Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Reverse (-)

21042951 .. 21044806

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G202500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGAGCACTTTCATTCCCACCTCTCTTCTTCCCTCCCAAAAATTTAAATCCCTTCTCTTTGTGTAACCCTAAATCCATGGCTTCTTTCAAGCCCTCAATTCCCTTGACCAGCGATTCTGCTGCCTCTGTCCCGTCCCCCCACACCTCCGGTGAGGTACATGTTATCATGGGCCCCATGTTCGCCGGCAAAACCACCGCCCTCCTTCGTCGGATCAAGTCCGAGGGCAACAACGGCAGAAATGTGGCAATGATAAAATCCAGTAAGGATACGAGATATGCTATCGATTCGGTTGTGACGCATGATGGGGCAAAGTTTCCGTGCTGGGCGCTGCCCGATCTGTTGTCGTTTAGGCAAAATTTTGGAGGAGAGGCTTATGAGAAGCTTGATGTCATCGGTATTGATGAGGCTCAGTTTTTCGAGGATCTATATGATTTCTGCTGCATGGCTGCTGATCATGATGGAAAAACTATTATTGTTGCAGGCCTGGATGGTGATTACTTGAGGAGGAGTTTTGGCTCAGTGCTTGAAATAATACCTCTGGCTGATACTGTGACCAAGTTGACGGCTCGATGTGAACTCTGTGGCAAACGAGCTTTCTTTACCCTGAGGAAGACAGAAGAGACACGAACCGAACTGATTGCTGGGGCTGATGTCTACATGCCTGTCTGTCGCCAACACTATGTCAATGGACAAGTTCTCATGAAAGCTGCAAGAACTGTTGTGGAGTCTCATAAATTTAAGAGTGACACCTTTCCTGAAGTAGCTGCAGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

260

Amino Acids

28.52

Weight (kDa)

