Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Reverse (-)

67884233 .. 67886110

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG506900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATAAAATCGAGCAAGGATAACAGATACGCCGTCGATTCGGTGGTGACTCATGATGGGGCGAAATTTCCATGCTGGGCTCTGCCGGATCTGTCCTCGTTTAGGCACAAATTTGGAGGTGATGCTTATGATAAGCTTGATGTTATTGGTATCGATGAGGCTCAATTTTTCGAAGATCTATATGATTTCTGCTGCACGGCTGCTGATCATGATGGGAAAACTGTGATTGTTGCAGGCTTGGATGGTGATTACTTAAGGAAAAGCTTTGGCTCGGTGCTTGATGTAGTGCCTCTTGCTGATACAGTGACCAAATTGACAGCTCGATGTGAAATGTGTGGCAAACGAGCTTTCTTTACCCTGAGGAAGACGGAGGAGACGAAGACTGAACTGATTGGCGGGGCTGATGTCTACATGCCTGTTTGTCGCCAACACTATGTCAATGGACAAGTTCTCATCAAATCTGCAAGAAGTGTTGTGGAGTCTCATAAATTTAAGAGTGGCACCATTTCAGAAGCTGCTGCAGTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

176

Amino Acids

19.37

Weight (kDa)

5.94

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	1 - 145	1.6e-41	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	408
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	3 cut(s)	65, 110, 488
AfiI	CCNNNNNNNGG	1 cut(s)	102
AflII	CTTAAG	1 cut(s)	253
AluBI	AGCT	5 cut(s)	136, 264, 320, 347, 515
AluI	AGCT	5 cut(s)	136, 264, 320, 347, 515
Alw26I	GTCTC	2 cut(s)	368, 486
AlwI	GGATC	1 cut(s)	96
AlwNI	CAGNNNCTG	1 cut(s)	515
ApeKI	GCWGC	4 cut(s)	192, 200, 515, 518
ApoI	RAATTY	3 cut(s)	65, 110, 488
AsuHPI	GGTGA	3 cut(s)	58, 131, 257
AsuII	TTCGAA	1 cut(s)	171
AxyI	CCTNAGG	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	82
BbsI	GAAGAC	2 cut(s)	371, 386
BbvI	GCAGC	4 cut(s)	179, 187, 502, 505
BccI	CCATC	3 cut(s)	50, 206, 236
BceAI	ACGGC	2 cut(s)	17, 213
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	2 cut(s)	368, 486
BfmI	CTRYAG	1 cut(s)	519
BfrI	CTTAAG	1 cut(s)	253
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	4 cut(s)	193, 201, 516, 519
BlsI	GCNGC	4 cut(s)	194, 202, 517, 520
BmiI	GGNNCC	1 cut(s)	502
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	371, 386
Bpu14I	TTCGAA	1 cut(s)	171
Bsa29I	ATCGAT	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse21I	CCTNAGG	1 cut(s)	359
BseCI	ATCGAT	1 cut(s)	153
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	4 cut(s)	179, 187, 502, 505
BseYI	CCCAGC	1 cut(s)	75
BsgI	GTGCAG	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	500
BshVI	ATCGAT	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	2 cut(s)	368, 486
BsmBI	CGTCTC	1 cut(s)	368
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	3 cut(s)	88, 175, 205
BspACI	CCGC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	351
BspDI	ATCGAT	1 cut(s)	153
BspHI	TCATGA	2 cut(s)	52, 208
BspLI	GGNNCC	1 cut(s)	502
BspMAI	CTGCAG	1 cut(s)	523
BspPI	GGATC	1 cut(s)	96
BspT104I	TTCGAA	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	500
BspTI	CTTAAG	1 cut(s)	253
BssMI	GATC	3 cut(s)	88, 175, 205
Bst4CI	ACNGT	2 cut(s)	223, 304
BstAFI	CTTAAG	1 cut(s)	253
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	359
BstENI	CCTNNNNNAGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	3 cut(s)	91, 178, 208
BstMAI	GTCTC	2 cut(s)	368, 486
BstMBI	GATC	3 cut(s)	88, 175, 205
BstNSI	RCATGY	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	4 cut(s)	179, 187, 502, 505
BstV2I	GAAGAC	2 cut(s)	371, 386
BstX2I	RGATCY	2 cut(s)	88, 175
BstYI	RGATCY	2 cut(s)	88, 175
Bsu15I	ATCGAT	1 cut(s)	153
Bsu36I	CCTNAGG	1 cut(s)	359
