Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Forward (+)

15552971 .. 15553405

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1181000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGTCCTATGTTCGCCGGCAAAACCATCGCCCTACTCCGCTGGATCAAGTTGGAGGGCAACAGTGGCAGGAATGTGGCGATGATAAAATCGAGTAAGGATACGAGAGACGCCATTGATTCAGTTGTGACGCACGACGGGGTGAAGTTTTCGTGCTGGGCGCTGTCTGATCTGTCGTCGTTTCGGCAGAACTTTGGAGGAGATGCTTATGACGAGGTAATTTTGGAGCTGGGTAAGTGTTTAATCATTGTTGGGTTTATGTCAATTCTTCTCTTTTTATTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

96

Amino Acids

10.53

Weight (kDa)

6.54

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	1 - 63	1.6e-10	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	111
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	5
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	5
BccI	CCATC	1 cut(s)	35
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciVI	GTATCC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	111
Bse118I	RCCGGY	1 cut(s)	17
BseRI	GAGGAG	1 cut(s)	213
BseYI	CCCAGC	2 cut(s)	156, 229
BsiSI	CCGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	102
BsmBI	CGTCTC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	45, 169
BspACI	CCGC	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssMI	GATC	2 cut(s)	45, 169
BssNI	GRCGYC	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	19
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	48, 172
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	2 cut(s)	45, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	94
BtgZI	GCGATG	2 cut(s)	13, 95
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	5
CseI	GACGC	2 cut(s)	119, 139
CviJI	RGCY	1 cut(s)	229
CviKI_1	RGCY	1 cut(s)	229
DpnI	GATC	2 cut(s)	47, 171
DpnII	GATC	2 cut(s)	45, 169
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
Esp3I	CGTCTC	1 cut(s)	102
FaiI	YATR	3 cut(s)	11, 210, 260
GlaI	GCGC	1 cut(s)	162
GsaI	CCCAGC	2 cut(s)	160, 233
HaeII	RGCGCY	1 cut(s)	164
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	2 cut(s)	119, 139
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	169
Hpy99I	CGWCG	2 cut(s)	140, 181
HpyCH4III	ACNGT	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	111
HspAI	GCGC	1 cut(s)	161
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	45, 169
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	5 cut(s)	28, 31, 55, 142, 215
LweI	GCATC	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	47, 171
MboI	GATC	2 cut(s)	45, 169
MboII	GAAGA	1 cut(s)	260
MluCI	AATT	2 cut(s)	219, 264
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	3 cut(s)	49, 191, 208
MroNI	GCCGGC	1 cut(s)	17
MseI	TTAA	2 cut(s)	242, 286
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	66
NaeI	GCCGGC	1 cut(s)	19
NdeII	GATC	2 cut(s)	45, 169
NgoMIV	GCCGGC	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	127
PdiI	GCCGGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
PspFI	CCCAGC	2 cut(s)	156, 229
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
SaqAI	TTAA	2 cut(s)	242, 286
Sau3AI	GATC	2 cut(s)	45, 169
Sau96I	GGNCC	1 cut(s)	5
SetI	ASST	2 cut(s)	219, 231
SfaNI	GCATC	1 cut(s)	193
SinI	GGWCC	1 cut(s)	5
Sse9I	AATT	2 cut(s)	219, 264
SsiI	CCGC	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	1 cut(s)	92
TasI	AATT	2 cut(s)	219, 264
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	242, 286
Tru9I	TTAA	2 cut(s)	242, 286
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.