7.6

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	657
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	2 cut(s)	221, 432
AcsI	RAATTY	3 cut(s)	43, 358, 737
AcuI	CTGAAG	1 cut(s)	780
AfaI	GTAC	1 cut(s)	159
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	91, 530
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	4 cut(s)	385, 596, 710, 767
AluI	AGCT	4 cut(s)	385, 596, 710, 767
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	617, 735
AlwI	GGATC	2 cut(s)	221, 432
AoxI	GGCC	2 cut(s)	172, 484
ApaI	GGGCCC	1 cut(s)	176
ApeKI	GCWGC	6 cut(s)	122, 331, 441, 449, 710, 767
ApoI	RAATTY	3 cut(s)	43, 358, 737
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	2 cut(s)	172, 173
AsuHPI	GGTGA	2 cut(s)	164, 506
AxyI	CCTNAGG	1 cut(s)	608
BaeGI	GKGCMC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	6 cut(s)	109, 318, 428, 436, 697, 754
BccI	CCATC	3 cut(s)	299, 455, 485
BceAI	ACGGC	2 cut(s)	250, 582
BcgI	CGANNNNNNTGC	4 cut(s)	104, 138, 623, 657
BciT130I	CCWGG	1 cut(s)	488
BciVI	GTATCC	1 cut(s)	262
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	2 cut(s)	617, 735
BfmI	CTRYAG	1 cut(s)	768
BfoI	RGCGCY	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	6 cut(s)	123, 332, 442, 450, 711, 768
BlsI	GCNGC	6 cut(s)	124, 333, 443, 451, 712, 769
Bme1390I	CCNGG	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	172, 173
BmiI	GGNNCC	2 cut(s)	174, 175
BmrFI	CCNGG	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	620
BpuEI	CTTGAG	1 cut(s)	523
Bsa29I	ATCGAT	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	78, 222
BsaWI	WCCGGW	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	261
Bse21I	CCTNAGG	1 cut(s)	608
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	488
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	78, 222
BseGI	GGATG	1 cut(s)	496
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	3 cut(s)	425, 534, 599
BseNI	ACTGG	1 cut(s)	261
BseRI	GAGGAG	3 cut(s)	381, 520, 523
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	6 cut(s)	109, 318, 428, 436, 697, 754
BseYI	CCCAGC	2 cut(s)	324, 644
BshFI	GGCC	2 cut(s)	174, 486
BshVI	ATCGAT	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	150, 186
BslFI	GGGAC	2 cut(s)	116, 121
BsmAI	GTCTC	2 cut(s)	617, 735
BsmFI	GGGAC	2 cut(s)	116, 121
BsnI	GGCC	2 cut(s)	174, 486
Bsp120I	GGGCCC	1 cut(s)	172
Bsp1286I	GDGCHC	2 cut(s)	10, 176
Bsp143I	GATC	4 cut(s)	213, 337, 424, 454
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	2 cut(s)	174, 486
BspCNI	CTCAG	3 cut(s)	424, 533, 600
BspDI	ATCGAT	1 cut(s)	285
BspHI	TCATGA	2 cut(s)	457, 702
BspLI	GGNNCC	2 cut(s)	174, 175
BspMAI	CTGCAG	1 cut(s)	772
BspPI	GGATC	2 cut(s)	221, 432
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	78, 222
BssMI	GATC	4 cut(s)	213, 337, 424, 454
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	2 cut(s)	553, 721
Bst6I	CTCTTC	2 cut(s)	32, 615
BstC8I	GCNNGC	2 cut(s)	187, 484
BstDEI	CTNAG	3 cut(s)	411, 520, 608
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	496
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	4 cut(s)	216, 340, 427, 457
BstMAI	GTCTC	2 cut(s)	617, 735
BstMBI	GATC	4 cut(s)	213, 337, 424, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstNI	CCWGG	1 cut(s)	488
BstNSI	RCATGY	2 cut(s)	164, 664
BstSCI	CCNGG	1 cut(s)	486
BstSFI	CTRYAG	1 cut(s)	768
BstSLI	GKGCMC	1 cut(s)	176
BstV1I	GCAGC	6 cut(s)	109, 318, 428, 436, 697, 754
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
Bsu15I	ATCGAT	1 cut(s)	285
Bsu36I	CCTNAGG	1 cut(s)	608
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	174, 486
BsuTUI	ATCGAT	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	2 cut(s)	187, 484
CciI	TCATGA	2 cut(s)	457, 702
CfoI	GCGC	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	2 cut(s)	172, 173
ClaI	ATCGAT	1 cut(s)	285
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	9 cut(s)	79, 161, 169, 178, 302, 445, 458, 661, 703
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	3 cut(s)	411, 520, 608
DpnI	GATC	4 cut(s)	215, 339, 426, 456
DpnII	GATC	4 cut(s)	213, 337, 424, 454
DraI	TTTAAA	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	32, 615
EarI	CTCTTC	2 cut(s)	32, 615
