Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Forward (+)

4901717 .. 4902252

Gene Structure 536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGGTCCCATGTTCGCCGGCAAGACCACCGCTCTCCTTCGTCGGATCAAGTCTGAGGGCGCTAGCGGAAGAAATGTGGTGATGACAAATTCGAACAAGGATAACAGATACGCAGTTGATTTGGTGGTGATTCATGATCGGGCCAAATTTTCGTGCTGGGATTTACCGGATCTGTCATCGTTTAGGCTCAAATTTGAAGTCATGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

70

Amino Acids

7.84

Weight (kDa)

9.74

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	1 - 51	6.9e-11	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	32
AciI	CCGC	2 cut(s)	30, 66
AclWI	GGATC	2 cut(s)	53, 177
AcsI	RAATTY	3 cut(s)	88, 146, 191
AgsI	TTSAA	1 cut(s)	197
AlwI	GGATC	2 cut(s)	53, 177
AoxI	GGCC	1 cut(s)	141
ApoI	RAATTY	3 cut(s)	88, 146, 191
ArsI	GACNNNNNNTTYG	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	5, 141
AsuHPI	GGTGA	2 cut(s)	91, 139
AsuII	TTCGAA	1 cut(s)	92
AsuNHI	GCTAGC	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	63
BfoI	RGCGCY	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 141
BmiI	GGNNCC	2 cut(s)	6, 7
BmtI	GCTAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	45
BseYI	CCCAGC	1 cut(s)	156
BshFI	GGCC	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	18, 167
BsnI	GGCC	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	92
Bsp143I	GATC	3 cut(s)	45, 136, 169
BspACI	CCGC	2 cut(s)	30, 66
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	6, 7
BspOI	GCTAGC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	53, 177
BspT104I	TTCGAA	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssMI	GATC	3 cut(s)	45, 136, 169
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	19, 64
BstDEI	CTNAG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	3 cut(s)	48, 139, 172
BstMBI	GATC	3 cut(s)	45, 136, 169
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	19, 64
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	5, 141
CviAII	CATG	3 cut(s)	10, 134, 202
CviJI	RGCY	2 cut(s)	143, 187
CviKI_1	RGCY	2 cut(s)	143, 187
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	3 cut(s)	47, 138, 171
DpnII	GATC	3 cut(s)	45, 136, 169
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
FaeI	CATG	3 cut(s)	13, 137, 205
FaiI	YATR	3 cut(s)	11, 135, 203
FatI	CATG	3 cut(s)	9, 133, 201
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	1 cut(s)	61
GsaI	CCCAGC	1 cut(s)	160
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	2 cut(s)	18, 167
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	13, 137, 205
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	2 cut(s)	18, 167
HphI	GGTGA	2 cut(s)	91, 139
Hpy188I	TCNGA	2 cut(s)	45, 55
Hpy188III	TCNNGA	1 cut(s)	134
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	13, 137, 205
HspAI	GCGC	1 cut(s)	60
KflI	GGGWCCC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	45, 136, 169
LpnPI	CCDG	3 cut(s)	31, 142, 180
MaeI	CTAG	1 cut(s)	63
MalI	GATC	3 cut(s)	47, 138, 171
MbiI	CCGCTC	1 cut(s)	32
MboI	GATC	3 cut(s)	45, 136, 169
MboII	GAAGA	1 cut(s)	81
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	3 cut(s)	88, 146, 191
MmeI	TCCRAC	1 cut(s)	23
MnlI	CCTC	1 cut(s)	49
MroNI	GCCGGC	1 cut(s)	17
MseI	TTAA	1 cut(s)	208
MspI	CCGG	2 cut(s)	18, 167
NaeI	GCCGGC	1 cut(s)	19
NdeII	GATC	3 cut(s)	45, 136, 169
NgoMIV	GCCGGC	1 cut(s)	17
NheI	GCTAGC	1 cut(s)	62
NlaIII	CATG	3 cut(s)	13, 137, 205
NlaIV	GGNNCC	2 cut(s)	6, 7
NspV	TTCGAA	1 cut(s)	92
PagI	TCATGA	1 cut(s)	133
PdiI	GCCGGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	6, 7
PspPI	GGNCC	2 cut(s)	5, 141
PspPPI	RGGWCCY	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	208
Sau3AI	GATC	3 cut(s)	45, 136, 169
Sau96I	GGNCC	2 cut(s)	5, 141
SfuI	TTCGAA	1 cut(s)	92
SinI	GGWCC	1 cut(s)	5
Sse9I	AATT	3 cut(s)	88, 146, 191
SsiI	CCGC	2 cut(s)	30, 66
SspMI	CTAG	1 cut(s)	63
TaqI	TCGA	1 cut(s)	92
TasI	AATT	3 cut(s)	88, 146, 191
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	208
Tru9I	TTAA	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	3 cut(s)	88, 146, 191
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.