Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Reverse (-)

74423370 .. 74425244

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG535400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAACTCTTCCTCTTCCCATCTTCTCTCTCCTTCTCTTCCCTAATTTTCAATCCCTTTTCTCACTGTAACCCTAAATCCATGGCCTCCTTCAAACCCACAATCCCCCTGACCAGCGAATCCGCCCCTTCCCGCCGCCCCCCCTCCGGCGAGGTCCACGTCATCATGGGTCCCATGTTCGCCGGCAAGACCACCGCTCTCCTACGCCGGATCAAGTCCGAGGGCGCCAACGGCAGGAATGTGGCGATGATAAAATCGAGCAAGGATAACAGATACGCCGTCGATTCGGTGGTGACTCATGATGGGGCGAAATTTCCATGCTGGGCTCTGCCGGATCTGTCCTCCTTTAGGCACAAATTTGGAGGTGATGCTTATGATAAGCTTGATGTTATTGGTATTGATGAGGCTCAATTTTTCGAAGATCTATATGATTTCTGCTGCACGGTTGCTGATCATGATGGGAAAACTGTGATTGTTGCAGGCTTGGATGGCGATTACTTAAGGAAAAGCTTTGGCTCGGTGCTTGATGTAGTGCCTCTTGCTGATACAGTGACCAAATTGACAGCTCGATGTGAAATGTGTGGCAAACGAGCTTTCTTTACCCTGAGGAAGACGGAGGAGACGAAGACCGAACTGATTGGCGGGGCTGATGTCTACATGCCTGTTTGTCGCCAACACTATGTCAATGGACAAGTTCTCATCAAATCTGCAAGAAGTGTTGTGGAGTCTCATAAATTTAAGAGTGGCACCATTTCAGAAGCAGCTGCAGTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

258

Amino Acids

28.26

Weight (kDa)

