163, 305, 676
Hpy188III	TCNNGA	3 cut(s)	74, 275, 293
Hpy8I	GTNNAC	1 cut(s)	527
Hpy99I	CGWCG	2 cut(s)	84, 176
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	2 cut(s)	48, 79
HpyCH4V	TGCA	2 cut(s)	384, 509
HpyF3I	CTNAG	5 cut(s)	294, 351, 498, 573, 654
HpySE526I	ACGT	2 cut(s)	48, 79
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	4 cut(s)	104, 112, 245, 286
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	6 cut(s)	27, 70, 165, 277, 364, 414
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	587
Lsp1109I	GCAGC	2 cut(s)	368, 691
LweI	GCATC	2 cut(s)	180, 301
MaeI	CTAG	3 cut(s)	308, 428, 684
MaeII	ACGT	2 cut(s)	48, 79
MaeIII	GTNAC	6 cut(s)	44, 49, 235, 434, 493, 560
MalI	GATC	6 cut(s)	29, 72, 167, 279, 366, 416
MboI	GATC	6 cut(s)	27, 70, 165, 277, 364, 414
MboII	GAAGA	4 cut(s)	189, 263, 532, 680
MflI	RGATCY	2 cut(s)	277, 364
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	4 cut(s)	249, 299, 408, 556
MnlI	CCTC	6 cut(s)	47, 148, 340, 441, 511, 661
MseI	TTAA	3 cut(s)	443, 548, 645
MspI	CCGG	1 cut(s)	54
NdeII	GATC	6 cut(s)	27, 70, 165, 277, 364, 414
NlaIII	CATG	4 cut(s)	104, 112, 245, 286
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	6 cut(s)	44, 49, 235, 434, 493, 560
PciSI	GCTCTTC	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	6 cut(s)	153, 227, 255, 488, 671, 692
PkrI	GCNGC	2 cut(s)	383, 706
PpuMI	RGGWCCY	1 cut(s)	113
PsiI	TTATAA	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	113
PspPPI	RGGWCCY	1 cut(s)	113
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	277, 364
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	443, 548, 645
SatI	GCNGC	2 cut(s)	382, 705
Sau3AI	GATC	6 cut(s)	27, 70, 165, 277, 364, 414
Sau96I	GGNCC	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	271
SfaNI	GCATC	2 cut(s)	180, 301
SinI	GGWCC	1 cut(s)	113
Sse9I	AATT	4 cut(s)	249, 299, 408, 556
SspMI	CTAG	3 cut(s)	308, 428, 684
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	2 cut(s)	51, 82
TaqI	TCGA	3 cut(s)	39, 134, 200
TasI	AATT	4 cut(s)	249, 299, 408, 556
TatI	WGTACW	1 cut(s)	463
TfiI	GAWTC	6 cut(s)	153, 227, 255, 488, 671, 692
Tru1I	TTAA	3 cut(s)	443, 548, 645
Tru9I	TTAA	3 cut(s)	443, 548, 645
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	6 cut(s)	44, 49, 235, 434, 493, 560
TseI	GCWGC	2 cut(s)	381, 704
Tsp45I	GTSAC	6 cut(s)	44, 49, 235, 434, 493, 560
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	299
XspI	CTAG	3 cut(s)	308, 428, 684
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.