Eco130I	CCWWGG	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	780
Eco81I	CCTNAGG	1 cut(s)	608
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	9 cut(s)	82, 164, 172, 181, 305, 448, 461, 664, 706
FaqI	GGGAC	2 cut(s)	116, 121
FatI	CATG	9 cut(s)	78, 160, 168, 177, 301, 444, 457, 660, 702
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	657
Fnu4HI	GCNGC	6 cut(s)	123, 332, 442, 450, 711, 768
FokI	GGATG	1 cut(s)	503
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	6 cut(s)	123, 332, 442, 450, 711, 768
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	6 cut(s)	123, 332, 442, 450, 711, 768
GsaI	CCCAGC	2 cut(s)	328, 648
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	2 cut(s)	174, 486
HapII	CCGG	2 cut(s)	150, 186
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	9 cut(s)	82, 164, 172, 181, 305, 448, 461, 664, 706
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	3 cut(s)	116, 287, 728
HpaII	CCGG	2 cut(s)	150, 186
HphI	GGTGA	2 cut(s)	164, 506
Hpy166II	GTNNAC	3 cut(s)	564, 578, 658
Hpy188I	TCNGA	2 cut(s)	213, 223
Hpy188III	TCNNGA	3 cut(s)	458, 703, 758
Hpy8I	GTNNAC	3 cut(s)	564, 578, 658
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	2 cut(s)	64, 215
HpyCH4III	ACNGT	2 cut(s)	553, 721
HpyCH4V	TGCA	4 cut(s)	444, 482, 713, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	3 cut(s)	411, 520, 608
Hsp92II	CATG	9 cut(s)	82, 164, 172, 181, 305, 448, 461, 664, 706
HspAI	GCGC	1 cut(s)	329
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	4 cut(s)	213, 337, 424, 454
Lsp1109I	GCAGC	6 cut(s)	109, 318, 428, 436, 697, 754
MaeIII	GTNAC	4 cut(s)	65, 295, 553, 746
MalI	GATC	4 cut(s)	215, 339, 426, 456
MboI	GATC	4 cut(s)	213, 337, 424, 454
MboII	GAAGA	4 cut(s)	19, 22, 625, 632
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	10, 176
MluCI	AATT	4 cut(s)	43, 99, 358, 737
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	1 cut(s)	191
MroNI	GCCGGC	1 cut(s)	185
MseI	TTAA	2 cut(s)	47, 741
MspI	CCGG	2 cut(s)	150, 186
MspR9I	CCNGG	1 cut(s)	488
MvaI	CCWGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	1 cut(s)	234
NaeI	GCCGGC	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	4 cut(s)	213, 337, 424, 454
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	9 cut(s)	82, 164, 172, 181, 305, 448, 461, 664, 706
NlaIV	GGNNCC	2 cut(s)	174, 175
NmuCI	GTSAC	3 cut(s)	295, 553, 746
NspI	RCATGY	2 cut(s)	164, 664
PagI	TCATGA	2 cut(s)	457, 702
PceI	AGGCCT	1 cut(s)	486
PciI	ACATGT	1 cut(s)	160
PdiI	GCCGGC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	116, 287
PkrI	GCNGC	6 cut(s)	124, 333, 443, 451, 712, 769
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
PscI	ACATGT	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	486
PspFI	CCCAGC	2 cut(s)	324, 644
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	2 cut(s)	174, 175
PspOMI	GGGCCC	1 cut(s)	172
PspPI	GGNCC	2 cut(s)	172, 173
PstI	CTGCAG	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	47, 741
SatI	GCNGC	6 cut(s)	123, 332, 442, 450, 711, 768
Sau3AI	GATC	4 cut(s)	213, 337, 424, 454
Sau96I	GGNCC	2 cut(s)	172, 173
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	1 cut(s)	488
SduI	GDGCHC	2 cut(s)	10, 176
SetI	ASST	9 cut(s)	25, 149, 159, 387, 541, 598, 712, 755, 769
SfcI	CTRYAG	1 cut(s)	768
SmiI	ATTTAAAT	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	4 cut(s)	43, 99, 358, 737
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	1 cut(s)	198
StuI	AGGCCT	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	486
StyI	CCWWGG	1 cut(s)	78
SwaI	ATTTAAAT	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	553, 721
TaqI	TCGA	3 cut(s)	285, 420, 571
TasI	AATT	4 cut(s)	43, 99, 358, 737
TfiI	GAWTC	2 cut(s)	116, 287
Tru1I	TTAA	2 cut(s)	47, 741
Tru9I	TTAA	2 cut(s)	47, 741
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	3 cut(s)	295, 553, 746
TseI	GCWGC	6 cut(s)	122, 331, 441, 449, 710, 767
Tsp45I	GTSAC	3 cut(s)	295, 553, 746
TspDTI	ATGAA	1 cut(s)	719
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	528
XapI	RAATTY	3 cut(s)	43, 358, 737
XceI	RCATGY	2 cut(s)	164, 664
XmiI	GTMKAC	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.