Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Forward (+)

36010405 .. 36011028

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1248000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCCTCCTTCAAGCCCTCCATTCCCCCCACCAGTGACTTTTCTACCTCCGGCGAGGTCCATGTCATCATGGGTCCCATGTTCGCCGGCACAACCACCGCCCTACTCCGCCGGAACAAGTTGGAGGGCAACAGCGGCAGGAATGTGGCGATGATAAAATCGAGTAAGGATACGAGATACGCCATTGATTCAGTTGTGACGCACGACGGGGTGAAGTTTCTGTGCTGGGCGCTGTCTGATCTGTCGTTGTTTCGGCAGAACTTTGGAGGAGATGCTTATGACAAGTATGTTTTACTATTGGAAGAGAAAAATGGCAGAGCAGGGGTGGAAGAGAAAAATGGCTGGGCTCTTTTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

120

Amino Acids

13.08

Weight (kDa)

7.88

Isoelectric Point (pI)

26.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	18 - 73	6.5e-12	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	99, 109, 135
AgsI	TTSAA	1 cut(s)	13
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	2 cut(s)	58, 74
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	2 cut(s)	58, 74
BanII	GRGCYC	1 cut(s)	349
BciVI	GTATCC	1 cut(s)	163
BfoI	RGCGCY	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme18I	GGWCC	2 cut(s)	58, 74
BmgT120I	GGNCC	2 cut(s)	58, 74
BmiI	GGNNCC	2 cut(s)	75, 76
BmsI	GCATC	1 cut(s)	262
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	282
BseYI	CCCAGC	2 cut(s)	225, 342
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	51, 87, 112
BslFI	GGGAC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	3 cut(s)	99, 109, 135
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	75, 76
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	86
BssMI	GATC	1 cut(s)	238
Bst6I	CTCTTC	2 cut(s)	297, 324
BstC8I	GCNNGC	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	88
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	58, 74
CseI	GACGC	1 cut(s)	208
CviAII	CATG	3 cut(s)	62, 70, 79
CviJI	RGCY	4 cut(s)	5, 16, 342, 347
CviKI_1	RGCY	4 cut(s)	5, 16, 342, 347
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eam1104I	CTCTTC	2 cut(s)	297, 324
EarI	CTCTTC	2 cut(s)	297, 324
EciI	GGCGGA	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	349
Eco47I	GGWCC	2 cut(s)	58, 74
EcoO109I	RGGNCCY	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	349
FaeI	CATG	3 cut(s)	65, 73, 82
FaiI	YATR	5 cut(s)	63, 71, 80, 279, 288
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	3 cut(s)	61, 69, 78
Fnu4HI	GCNGC	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	1 cut(s)	136
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	136
GsaI	CCCAGC	2 cut(s)	229, 346
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	51, 87, 112
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	3 cut(s)	65, 73, 82
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	3 cut(s)	51, 87, 112
HphI	GGTGA	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	238
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	65, 73, 82
HspAI	GCGC	1 cut(s)	230
KflI	GGGWCCC	1 cut(s)	74
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	8 cut(s)	46, 64, 100, 124, 125, 211, 306, 328
LweI	GCATC	1 cut(s)	262
MaeIII	GTNAC	2 cut(s)	35, 196
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	2 cut(s)	314, 341
MhlI	GDGCHC	1 cut(s)	349
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	6 cut(s)	16, 28, 49, 58, 118, 260
MroNI	GCCGGC	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	3 cut(s)	51, 87, 112
MwoI	GCNNNNNNNGC	1 cut(s)	135
NaeI	GCCGGC	1 cut(s)	88
NdeII	GATC	1 cut(s)	238
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	3 cut(s)	65, 73, 82
NlaIV	GGNNCC	2 cut(s)	75, 76
NmuCI	GTSAC	2 cut(s)	35, 196
PdiI	GCCGGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
PspFI	CCCAGC	2 cut(s)	225, 342
PspN4I	GGNNCC	2 cut(s)	75, 76
PspPI	GGNCC	2 cut(s)	58, 74
PspPPI	RGGWCCY	1 cut(s)	74
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	2 cut(s)	58, 74
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	2 cut(s)	50, 60
SfaNI	GCATC	1 cut(s)	262
SinI	GGWCC	2 cut(s)	58, 74
SsiI	CCGC	3 cut(s)	99, 109, 135
TaqI	TCGA	1 cut(s)	161
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	188
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	2 cut(s)	35, 196
Tsp45I	GTSAC	2 cut(s)	35, 196
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	58, 74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.