8.62

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	50 - 227	4.8e-54	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	224, 746
AccBSI	CCGCTC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	654
AciI	CCGC	5 cut(s)	123, 133, 136, 195, 642
AclWI	GGATC	2 cut(s)	218, 342
AcsI	RAATTY	3 cut(s)	311, 356, 734
AcyI	GRCGYC	1 cut(s)	225
AfiI	CCNNNNNNNGG	3 cut(s)	146, 234, 348
AflII	CTTAAG	1 cut(s)	499
AgsI	TTSAA	2 cut(s)	52, 94
AjiI	CACGTC	1 cut(s)	160
AluBI	AGCT	5 cut(s)	382, 510, 566, 593, 764
AluI	AGCT	5 cut(s)	382, 510, 566, 593, 764
Alw26I	GTCTC	2 cut(s)	614, 732
AlwI	GGATC	2 cut(s)	218, 342
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	3 cut(s)	438, 761, 764
ApoI	RAATTY	3 cut(s)	311, 356, 734
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	154, 170
AsuHPI	GGTGA	2 cut(s)	304, 377
AsuII	TTCGAA	1 cut(s)	417
AvaII	GGWCC	2 cut(s)	154, 170
AxyI	CCTNAGG	1 cut(s)	605
BanI	GGYRCC	2 cut(s)	224, 746
BanII	GRGCYC	1 cut(s)	328
BbsI	GAAGAC	2 cut(s)	617, 632
BbvI	GCAGC	3 cut(s)	425, 751, 773
BccI	CCATC	4 cut(s)	28, 296, 452, 482
BceAI	ACGGC	2 cut(s)	247, 263
BclI	TGATCA	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	614, 732
BfmI	CTRYAG	1 cut(s)	765
BfoI	RGCGCY	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	499
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	4 cut(s)	136, 439, 762, 765
BlsI	GCNGC	4 cut(s)	137, 440, 763, 766
Bme18I	GGWCC	2 cut(s)	154, 170
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	154, 170
BmiI	GGNNCC	4 cut(s)	171, 172, 226, 748
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	2 cut(s)	617, 632
Bpu14I	TTCGAA	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	81, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 234, 348
Bse118I	RCCGGY	1 cut(s)	182
Bse21I	CCTNAGG	1 cut(s)	605
BseDI	CCNNGG	2 cut(s)	81, 219
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	3 cut(s)	146, 234, 348
BseMII	CTCAG	1 cut(s)	596
BseRI	GAGGAG	1 cut(s)	632
BseXI	GCAGC	3 cut(s)	425, 751, 773
BseYI	CCCAGC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	424
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	2 cut(s)	224, 746
BsiSI	CCGG	4 cut(s)	147, 183, 208, 332
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	3 cut(s)	146, 234, 348
BsmAI	GTCTC	2 cut(s)	614, 732
BsmBI	CGTCTC	1 cut(s)	614
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	4 cut(s)	210, 334, 421, 451
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	5 cut(s)	123, 133, 136, 195, 642
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	597
BspHI	TCATGA	2 cut(s)	298, 454
BspLI	GGNNCC	4 cut(s)	171, 172, 226, 748
BspMAI	CTGCAG	1 cut(s)	769
BspPI	GGATC	2 cut(s)	218, 342
BspT104I	TTCGAA	1 cut(s)	417
BspT107I	GGYRCC	2 cut(s)	224, 746
BspTI	CTTAAG	1 cut(s)	499
BsrBI	CCGCTC	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	81, 219
BssMI	GATC	4 cut(s)	210, 334, 421, 451
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	81
Bst4CI	ACNGT	4 cut(s)	68, 445, 469, 550
Bst6I	CTCTTC	3 cut(s)	14, 20, 43
BstACI	GRCGYC	1 cut(s)	225
BstAFI	CTTAAG	1 cut(s)	499
BstBI	TTCGAA	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	184, 481
BstDEI	CTNAG	1 cut(s)	605
BstDSI	CCRYGG	1 cut(s)	81
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	493
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	4 cut(s)	213, 337, 424, 454
BstMAI	GTCTC	2 cut(s)	614, 732
BstMBI	GATC	4 cut(s)	210, 334, 421, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 489
BstNSI	RCATGY	1 cut(s)	661
BstSFI	CTRYAG	1 cut(s)	765
BstV1I	GCAGC	3 cut(s)	425, 751, 773
BstV2I	GAAGAC	2 cut(s)	617, 632
BstX2I	RGATCY	2 cut(s)	334, 421
BstYI	RGATCY	2 cut(s)	334, 421
Bsu36I	CCTNAGG	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	260
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	2 cut(s)	64, 555
Cac8I	GCNNGC	2 cut(s)	184, 481
CciI	TCATGA	2 cut(s)	298, 454
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	154, 170
CviAII	CATG	7 cut(s)	82, 166, 175, 299, 318, 455, 658
DdeI	CTNAG	1 cut(s)	605
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	4 cut(s)	212, 336, 423, 453
DpnII	GATC	4 cut(s)	210, 334, 421, 451
Eam1104I	CTCTTC	3 cut(s)	14, 20, 43
EarI	CTCTTC	3 cut(s)	14, 20, 43
EciI	GGCGGA	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	154, 170
Eco81I	CCTNAGG	1 cut(s)	605
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	328
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	614
FaeI	CATG	7 cut(s)	85, 169, 178, 302, 321, 458, 661
