Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Reverse (-)

70402482 .. 70403729

Gene Structure 1248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020944

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCCTCCTTCAAACCCTCAATCCCCCTGACCAGCGAATCCGCCCCTTCCCGCCGCCCCCCCTCCGGCGAGGTCCACGTCATCATGGGTCCCATGTTCGCCGGCAAGACCACCGCTCTCCTCCGCCGGATCAAGTCCGAGGTCGCCAACGGCAGGAATGTGGCGATGATAAAATCGAGCAAGGATAACAGATACGCCGTCGATTCGGTGGTGACTCATGATGGGGCTAAATTTCCATGCTGGGCTCTGCCAGATCTGTCCTCGTTTAGGCACAAATTCGGAGGTGATGCTTATGATAAGCTTGATGTTATTGGTATCGATGAGGCTCAATTTTTCGAAGATCTATATGATTTCTGCTGCACGGCTGCTGATCATGATGGGAAAACTGTGATTGTTGCAGGCTTGGATGGTGATTACTTGAGGAAAAGCTTTGGCTCAGTGCTTGATGTAGTACCTCTTGCTGATACAGTGACCAAATTGACAGCTCGATGTGAAATGTGTGGCAAACGAGCTTTCTTTACCCTGAGGAAGACGGAGGAGACGAAGACTGAACTGATTGGCGGGGCTGATGTCTACATGCCTGTTTGTCGCCAACACTATGTCAATGGACAAGTTCTCATCAAATCTGCAAGAAGTGTTGTGGAGTCTCCTAAATTTAAGAGTGGCACCATTTCAGAAGCAGCTCCAGTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

232

Amino Acids

25.19

Weight (kDa)

