Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8442271.1

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Reverse (-)

1038 .. 1603

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8442271.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

cttgatgttattggtatcgatgaggctcaatttttcgaagatctatatgatttctgctgcacggctgctgatcatgatgggaaaactgtgattgttgcaggcttggatggcgattacttaaggaaaagctttggctcggtgcttgatgtagtgcctcttgctgatacagtgaccaaattgacagctcgatgtgaaatgtgtggcaaacgagctttctttaccctgaggaagacggaggagacgaagactgaactgattggcggggctgatgtctacatgcctgtttgtcgccaacactatgtcaatggacaagttctcatcaaatctgcaagaagtgttgtggagtctcataaatttaagagtggcaccatttcagaagcagctgcagttatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

131

Amino Acids

14.33

Weight (kDa)

5.32

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	273
AciI	CCGC	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	353
AflII	CTTAAG	1 cut(s)	118
AluBI	AGCT	4 cut(s)	129, 185, 212, 383
AluI	AGCT	4 cut(s)	129, 185, 212, 383
Alw26I	GTCTC	2 cut(s)	233, 351
ApeKI	GCWGC	4 cut(s)	57, 65, 380, 383
ApoI	RAATTY	1 cut(s)	353
AsuII	TTCGAA	1 cut(s)	36
AxyI	CCTNAGG	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	365
BbsI	GAAGAC	2 cut(s)	236, 251
BbvI	GCAGC	4 cut(s)	44, 52, 370, 392
BccI	CCATC	2 cut(s)	71, 101
BceAI	ACGGC	1 cut(s)	78
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	233, 351
BfmI	CTRYAG	1 cut(s)	384
BfrI	CTTAAG	1 cut(s)	118
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	4 cut(s)	58, 66, 381, 384
BlsI	GCNGC	4 cut(s)	59, 67, 382, 385
BmiI	GGNNCC	1 cut(s)	367
BpiI	GAAGAC	2 cut(s)	236, 251
Bpu14I	TTCGAA	1 cut(s)	36
Bsa29I	ATCGAT	1 cut(s)	18
Bse21I	CCTNAGG	1 cut(s)	224
BseCI	ATCGAT	1 cut(s)	18
BseGI	GGATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	4 cut(s)	44, 52, 370, 392
BsgI	GTGCAG	1 cut(s)	43
BshNI	GGYRCC	1 cut(s)	365
BshVI	ATCGAT	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	233, 351
BsmBI	CGTCTC	1 cut(s)	233
Bsp119I	TTCGAA	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	40, 70
BspACI	CCGC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	216
BspDI	ATCGAT	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	388
BspT104I	TTCGAA	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	365
BspTI	CTTAAG	1 cut(s)	118
BssMI	GATC	2 cut(s)	40, 70
Bst4CI	ACNGT	2 cut(s)	88, 169
BstAFI	CTTAAG	1 cut(s)	118
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	43, 73
BstMAI	GTCTC	2 cut(s)	233, 351
BstMBI	GATC	2 cut(s)	40, 70
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	4 cut(s)	44, 52, 370, 392
BstV2I	GAAGAC	2 cut(s)	236, 251
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
Bsu15I	ATCGAT	1 cut(s)	18
Bsu36I	CCTNAGG	1 cut(s)	224
BsuTUI	ATCGAT	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	100
CciI	TCATGA	1 cut(s)	73
ClaI	ATCGAT	1 cut(s)	18
CviAII	CATG	2 cut(s)	74, 277
CviJI	RGCY	9 cut(s)	26, 65, 102, 129, 135, 185, 212, 266, 383
CviKI_1	RGCY	9 cut(s)	26, 65, 102, 129, 135, 185, 212, 266, 383
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	2 cut(s)	42, 72
DpnII	GATC	2 cut(s)	40, 70
Eco81I	CCTNAGG	1 cut(s)	224
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	2 cut(s)	77, 280
FaiI	YATR	6 cut(s)	46, 48, 75, 278, 300, 351
FatI	CATG	2 cut(s)	73, 276
FauI	CCCGC	1 cut(s)	254
FbaI	TGATCA	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	58, 66, 381, 384
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	4 cut(s)	58, 66, 381, 384
GluI	GCNGC	4 cut(s)	58, 66, 381, 384
Hin1II	CATG	2 cut(s)	77, 280
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	1 cut(s)	74
Hpy8I	GTNNAC	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	88, 169
HpyCH4V	TGCA	4 cut(s)	60, 98, 329, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	77, 280
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	40, 70
LpnPI	CCDG	3 cut(s)	84, 236, 294
Lsp1109I	GCAGC	4 cut(s)	44, 52, 370, 392
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	42, 72
MboI	GATC	2 cut(s)	40, 70
MboII	GAAGA	3 cut(s)	50, 241, 256
MflI	RGATCY	1 cut(s)	40
MluCI	AATT	3 cut(s)	29, 176, 353
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	4 cut(s)	16, 165, 219, 229
MseI	TTAA	2 cut(s)	119, 357
MspA1I	CMGCKG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	2 cut(s)	40, 70
NlaIII	CATG	2 cut(s)	77, 280
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	36
PagI	TCATGA	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	239
PkrI	GCNGC	4 cut(s)	59, 67, 382, 385
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	367
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	119, 357
SatI	GCNGC	4 cut(s)	58, 66, 381, 384
Sau3AI	GATC	2 cut(s)	40, 70
SchI	GAGTC	1 cut(s)	353
SetI	ASST	4 cut(s)	131, 187, 214, 385
SfcI	CTRYAG	1 cut(s)	384
SfuI	TTCGAA	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	3 cut(s)	29, 176, 353
SsiI	CCGC	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	88, 169
TaqI	TCGA	3 cut(s)	18, 36, 187
TasI	AATT	3 cut(s)	29, 176, 353
Tru1I	TTAA	2 cut(s)	119, 357
Tru9I	TTAA	2 cut(s)	119, 357
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	4 cut(s)	57, 65, 380, 383
Tsp45I	GTSAC	1 cut(s)	169
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	174
Vha464I	CTTAAG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.