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	7 cut(s)	81, 165, 174, 298, 317, 454, 657
FauI	CCCGC	2 cut(s)	140, 635
FbaI	TGATCA	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	136, 439, 762, 765
FokI	GGATG	1 cut(s)	500
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	4 cut(s)	136, 439, 762, 765
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	4 cut(s)	136, 439, 762, 765
GsaI	CCCAGC	1 cut(s)	325
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	4 cut(s)	147, 183, 208, 332
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	7 cut(s)	85, 169, 178, 302, 321, 458, 661
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HindIII	AAGCTT	2 cut(s)	380, 508
HinfI	GANTC	4 cut(s)	119, 284, 295, 725
HpaII	CCGG	4 cut(s)	147, 183, 208, 332
HphI	GGTGA	2 cut(s)	304, 377
Hpy166II	GTNNAC	2 cut(s)	157, 655
Hpy188I	TCNGA	2 cut(s)	220, 757
Hpy188III	TCNNGA	2 cut(s)	299, 455
Hpy8I	GTNNAC	2 cut(s)	157, 655
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	3 cut(s)	43, 100, 138
HpyCH4III	ACNGT	4 cut(s)	68, 445, 469, 550
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	4 cut(s)	441, 479, 710, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 489
HpyF3I	CTNAG	1 cut(s)	605
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	7 cut(s)	85, 169, 178, 302, 321, 458, 661
HspAI	GCGC	1 cut(s)	225
KasI	GGCGCC	1 cut(s)	224
KflI	GGGWCCC	1 cut(s)	170
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	4 cut(s)	210, 334, 421, 451
Lsp1109I	GCAGC	3 cut(s)	425, 751, 773
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	68, 292, 550
MalI	GATC	4 cut(s)	212, 336, 423, 453
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	4 cut(s)	210, 334, 421, 451
MboII	GAAGA	6 cut(s)	7, 15, 30, 431, 622, 637
MflI	RGATCY	2 cut(s)	334, 421
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	6 cut(s)	45, 311, 356, 410, 557, 734
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	2 cut(s)	289, 734
MroNI	GCCGGC	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	500, 738
MspA1I	CMGCKG	1 cut(s)	764
MspCI	CTTAAG	1 cut(s)	499
MspI	CCGG	4 cut(s)	147, 183, 208, 332
MwoI	GCNNNNNNNGC	2 cut(s)	231, 489
NaeI	GCCGGC	1 cut(s)	184
NarI	GGCGCC	1 cut(s)	225
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	4 cut(s)	210, 334, 421, 451
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	7 cut(s)	85, 169, 178, 302, 321, 458, 661
NlaIV	GGNNCC	4 cut(s)	171, 172, 226, 748
NmuCI	GTSAC	2 cut(s)	292, 550
NspI	RCATGY	1 cut(s)	661
NspV	TTCGAA	1 cut(s)	417
PagI	TCATGA	2 cut(s)	298, 454
PcsI	WCGNNNNNNNCGW	1 cut(s)	620
PdiI	GCCGGC	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	119, 284
PkrI	GCNGC	4 cut(s)	137, 440, 763, 766
PleI	GAGTC	2 cut(s)	289, 733
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	2 cut(s)	289, 733
PpuMI	RGGWCCY	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	321
PspN4I	GGNNCC	4 cut(s)	171, 172, 226, 748
PspPI	GGNCC	2 cut(s)	154, 170
PspPPI	RGGWCCY	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	769
PsuI	RGATCY	2 cut(s)	334, 421
PvuII	CAGCTG	1 cut(s)	764
SaqAI	TTAA	2 cut(s)	500, 738
SatI	GCNGC	4 cut(s)	136, 439, 762, 765
Sau3AI	GATC	4 cut(s)	210, 334, 421, 451
Sau96I	GGNCC	2 cut(s)	154, 170
SchI	GAGTC	2 cut(s)	289, 734
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	8 cut(s)	156, 162, 367, 384, 512, 568, 595, 766
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	765
SfoI	GGCGCC	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	417
SinI	GGWCC	2 cut(s)	154, 170
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	6 cut(s)	45, 311, 356, 410, 557, 734
SsiI	CCGC	5 cut(s)	123, 133, 136, 195, 642
SspDI	GGCGCC	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	4 cut(s)	68, 445, 469, 550
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	4 cut(s)	257, 282, 417, 568
TaqII	GACCGA	1 cut(s)	644
TasI	AATT	6 cut(s)	45, 311, 356, 410, 557, 734
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	119, 284
Tru1I	TTAA	2 cut(s)	500, 738
Tru9I	TTAA	2 cut(s)	500, 738
TscAI	CASTG	2 cut(s)	71, 555
TseFI	GTSAC	2 cut(s)	292, 550
TseI	GCWGC	3 cut(s)	438, 761, 764
Tsp45I	GTSAC	2 cut(s)	292, 550
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	2 cut(s)	71, 555
Vha464I	CTTAAG	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	154, 170
XagI	CCTNNNNNAGG	1 cut(s)	346
XapI	RAATTY	3 cut(s)	311, 356, 734
XceI	RCATGY	1 cut(s)	661
XmiI	GTMKAC	1 cut(s)	654
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.