8.17

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	23 - 200	7.4e-54	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	665
AccBSI	CCGCTC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	573
AciI	CCGC	6 cut(s)	42, 52, 55, 114, 124, 561
AclWI	GGATC	1 cut(s)	137
AcsI	RAATTY	3 cut(s)	230, 275, 653
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	3 cut(s)	65, 153, 267
AgsI	TTSAA	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	79
AluBI	AGCT	5 cut(s)	301, 429, 485, 512, 683
AluI	AGCT	5 cut(s)	301, 429, 485, 512, 683
Alw26I	GTCTC	2 cut(s)	533, 651
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	357, 365, 680
ApoI	RAATTY	3 cut(s)	230, 275, 653
AspS9I	GGNCC	2 cut(s)	73, 89
AsuHPI	GGTGA	3 cut(s)	223, 296, 422
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	73, 89
AxyI	CCTNAGG	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	665
BanII	GRGCYC	1 cut(s)	247
BbsI	GAAGAC	2 cut(s)	536, 551
BbvI	GCAGC	3 cut(s)	344, 352, 692
BccI	CCATC	3 cut(s)	215, 371, 401
BceAI	ACGGC	3 cut(s)	166, 182, 378
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	533, 651
BglII	AGATCT	2 cut(s)	253, 340
BisI	GCNGC	4 cut(s)	55, 358, 366, 681
BlsI	GCNGC	4 cut(s)	56, 359, 367, 682
Bme18I	GGWCC	2 cut(s)	73, 89
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	73, 89
BmiI	GGNNCC	3 cut(s)	90, 91, 667
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	2 cut(s)	536, 551
BpmI	CTGGAG	1 cut(s)	669
Bpu14I	TTCGAA	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	439
Bsa29I	ATCGAT	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 153, 267
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	686
Bse21I	CCTNAGG	1 cut(s)	524
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	3 cut(s)	65, 153, 267
BseMII	CTCAG	2 cut(s)	450, 515
BseNI	ACTGG	1 cut(s)	686
BseRI	GAGGAG	2 cut(s)	110, 551
BseXI	GCAGC	3 cut(s)	344, 352, 692
BseYI	CCCAGC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	343
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	665
BshVI	ATCGAT	1 cut(s)	318
BsiSI	CCGG	3 cut(s)	66, 102, 127
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	3 cut(s)	65, 153, 267
BsmAI	GTCTC	2 cut(s)	533, 651
BsmBI	CGTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	4 cut(s)	129, 253, 340, 370
BspACI	CCGC	6 cut(s)	42, 52, 55, 114, 124, 561
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	449, 516
BspDI	ATCGAT	1 cut(s)	318
BspHI	TCATGA	2 cut(s)	217, 373
BspLI	GGNNCC	3 cut(s)	90, 91, 667
BspPI	GGATC	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	665
BsrBI	CCGCTC	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	686
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	4 cut(s)	129, 253, 340, 370
Bst4CI	ACNGT	2 cut(s)	388, 469
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	103, 400
BstDEI	CTNAG	2 cut(s)	436, 524
BstENI	CCTNNNNNAGG	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	4 cut(s)	132, 256, 343, 373
BstMAI	GTCTC	2 cut(s)	533, 651
BstMBI	GATC	4 cut(s)	129, 253, 340, 370
BstNSI	RCATGY	1 cut(s)	580
BstV1I	GCAGC	3 cut(s)	344, 352, 692
BstV2I	GAAGAC	2 cut(s)	536, 551
BstX2I	RGATCY	2 cut(s)	253, 340
BstYI	RGATCY	2 cut(s)	253, 340
Bsu15I	ATCGAT	1 cut(s)	318
Bsu36I	CCTNAGG	1 cut(s)	524
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	179
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	2 cut(s)	444, 474
Cac8I	GCNNGC	2 cut(s)	103, 400
CciI	TCATGA	2 cut(s)	217, 373
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	73, 89
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	6 cut(s)	85, 94, 218, 237, 374, 577
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	2 cut(s)	436, 524
DpnI	GATC	4 cut(s)	131, 255, 342, 372
DpnII	GATC	4 cut(s)	129, 253, 340, 370
EciI	GGCGGA	2 cut(s)	31, 113
Eco24I	GRGCYC	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	73, 89
Eco81I	CCTNAGG	1 cut(s)	524
EcoNI	CCTNNNNNAGG	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	247
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	6 cut(s)	88, 97, 221, 240, 377, 580
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	6 cut(s)	84, 93, 217, 236, 373, 576
FauI	CCCGC	2 cut(s)	59, 554
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	4 cut(s)	55, 358, 366, 681
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	4 cut(s)	55, 358, 366, 681
GluI	GCNGC	4 cut(s)	55, 358, 366, 681
GsaI	CCCAGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	66, 102, 127
Hin1II	CATG	6 cut(s)	88, 97, 221, 240, 377, 580
HindIII	AAGCTT	2 cut(s)	299, 427
HinfI	GANTC	4 cut(s)	38, 203, 214, 644
HpaII	CCGG	3 cut(s)	66, 102, 127
HphI	GGTGA	3 cut(s)	223, 296, 422
Hpy166II	GTNNAC	2 cut(s)	76, 574
Hpy188I	TCNGA	3 cut(s)	139, 281, 676
Hpy188III	TCNNGA	2 cut(s)	218, 374
Hpy8I	GTNNAC	2 cut(s)	76, 574
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	19, 57
HpyCH4III	ACNGT	2 cut(s)	388, 469
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	3 cut(s)	360, 398, 629
HpyF3I	CTNAG	2 cut(s)	436, 524
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	6 cut(s)	88, 97, 221, 240, 377, 580
KflI	GGGWCCC	1 cut(s)	89
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	4 cut(s)	129, 253, 340, 370
LmnI	GCTCC	1 cut(s)	688
Lsp1109I	GCAGC	3 cut(s)	344, 352, 692
LweI	GCATC	1 cut(s)	277
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	211, 469
MalI	GATC	4 cut(s)	131, 255, 342, 372
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	4 cut(s)	129, 253, 340, 370
MboII	GAAGA	3 cut(s)	350, 541, 556
MflI	RGATCY	2 cut(s)	253, 340
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	5 cut(s)	230, 275, 329, 476, 653
MlyI	GAGTC	2 cut(s)	208, 653
MroNI	GCCGGC	1 cut(s)	101
MseI	TTAA	1 cut(s)	657
MspI	CCGG	3 cut(s)	66, 102, 127
NaeI	GCCGGC	1 cut(s)	103
NdeII	GATC	4 cut(s)	129, 253, 340, 370
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	6 cut(s)	88, 97, 221, 240, 377, 580
NlaIV	GGNNCC	3 cut(s)	90, 91, 667
NmuCI	GTSAC	2 cut(s)	211, 469
NspI	RCATGY	1 cut(s)	580
NspV	TTCGAA	1 cut(s)	336
PagI	TCATGA	2 cut(s)	217, 373
PcsI	WCGNNNNNNNCGW	1 cut(s)	539
PdiI	GCCGGC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	38, 203
PkrI	GCNGC	4 cut(s)	56, 359, 367, 682
PleI	GAGTC	2 cut(s)	208, 652
PpsI	GAGTC	2 cut(s)	208, 652
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	240
PspN4I	GGNNCC	3 cut(s)	90, 91, 667
PspPI	GGNCC	2 cut(s)	73, 89
PspPPI	RGGWCCY	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	253, 340
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	4 cut(s)	55, 358, 366, 681
Sau3AI	GATC	4 cut(s)	129, 253, 340, 370
Sau96I	GGNCC	2 cut(s)	73, 89
SchI	GAGTC	2 cut(s)	208, 653
SduI	GDGCHC	1 cut(s)	247
SfaNI	GCATC	1 cut(s)	277
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	2 cut(s)	73, 89
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	5 cut(s)	230, 275, 329, 476, 653
SsiI	CCGC	6 cut(s)	42, 52, 55, 114, 124, 561
TaaI	ACNGT	2 cut(s)	388, 469
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	5 cut(s)	176, 201, 318, 336, 487
TasI	AATT	5 cut(s)	230, 275, 329, 476, 653
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	38, 203
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	2 cut(s)	444, 474
TseFI	GTSAC	2 cut(s)	211, 469
TseI	GCWGC	3 cut(s)	357, 365, 680
Tsp45I	GTSAC	2 cut(s)	211, 469
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	2 cut(s)	444, 474
VpaK11BI	GGWCC	2 cut(s)	73, 89
XagI	CCTNNNNNAGG	1 cut(s)	265
XapI	RAATTY	3 cut(s)	230, 275, 653
XceI	RCATGY	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.