Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000286.1

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Reverse (-)

143879 .. 144388

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000286.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgaaactcttcctcttcccatcttctctctccttctcttccctaattttcaatcccttttctcactgtaaccctaaatccatggcctccttcaaacccacaatccccctgaccagcgaatccgccccttcccgccgccccccctcgggcgaggtccacgtcatcatgggtcccatgttcgccggcaagaccaccgctctcctgcgccggatcaagtccgagggagccaacggcaggaatgtggcgatgataaaatcgagcaaggataacagatacgccgtcgattcggtggtgactcatgatggggcgaaatttccatgctgggctctgccggatctgtcctcctttaggcacaaatttggaggtgatgcttatgataaggtaattttggagctgggtaatatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

135

Amino Acids

14.78

Weight (kDa)

9.74

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	197
AciI	CCGC	4 cut(s)	123, 133, 136, 195
AclWI	GGATC	2 cut(s)	218, 342
AcsI	RAATTY	2 cut(s)	311, 356
AfiI	CCNNNNNNNGG	4 cut(s)	145, 146, 234, 348
AgsI	TTSAA	2 cut(s)	52, 94
AjiI	CACGTC	1 cut(s)	160
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
AlwI	GGATC	2 cut(s)	218, 342
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	1 cut(s)	84
ApoI	RAATTY	2 cut(s)	311, 356
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	154, 170
AsuHPI	GGTGA	2 cut(s)	304, 377
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	154, 170
BanII	GRGCYC	1 cut(s)	328
BccI	CCATC	2 cut(s)	28, 296
BceAI	ACGGC	2 cut(s)	247, 263
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme18I	GGWCC	2 cut(s)	154, 170
BmeT110I	CYCGRG	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	154, 170
BmiI	GGNNCC	3 cut(s)	171, 172, 226
BmsI	GCATC	1 cut(s)	358
BsaJI	CCNNGG	3 cut(s)	81, 144, 219
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 146, 234, 348
Bse118I	RCCGGY	1 cut(s)	182
BseDI	CCNNGG	3 cut(s)	81, 144, 219
BseLI	CCNNNNNNNGG	4 cut(s)	145, 146, 234, 348
BseYI	CCCAGC	2 cut(s)	321, 394
BshFI	GGCC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	183, 208, 332
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	4 cut(s)	145, 146, 234, 348
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	210, 334
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	4 cut(s)	123, 133, 136, 195
BspANI	GGCC	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	171, 172, 226
BspPI	GGATC	2 cut(s)	218, 342
BsrBI	CCGCTC	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	81, 144, 219
BssMI	GATC	2 cut(s)	210, 334
BssT1I	CCWWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	3 cut(s)	14, 20, 43
BstC8I	GCNNGC	1 cut(s)	184
BstDSI	CCRYGG	1 cut(s)	81
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	2 cut(s)	213, 337
BstMBI	GATC	2 cut(s)	210, 334
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	260
BtrI	CACGTC	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	184
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	1 cut(s)	207
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	154, 170
CviAII	CATG	5 cut(s)	82, 166, 175, 299, 318
CviJI	RGCY	4 cut(s)	86, 227, 326, 394
CviKI_1	RGCY	4 cut(s)	86, 227, 326, 394
DpnI	GATC	2 cut(s)	212, 336
DpnII	GATC	2 cut(s)	210, 334
Eam1104I	CTCTTC	3 cut(s)	14, 20, 43
EarI	CTCTTC	3 cut(s)	14, 20, 43
EciI	GGCGGA	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	154, 170
Eco88I	CYCGRG	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	5 cut(s)	85, 169, 178, 302, 321
FaiI	YATR	8 cut(s)	83, 167, 176, 300, 319, 375, 404, 406
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	5 cut(s)	81, 165, 174, 298, 317
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	1 cut(s)	136
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	1 cut(s)	136
GsaI	CCCAGC	2 cut(s)	325, 398
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	3 cut(s)	183, 208, 332
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	5 cut(s)	85, 169, 178, 302, 321
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HinfI	GANTC	3 cut(s)	119, 284, 295
HpaII	CCGG	3 cut(s)	183, 208, 332
HphI	GGTGA	2 cut(s)	304, 377
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	3 cut(s)	43, 100, 138
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	5 cut(s)	85, 169, 178, 302, 321
HspAI	GCGC	1 cut(s)	205
KflI	GGGWCCC	1 cut(s)	170
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	210, 334
LmnI	GCTCC	2 cut(s)	224, 391
LpnPI	CCDG	9 cut(s)	122, 127, 196, 215, 220, 221, 307, 345, 380
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	68, 292
MalI	GATC	2 cut(s)	212, 336
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	2 cut(s)	210, 334
MboII	GAAGA	3 cut(s)	7, 15, 30
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	4 cut(s)	45, 311, 356, 384
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	7 cut(s)	23, 97, 145, 154, 214, 352, 356
MroNI	GCCGGC	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	8
MspI	CCGG	3 cut(s)	183, 208, 332
NaeI	GCCGGC	1 cut(s)	184
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	2 cut(s)	210, 334
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	5 cut(s)	85, 169, 178, 302, 321
NlaIV	GGNNCC	3 cut(s)	171, 172, 226
NmuCI	GTSAC	1 cut(s)	292
PagI	TCATGA	1 cut(s)	298
PdiI	GCCGGC	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	119, 284
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PpuMI	RGGWCCY	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	170
PspFI	CCCAGC	2 cut(s)	321, 394
PspN4I	GGNNCC	3 cut(s)	171, 172, 226
PspPI	GGNCC	2 cut(s)	154, 170
PspPPI	RGGWCCY	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	334
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	2 cut(s)	210, 334
Sau96I	GGNCC	2 cut(s)	154, 170
SchI	GAGTC	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	5 cut(s)	156, 162, 367, 384, 396
SfaNI	GCATC	1 cut(s)	358
SinI	GGWCC	2 cut(s)	154, 170
Sse9I	AATT	4 cut(s)	45, 311, 356, 384
SsiI	CCGC	4 cut(s)	123, 133, 136, 195
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	2 cut(s)	257, 282
TasI	AATT	4 cut(s)	45, 311, 356, 384
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	119, 284
TscAI	CASTG	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	71
VpaK11BI	GGWCC	2 cut(s)	154, 170
XagI	CCTNNNNNAGG	1 cut(s)	346
XapI	RAATTY	2 cut(s)	311, 356
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.