BsuTUI	ATCGAT	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	235
CaiI	CAGNNNCTG	1 cut(s)	515
CciI	TCATGA	2 cut(s)	52, 208
ClaI	ATCGAT	1 cut(s)	153
CviAII	CATG	4 cut(s)	53, 72, 209, 412
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	3 cut(s)	90, 177, 207
DpnII	GATC	3 cut(s)	88, 175, 205
Eco24I	GRGCYC	1 cut(s)	82
Eco81I	CCTNAGG	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	368
FaeI	CATG	4 cut(s)	56, 75, 212, 415
FaiI	YATR	9 cut(s)	54, 73, 129, 181, 183, 210, 413, 435, 486
FatI	CATG	4 cut(s)	52, 71, 208, 411
FauI	CCCGC	1 cut(s)	389
FbaI	TGATCA	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	4 cut(s)	193, 201, 516, 519
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	4 cut(s)	193, 201, 516, 519
GluI	GCNGC	4 cut(s)	193, 201, 516, 519
GsaI	CCCAGC	1 cut(s)	79
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	4 cut(s)	56, 75, 212, 415
HindIII	AAGCTT	2 cut(s)	134, 262
HinfI	GANTC	3 cut(s)	38, 49, 479
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	3 cut(s)	58, 131, 257
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	2 cut(s)	53, 209
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	223, 304
HpyCH4V	TGCA	4 cut(s)	195, 233, 464, 521
HpyF3I	CTNAG	1 cut(s)	359
Hsp92II	CATG	4 cut(s)	56, 75, 212, 415
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	88, 175, 205
LpnPI	CCDG	5 cut(s)	61, 99, 219, 371, 429
Lsp1109I	GCAGC	4 cut(s)	179, 187, 502, 505
LweI	GCATC	1 cut(s)	112
MaeIII	GTNAC	2 cut(s)	46, 304
MalI	GATC	3 cut(s)	90, 177, 207
MboI	GATC	3 cut(s)	88, 175, 205
MboII	GAAGA	3 cut(s)	185, 376, 391
MflI	RGATCY	2 cut(s)	88, 175
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	5 cut(s)	65, 110, 164, 311, 488
MlyI	GAGTC	2 cut(s)	43, 488
MnlI	CCTC	6 cut(s)	106, 110, 151, 300, 354, 364
MseI	TTAA	2 cut(s)	254, 492
MspCI	CTTAAG	1 cut(s)	253
MspI	CCGG	1 cut(s)	86
NdeII	GATC	3 cut(s)	88, 175, 205
NlaIII	CATG	4 cut(s)	56, 75, 212, 415
NlaIV	GGNNCC	1 cut(s)	502
NmuCI	GTSAC	2 cut(s)	46, 304
NspI	RCATGY	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	171
PagI	TCATGA	2 cut(s)	52, 208
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	4 cut(s)	194, 202, 517, 520
PleI	GAGTC	2 cut(s)	43, 487
PpsI	GAGTC	2 cut(s)	43, 487
PspFI	CCCAGC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	502
PstI	CTGCAG	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	2 cut(s)	88, 175
SaqAI	TTAA	2 cut(s)	254, 492
SatI	GCNGC	4 cut(s)	193, 201, 516, 519
Sau3AI	GATC	3 cut(s)	88, 175, 205
SchI	GAGTC	2 cut(s)	43, 488
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	6 cut(s)	121, 138, 266, 322, 349, 517
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	519
SfuI	TTCGAA	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	5 cut(s)	65, 110, 164, 311, 488
SsiI	CCGC	1 cut(s)	396
TaaI	ACNGT	2 cut(s)	223, 304
TaqI	TCGA	5 cut(s)	11, 36, 153, 171, 322
TasI	AATT	5 cut(s)	65, 110, 164, 311, 488
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	254, 492
Tru9I	TTAA	2 cut(s)	254, 492
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	2 cut(s)	46, 304
TseI	GCWGC	4 cut(s)	192, 200, 515, 518
Tsp45I	GTSAC	2 cut(s)	46, 304
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	309
Vha464I	CTTAAG	1 cut(s)	253
XagI	CCTNNNNNAGG	1 cut(s)	100
XapI	RAATTY	3 cut(s)	65, 110, 488
XceI	RCATGY	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.